Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01150 and ABID97_RS01155 are separated by 7 nucleotides ABID97_RS01155 and ABID97_RS01160 are separated by 142 nucleotides
ABID97_RS01150: ABID97_RS01150 - helix-turn-helix domain-containing protein, at 234,663 to 235,928
_RS01150
ABID97_RS01155: ABID97_RS01155 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 235,936 to 238,380
_RS01155
ABID97_RS01160: ABID97_RS01160 - ROK family transcriptional regulator, at 238,523 to 239,683
_RS01160
Position (kb) 235
236
237
238
239 Strain fitness (log2 ratio) -1
0
1
2 at 235.164 kb on + strand, within ABID97_RS01150 at 235.164 kb on + strand, within ABID97_RS01150 at 235.299 kb on + strand, within ABID97_RS01150 at 235.300 kb on - strand, within ABID97_RS01150 at 235.300 kb on - strand, within ABID97_RS01150 at 236.021 kb on + strand at 236.021 kb on + strand at 236.022 kb on - strand at 236.117 kb on + strand at 236.118 kb on - strand at 236.301 kb on - strand, within ABID97_RS01155 at 236.301 kb on - strand, within ABID97_RS01155 at 236.432 kb on + strand, within ABID97_RS01155 at 236.909 kb on + strand, within ABID97_RS01155 at 236.909 kb on + strand, within ABID97_RS01155 at 237.059 kb on + strand, within ABID97_RS01155 at 237.059 kb on + strand, within ABID97_RS01155 at 237.059 kb on + strand, within ABID97_RS01155 at 237.059 kb on + strand, within ABID97_RS01155 at 237.060 kb on - strand, within ABID97_RS01155 at 237.122 kb on + strand, within ABID97_RS01155 at 237.122 kb on + strand, within ABID97_RS01155 at 237.123 kb on - strand, within ABID97_RS01155 at 237.123 kb on - strand, within ABID97_RS01155 at 237.308 kb on + strand, within ABID97_RS01155 at 237.308 kb on + strand, within ABID97_RS01155 at 237.309 kb on - strand, within ABID97_RS01155 at 237.309 kb on - strand, within ABID97_RS01155 at 237.309 kb on - strand, within ABID97_RS01155 at 237.311 kb on + strand, within ABID97_RS01155 at 237.312 kb on - strand, within ABID97_RS01155 at 237.527 kb on + strand, within ABID97_RS01155 at 237.527 kb on + strand, within ABID97_RS01155 at 237.527 kb on + strand, within ABID97_RS01155 at 237.588 kb on - strand, within ABID97_RS01155 at 237.801 kb on - strand, within ABID97_RS01155 at 237.828 kb on - strand, within ABID97_RS01155 at 238.169 kb on + strand at 238.244 kb on + strand at 238.245 kb on - strand at 238.245 kb on - strand at 238.245 kb on - strand at 238.245 kb on - strand at 238.245 kb on - strand at 238.248 kb on - strand at 238.248 kb on - strand at 238.438 kb on - strand at 238.438 kb on - strand at 238.599 kb on + strand at 238.599 kb on + strand at 239.071 kb on - strand, within ABID97_RS01160
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 235,164 + ABID97_RS01150 0.40 +0.4 235,164 + ABID97_RS01150 0.40 -0.3 235,299 + ABID97_RS01150 0.50 +0.0 235,300 - ABID97_RS01150 0.50 +0.7 235,300 - ABID97_RS01150 0.50 +0.2 236,021 + -0.7 236,021 + -0.1 236,022 - +0.3 236,117 + -0.9 236,118 - -0.6 236,301 - ABID97_RS01155 0.15 -0.4 236,301 - ABID97_RS01155 0.15 +0.4 236,432 + ABID97_RS01155 0.20 +0.3 236,909 + ABID97_RS01155 0.40 +0.0 236,909 + ABID97_RS01155 0.40 +0.4 237,059 + ABID97_RS01155 0.46 +0.3 237,059 + ABID97_RS01155 0.46 +0.4 237,059 + ABID97_RS01155 0.46 +0.6 237,059 + ABID97_RS01155 0.46 -0.3 237,060 - ABID97_RS01155 0.46 -0.6 237,122 + ABID97_RS01155 0.49 +0.9 237,122 + ABID97_RS01155 0.49 -0.7 237,123 - ABID97_RS01155 0.49 -0.2 237,123 - ABID97_RS01155 0.49 +0.2 237,308 + ABID97_RS01155 0.56 -0.3 237,308 + ABID97_RS01155 0.56 -0.6 237,309 - ABID97_RS01155 0.56 -0.2 237,309 - ABID97_RS01155 0.56 -0.4 237,309 - ABID97_RS01155 0.56 +0.9 237,311 + ABID97_RS01155 0.56 +1.0 237,312 - ABID97_RS01155 0.56 +0.3 237,527 + ABID97_RS01155 0.65 -0.4 237,527 + ABID97_RS01155 0.65 -0.1 237,527 + ABID97_RS01155 0.65 +0.7 237,588 - ABID97_RS01155 0.68 +0.4 237,801 - ABID97_RS01155 0.76 +0.5 237,828 - ABID97_RS01155 0.77 -0.6 238,169 + +0.4 238,244 + +0.6 238,245 - -0.3 238,245 - +0.2 238,245 - +0.4 238,245 - +2.4 238,245 - +0.9 238,248 - -0.0 238,248 - -0.5 238,438 - +0.2 238,438 - +0.9 238,599 + +0.3 238,599 + +0.7 239,071 - ABID97_RS01160 0.47 +0.6
Or see this region's nucleotide sequence