Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1480

Experiment: Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1478 and PfGW456L13_1479 overlap by 8 nucleotidesPfGW456L13_1479 and PfGW456L13_1480 are separated by 168 nucleotidesPfGW456L13_1480 and PfGW456L13_1481 overlap by 32 nucleotidesPfGW456L13_1481 and PfGW456L13_1482 are separated by 130 nucleotides PfGW456L13_1478 - Lipoprotein signal peptidase (EC 3.4.23.36), at 1,632,442 to 1,632,909 _1478 PfGW456L13_1479 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 1,632,902 to 1,633,354 _1479 PfGW456L13_1480 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 1,633,523 to 1,634,470 _1480 PfGW456L13_1481 - Type IV fimbrial biogenesis protein FimT, at 1,634,439 to 1,634,978 _1481 PfGW456L13_1482 - type 4 fimbrial biogenesis protein FimU, at 1,635,109 to 1,635,582 _1482 Position (kb) 1633 1634 1635Strain fitness (log2 ratio) -2 -1 0 1 2at 1632.867 kb on + strandat 1632.915 kb on + strandat 1632.915 kb on + strandat 1632.915 kb on + strandat 1633.231 kb on + strand, within PfGW456L13_1479at 1633.326 kb on + strandat 1633.326 kb on + strandat 1633.326 kb on + strandat 1633.326 kb on + strandat 1633.352 kb on + strandat 1633.352 kb on + strandat 1633.352 kb on + strandat 1633.417 kb on + strandat 1633.431 kb on + strandat 1633.431 kb on + strandat 1633.437 kb on + strandat 1633.437 kb on + strandat 1634.587 kb on + strand, within PfGW456L13_1481at 1634.587 kb on + strand, within PfGW456L13_1481at 1634.587 kb on + strand, within PfGW456L13_1481at 1634.587 kb on + strand, within PfGW456L13_1481at 1634.587 kb on + strand, within PfGW456L13_1481at 1634.587 kb on + strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.589 kb on + strand, within PfGW456L13_1481at 1634.590 kb on - strand, within PfGW456L13_1481at 1634.590 kb on - strand, within PfGW456L13_1481at 1634.590 kb on - strand, within PfGW456L13_1481at 1634.631 kb on + strand, within PfGW456L13_1481at 1634.631 kb on + strand, within PfGW456L13_1481at 1634.631 kb on + strand, within PfGW456L13_1481at 1634.835 kb on - strand, within PfGW456L13_1481at 1634.835 kb on - strand, within PfGW456L13_1481at 1634.927 kb on + strandat 1634.928 kb on - strandat 1634.967 kb on + strandat 1634.968 kb on - strandat 1634.968 kb on - strandat 1634.968 kb on - strandat 1634.968 kb on - strandat 1634.968 kb on - strandat 1634.968 kb on - strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.084 kb on + strandat 1635.084 kb on + strandat 1635.084 kb on + strandat 1635.085 kb on - strandat 1635.120 kb on + strandat 1635.120 kb on + strandat 1635.120 kb on + strandat 1635.121 kb on - strandat 1635.121 kb on - strandat 1635.121 kb on - strandat 1635.121 kb on - strandat 1635.121 kb on - strandat 1635.355 kb on + strand, within PfGW456L13_1482at 1635.363 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.384 kb on - strand, within PfGW456L13_1482at 1635.384 kb on - strand, within PfGW456L13_1482

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0125 mg/ml
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1,632,867 + -0.4
1,632,915 + +1.1
1,632,915 + +1.9
1,632,915 + +0.4
1,633,231 + PfGW456L13_1479 0.73 +1.0
1,633,326 + -1.0
1,633,326 + +0.7
1,633,326 + -0.4
1,633,326 + -2.7
1,633,352 + +0.4
1,633,352 + +0.7
1,633,352 + +0.5
1,633,417 + +1.0
1,633,431 + -0.3
1,633,431 + +0.4
1,633,437 + -0.1
1,633,437 + +0.7
1,634,587 + PfGW456L13_1481 0.27 +0.1
1,634,587 + PfGW456L13_1481 0.27 +0.4
1,634,587 + PfGW456L13_1481 0.27 +0.6
1,634,587 + PfGW456L13_1481 0.27 +0.8
1,634,587 + PfGW456L13_1481 0.27 -0.1
1,634,587 + PfGW456L13_1481 0.27 +0.2
1,634,588 - PfGW456L13_1481 0.28 -0.3
1,634,588 - PfGW456L13_1481 0.28 -0.8
1,634,588 - PfGW456L13_1481 0.28 -0.1
1,634,588 - PfGW456L13_1481 0.28 -0.0
1,634,588 - PfGW456L13_1481 0.28 -0.2
1,634,588 - PfGW456L13_1481 0.28 -0.3
1,634,588 - PfGW456L13_1481 0.28 -0.8
1,634,589 + PfGW456L13_1481 0.28 -0.1
1,634,590 - PfGW456L13_1481 0.28 -0.3
1,634,590 - PfGW456L13_1481 0.28 -1.3
1,634,590 - PfGW456L13_1481 0.28 -0.9
1,634,631 + PfGW456L13_1481 0.36 -0.3
1,634,631 + PfGW456L13_1481 0.36 -1.4
1,634,631 + PfGW456L13_1481 0.36 -2.6
1,634,835 - PfGW456L13_1481 0.73 -0.2
1,634,835 - PfGW456L13_1481 0.73 -0.1
1,634,927 + -0.8
1,634,928 - +0.2
1,634,967 + -1.1
1,634,968 - +0.1
1,634,968 - +0.6
1,634,968 - +2.0
1,634,968 - +0.7
1,634,968 - +0.0
1,634,968 - +0.9
1,635,082 + -0.7
1,635,082 + -0.2
1,635,082 + +0.0
1,635,082 + +0.4
1,635,082 + +0.6
1,635,082 + -0.4
1,635,082 + +0.3
1,635,082 + +0.8
1,635,082 + +0.4
1,635,082 + -0.1
1,635,083 - +0.1
1,635,083 - -0.0
1,635,083 - -0.2
1,635,083 - +0.2
1,635,083 - +0.0
1,635,083 - -0.4
1,635,083 - +0.9
1,635,084 + +0.2
1,635,084 + -0.7
1,635,084 + -0.4
1,635,085 - +0.2
1,635,120 + +0.5
1,635,120 + -0.7
1,635,120 + -0.2
1,635,121 - -0.5
1,635,121 - +0.2
1,635,121 - +0.1
1,635,121 - -0.6
1,635,121 - +0.0
1,635,355 + PfGW456L13_1482 0.52 -0.2
1,635,363 + PfGW456L13_1482 0.54 +0.7
1,635,383 + PfGW456L13_1482 0.58 +0.4
1,635,383 + PfGW456L13_1482 0.58 +0.7
1,635,383 + PfGW456L13_1482 0.58 -0.0
1,635,383 + PfGW456L13_1482 0.58 -0.1
1,635,383 + PfGW456L13_1482 0.58 +0.9
1,635,383 + PfGW456L13_1482 0.58 +0.6
1,635,384 - PfGW456L13_1482 0.58 +0.3
1,635,384 - PfGW456L13_1482 0.58 +0.2

Or see this region's nucleotide sequence