Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10980

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10975 and ABID97_RS10980 are separated by 16 nucleotidesABID97_RS10980 and ABID97_RS10985 are separated by 53 nucleotidesABID97_RS10985 and ABID97_RS10990 overlap by 49 nucleotides ABID97_RS10975: ABID97_RS10975 - acetyl-CoA C-acyltransferase family protein, at 2,273,411 to 2,274,595 _RS10975 ABID97_RS10980: ABID97_RS10980 - alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB, at 2,274,612 to 2,275,019 _RS10980 ABID97_RS10985: ABID97_RS10985 - DUF3299 domain-containing protein, at 2,275,073 to 2,275,642 _RS10985 ABID97_RS10990: ABID97_RS10990 - SulP family inorganic anion transporter, at 2,275,594 to 2,277,345 _RS10990 Position (kb) 2274 2275 2276Strain fitness (log2 ratio) -1 0 1 2at 2273.787 kb on - strand, within ABID97_RS10975at 2274.249 kb on - strand, within ABID97_RS10975at 2274.276 kb on - strand, within ABID97_RS10975at 2274.276 kb on - strand, within ABID97_RS10975at 2274.276 kb on - strand, within ABID97_RS10975at 2274.276 kb on - strand, within ABID97_RS10975at 2274.276 kb on - strand, within ABID97_RS10975at 2274.276 kb on - strand, within ABID97_RS10975at 2274.276 kb on - strand, within ABID97_RS10975at 2274.939 kb on + strand, within ABID97_RS10980at 2274.939 kb on + strand, within ABID97_RS10980at 2274.939 kb on + strand, within ABID97_RS10980at 2274.940 kb on - strand, within ABID97_RS10980at 2275.035 kb on + strandat 2275.035 kb on + strandat 2275.433 kb on + strand, within ABID97_RS10985at 2275.433 kb on + strand, within ABID97_RS10985

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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2,273,787 - ABID97_RS10975 0.32 -0.3
2,274,249 - ABID97_RS10975 0.71 +0.4
2,274,276 - ABID97_RS10975 0.73 -0.0
2,274,276 - ABID97_RS10975 0.73 +0.3
2,274,276 - ABID97_RS10975 0.73 +0.8
2,274,276 - ABID97_RS10975 0.73 +1.6
2,274,276 - ABID97_RS10975 0.73 -0.3
2,274,276 - ABID97_RS10975 0.73 -0.5
2,274,276 - ABID97_RS10975 0.73 +0.9
2,274,939 + ABID97_RS10980 0.80 -0.2
2,274,939 + ABID97_RS10980 0.80 -0.4
2,274,939 + ABID97_RS10980 0.80 +0.2
2,274,940 - ABID97_RS10980 0.80 +0.2
2,275,035 + -0.6
2,275,035 + +2.5
2,275,433 + ABID97_RS10985 0.63 -0.2
2,275,433 + ABID97_RS10985 0.63 +0.1

Or see this region's nucleotide sequence