Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10975 and ABID97_RS10980 are separated by 16 nucleotides ABID97_RS10980 and ABID97_RS10985 are separated by 53 nucleotides ABID97_RS10985 and ABID97_RS10990 overlap by 49 nucleotides
ABID97_RS10975: ABID97_RS10975 - acetyl-CoA C-acyltransferase family protein, at 2,273,411 to 2,274,595
_RS10975
ABID97_RS10980: ABID97_RS10980 - alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB, at 2,274,612 to 2,275,019
_RS10980
ABID97_RS10985: ABID97_RS10985 - DUF3299 domain-containing protein, at 2,275,073 to 2,275,642
_RS10985
ABID97_RS10990: ABID97_RS10990 - SulP family inorganic anion transporter, at 2,275,594 to 2,277,345
_RS10990
Position (kb)
2274
2275
2276 Strain fitness (log2 ratio)
-1
0
1
2 at 2273.787 kb on - strand, within ABID97_RS10975 at 2274.249 kb on - strand, within ABID97_RS10975 at 2274.276 kb on - strand, within ABID97_RS10975 at 2274.276 kb on - strand, within ABID97_RS10975 at 2274.276 kb on - strand, within ABID97_RS10975 at 2274.276 kb on - strand, within ABID97_RS10975 at 2274.276 kb on - strand, within ABID97_RS10975 at 2274.276 kb on - strand, within ABID97_RS10975 at 2274.276 kb on - strand, within ABID97_RS10975 at 2274.939 kb on + strand, within ABID97_RS10980 at 2274.939 kb on + strand, within ABID97_RS10980 at 2274.939 kb on + strand, within ABID97_RS10980 at 2274.940 kb on - strand, within ABID97_RS10980 at 2275.035 kb on + strand at 2275.035 kb on + strand at 2275.433 kb on + strand, within ABID97_RS10985 at 2275.433 kb on + strand, within ABID97_RS10985
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 2,273,787 - ABID97_RS10975 0.32 -0.3 2,274,249 - ABID97_RS10975 0.71 +0.4 2,274,276 - ABID97_RS10975 0.73 -0.0 2,274,276 - ABID97_RS10975 0.73 +0.3 2,274,276 - ABID97_RS10975 0.73 +0.8 2,274,276 - ABID97_RS10975 0.73 +1.6 2,274,276 - ABID97_RS10975 0.73 -0.3 2,274,276 - ABID97_RS10975 0.73 -0.5 2,274,276 - ABID97_RS10975 0.73 +0.9 2,274,939 + ABID97_RS10980 0.80 -0.2 2,274,939 + ABID97_RS10980 0.80 -0.4 2,274,939 + ABID97_RS10980 0.80 +0.2 2,274,940 - ABID97_RS10980 0.80 +0.2 2,275,035 + -0.6 2,275,035 + +2.5 2,275,433 + ABID97_RS10985 0.63 -0.2 2,275,433 + ABID97_RS10985 0.63 +0.1
Or see this region's nucleotide sequence