Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05100

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05085 and ABID97_RS05090 are separated by 79 nucleotidesABID97_RS05090 and ABID97_RS05095 are separated by 24 nucleotidesABID97_RS05095 and ABID97_RS05100 are separated by 43 nucleotidesABID97_RS05100 and ABID97_RS05105 are separated by 10 nucleotidesABID97_RS05105 and ABID97_RS05110 are separated by 29 nucleotides ABID97_RS05085: ABID97_RS05085 - hypothetical protein, at 1,075,772 to 1,075,954 _RS05085 ABID97_RS05090: ABID97_RS05090 - DUF3540 domain-containing protein, at 1,076,034 to 1,076,417 _RS05090 ABID97_RS05095: ABID97_RS05095 - DUF4150 domain-containing protein, at 1,076,442 to 1,076,837 _RS05095 ABID97_RS05100: ABID97_RS05100 - type VI secretion system tip protein TssI/VgrG, at 1,076,881 to 1,079,283 _RS05100 ABID97_RS05105: ABID97_RS05105 - DUF6484 domain-containing protein, at 1,079,294 to 1,079,764 _RS05105 ABID97_RS05110: ABID97_RS05110 - DUF4150 domain-containing protein, at 1,079,794 to 1,080,555 _RS05110 Position (kb) 1076 1077 1078 1079 1080Strain fitness (log2 ratio) -1 0 1at 1076.537 kb on + strand, within ABID97_RS05095at 1076.537 kb on + strand, within ABID97_RS05095at 1076.983 kb on + strandat 1076.983 kb on + strandat 1077.358 kb on + strand, within ABID97_RS05100at 1077.359 kb on - strand, within ABID97_RS05100at 1077.398 kb on - strand, within ABID97_RS05100at 1077.398 kb on - strand, within ABID97_RS05100at 1077.851 kb on - strand, within ABID97_RS05100at 1079.921 kb on - strand, within ABID97_RS05110

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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1,076,537 + ABID97_RS05095 0.24 +0.9
1,076,537 + ABID97_RS05095 0.24 +1.6
1,076,983 + +0.2
1,076,983 + +0.9
1,077,358 + ABID97_RS05100 0.20 +0.4
1,077,359 - ABID97_RS05100 0.20 +0.4
1,077,398 - ABID97_RS05100 0.22 +0.4
1,077,398 - ABID97_RS05100 0.22 +0.2
1,077,851 - ABID97_RS05100 0.40 +0.4
1,079,921 - ABID97_RS05110 0.17 -0.4

Or see this region's nucleotide sequence