Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08830

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08825 and ABID97_RS08830 are separated by 4 nucleotidesABID97_RS08830 and ABID97_RS08835 are separated by 13 nucleotides ABID97_RS08825: ABID97_RS08825 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 1,847,089 to 1,849,281 _RS08825 ABID97_RS08830: ABID97_RS08830 - indolepyruvate oxidoreductase subunit beta family protein, at 1,849,286 to 1,850,794 _RS08830 ABID97_RS08835: ABID97_RS08835 - PDR/VanB family oxidoreductase, at 1,850,808 to 1,851,800 _RS08835 Position (kb) 1849 1850 1851Strain fitness (log2 ratio) -1 0 1at 1849.159 kb on + strandat 1849.270 kb on + strandat 1849.391 kb on + strandat 1849.391 kb on + strandat 1850.103 kb on - strand, within ABID97_RS08830at 1850.655 kb on - strandat 1850.985 kb on + strand, within ABID97_RS08835at 1851.265 kb on - strand, within ABID97_RS08835at 1851.265 kb on - strand, within ABID97_RS08835

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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1,849,159 + +0.1
1,849,270 + -0.5
1,849,391 + -1.2
1,849,391 + +1.0
1,850,103 - ABID97_RS08830 0.54 -0.8
1,850,655 - +1.4
1,850,985 + ABID97_RS08835 0.18 +1.2
1,851,265 - ABID97_RS08835 0.46 +0.2
1,851,265 - ABID97_RS08835 0.46 +0.1

Or see this region's nucleotide sequence