Strain Fitness in Pseudomonas sp. S08-1 around OH686_23710

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23695 and OH686_23700 are separated by 192 nucleotidesOH686_23700 and OH686_23705 are separated by 98 nucleotidesOH686_23705 and OH686_23710 are separated by 25 nucleotidesOH686_23710 and OH686_23715 overlap by 4 nucleotidesOH686_23715 and OH686_23720 are separated by 64 nucleotidesOH686_23720 and OH686_23725 are separated by 30 nucleotides OH686_23695: OH686_23695 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 4,802,824 to 4,803,804 _23695 OH686_23700: OH686_23700 - hypothetical protein, at 4,803,997 to 4,804,224 _23700 OH686_23705: OH686_23705 - hypothetical protein, at 4,804,323 to 4,804,763 _23705 OH686_23710: OH686_23710 - hypothetical protein, at 4,804,789 to 4,805,100 _23710 OH686_23715: OH686_23715 - Protein YciE, at 4,805,097 to 4,805,606 _23715 OH686_23720: OH686_23720 - CDS, at 4,805,671 to 4,805,811 _23720 OH686_23725: OH686_23725 - Manganese catalase , at 4,805,842 to 4,806,720 _23725 Position (kb) 4804 4805 4806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4803.906 kb on + strandat 4803.906 kb on + strandat 4803.907 kb on - strandat 4803.907 kb on - strandat 4804.205 kb on + strandat 4804.205 kb on + strandat 4804.205 kb on + strandat 4804.205 kb on + strandat 4804.205 kb on + strandat 4804.205 kb on + strandat 4804.206 kb on - strandat 4804.206 kb on - strandat 4804.206 kb on - strandat 4804.206 kb on - strandat 4804.206 kb on - strandat 4804.242 kb on + strandat 4804.242 kb on + strandat 4804.242 kb on + strandat 4804.242 kb on + strandat 4804.242 kb on + strandat 4804.242 kb on + strandat 4804.243 kb on - strandat 4804.244 kb on + strandat 4804.244 kb on + strandat 4804.245 kb on - strandat 4804.245 kb on - strandat 4804.245 kb on - strandat 4804.327 kb on + strandat 4804.327 kb on + strandat 4804.327 kb on + strandat 4804.328 kb on - strandat 4804.328 kb on - strandat 4804.356 kb on + strandat 4804.356 kb on + strandat 4804.356 kb on + strandat 4804.356 kb on + strandat 4804.357 kb on - strandat 4804.459 kb on + strand, within OH686_23705at 4804.459 kb on + strand, within OH686_23705at 4804.516 kb on + strand, within OH686_23705at 4804.526 kb on - strand, within OH686_23705at 4804.526 kb on - strand, within OH686_23705at 4804.746 kb on + strandat 4804.913 kb on + strand, within OH686_23710at 4804.913 kb on + strand, within OH686_23710at 4804.913 kb on + strand, within OH686_23710at 4804.926 kb on + strand, within OH686_23710at 4804.926 kb on + strand, within OH686_23710at 4804.988 kb on + strand, within OH686_23710at 4804.989 kb on - strand, within OH686_23710at 4804.989 kb on - strand, within OH686_23710at 4805.272 kb on + strand, within OH686_23715at 4805.272 kb on + strand, within OH686_23715at 4805.273 kb on - strand, within OH686_23715at 4805.302 kb on + strand, within OH686_23715at 4805.303 kb on - strand, within OH686_23715at 4805.303 kb on - strand, within OH686_23715at 4805.303 kb on - strand, within OH686_23715at 4805.325 kb on + strand, within OH686_23715at 4805.325 kb on + strand, within OH686_23715at 4805.325 kb on + strand, within OH686_23715at 4805.325 kb on + strand, within OH686_23715at 4805.326 kb on - strand, within OH686_23715at 4805.326 kb on - strand, within OH686_23715at 4805.500 kb on + strand, within OH686_23715at 4805.500 kb on + strand, within OH686_23715at 4805.500 kb on + strand, within OH686_23715at 4805.500 kb on + strand, within OH686_23715at 4805.607 kb on - strandat 4805.607 kb on - strandat 4805.636 kb on + strandat 4805.636 kb on + strandat 4805.636 kb on + strandat 4805.636 kb on + strandat 4805.636 kb on + strandat 4805.636 kb on + strandat 4805.636 kb on + strandat 4805.637 kb on - strandat 4805.637 kb on - strandat 4805.637 kb on - strandat 4805.637 kb on - strandat 4805.637 kb on - strandat 4805.637 kb on - strandat 4805.637 kb on - strandat 4805.672 kb on + strandat 4805.672 kb on + strandat 4805.673 kb on - strandat 4805.677 kb on + strandat 4805.678 kb on - strandat 4805.678 kb on - strandat 4805.849 kb on + strandat 4805.849 kb on + strandat 4805.849 kb on + strandat 4805.849 kb on + strandat 4805.849 kb on + strandat 4805.850 kb on - strandat 4805.850 kb on - strandat 4805.850 kb on - strandat 4805.850 kb on - strandat 4805.850 kb on - strandat 4805.850 kb on - strandat 4805.850 kb on - strandat 4805.850 kb on - strandat 4805.853 kb on + strandat 4805.853 kb on + strandat 4805.853 kb on + strandat 4805.853 kb on + strandat 4805.853 kb on + strandat 4805.853 kb on + strandat 4805.853 kb on + strandat 4805.854 kb on - strandat 4805.854 kb on - strandat 4805.854 kb on - strandat 4805.854 kb on - strandat 4805.854 kb on - strandat 4805.854 kb on - strandat 4805.854 kb on - strandat 4805.854 kb on - strandat 4805.854 kb on - strandat 4805.854 kb on - strandat 4805.854 kb on - strandat 4805.869 kb on + strandat 4805.869 kb on + strandat 4805.870 kb on - strandat 4805.965 kb on + strand, within OH686_23725at 4805.965 kb on + strand, within OH686_23725at 4805.965 kb on + strand, within OH686_23725at 4805.965 kb on + strand, within OH686_23725at 4805.965 kb on + strand, within OH686_23725at 4805.965 kb on + strand, within OH686_23725at 4805.965 kb on + strand, within OH686_23725at 4805.965 kb on + strand, within OH686_23725at 4805.966 kb on - strand, within OH686_23725

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,803,906 + -0.1
4,803,906 + -1.1
4,803,907 - +0.3
4,803,907 - -1.0
4,804,205 + +0.5
4,804,205 + +1.2
4,804,205 + -0.2
4,804,205 + +0.3
4,804,205 + -0.5
4,804,205 + -0.0
4,804,206 - -0.6
4,804,206 - -0.4
4,804,206 - +0.7
4,804,206 - -1.7
4,804,206 - -0.6
4,804,242 + +0.4
4,804,242 + +0.6
4,804,242 + -0.1
4,804,242 + +0.5
4,804,242 + -0.3
4,804,242 + -0.2
4,804,243 - -0.9
4,804,244 + -0.7
4,804,244 + -0.3
4,804,245 - +1.5
4,804,245 - +0.2
4,804,245 - -0.7
4,804,327 + +0.7
4,804,327 + +0.7
4,804,327 + +0.4
4,804,328 - +0.8
4,804,328 - -0.6
4,804,356 + +0.0
4,804,356 + -0.8
4,804,356 + +1.4
4,804,356 + +0.7
4,804,357 - -0.9
4,804,459 + OH686_23705 0.31 -0.1
4,804,459 + OH686_23705 0.31 +0.6
4,804,516 + OH686_23705 0.44 -0.5
4,804,526 - OH686_23705 0.46 -0.0
4,804,526 - OH686_23705 0.46 +0.2
4,804,746 + +0.9
4,804,913 + OH686_23710 0.40 +2.2
4,804,913 + OH686_23710 0.40 +0.7
4,804,913 + OH686_23710 0.40 +1.2
4,804,926 + OH686_23710 0.44 +0.3
4,804,926 + OH686_23710 0.44 +0.4
4,804,988 + OH686_23710 0.64 -0.3
4,804,989 - OH686_23710 0.64 +0.8
4,804,989 - OH686_23710 0.64 +0.6
4,805,272 + OH686_23715 0.34 +0.0
4,805,272 + OH686_23715 0.34 -0.1
4,805,273 - OH686_23715 0.35 -2.9
4,805,302 + OH686_23715 0.40 -0.3
4,805,303 - OH686_23715 0.40 -0.6
4,805,303 - OH686_23715 0.40 +0.3
4,805,303 - OH686_23715 0.40 +0.5
4,805,325 + OH686_23715 0.45 -0.4
4,805,325 + OH686_23715 0.45 +0.4
4,805,325 + OH686_23715 0.45 +0.6
4,805,325 + OH686_23715 0.45 -0.2
4,805,326 - OH686_23715 0.45 -0.8
4,805,326 - OH686_23715 0.45 -0.4
4,805,500 + OH686_23715 0.79 +0.0
4,805,500 + OH686_23715 0.79 +0.4
4,805,500 + OH686_23715 0.79 -0.2
4,805,500 + OH686_23715 0.79 -1.3
4,805,607 - +0.1
4,805,607 - +0.6
4,805,636 + +0.0
4,805,636 + -0.4
4,805,636 + -2.5
4,805,636 + +0.3
4,805,636 + +0.2
4,805,636 + -1.0
4,805,636 + +0.7
4,805,637 - +0.8
4,805,637 - -0.1
4,805,637 - -0.3
4,805,637 - -0.9
4,805,637 - -1.7
4,805,637 - +0.2
4,805,637 - -0.8
4,805,672 + +0.7
4,805,672 + -0.4
4,805,673 - -0.7
4,805,677 + +0.4
4,805,678 - -1.0
4,805,678 - +0.1
4,805,849 + +0.7
4,805,849 + +0.5
4,805,849 + -0.9
4,805,849 + +0.2
4,805,849 + +0.6
4,805,850 - +0.2
4,805,850 - -2.7
4,805,850 - -1.9
4,805,850 - +1.0
4,805,850 - +0.1
4,805,850 - -2.4
4,805,850 - -0.6
4,805,850 - +0.8
4,805,853 + +0.4
4,805,853 + +0.4
4,805,853 + -0.1
4,805,853 + +0.5
4,805,853 + -0.5
4,805,853 + +0.0
4,805,853 + -0.3
4,805,854 - -0.3
4,805,854 - -0.3
4,805,854 - -0.0
4,805,854 - -0.7
4,805,854 - -0.3
4,805,854 - -0.5
4,805,854 - -1.1
4,805,854 - +0.4
4,805,854 - +0.9
4,805,854 - +0.5
4,805,854 - -0.8
4,805,869 + +0.1
4,805,869 + -0.6
4,805,870 - +0.1
4,805,965 + OH686_23725 0.14 +0.0
4,805,965 + OH686_23725 0.14 -1.4
4,805,965 + OH686_23725 0.14 -0.6
4,805,965 + OH686_23725 0.14 +0.2
4,805,965 + OH686_23725 0.14 -0.0
4,805,965 + OH686_23725 0.14 -1.0
4,805,965 + OH686_23725 0.14 +0.9
4,805,965 + OH686_23725 0.14 +0.0
4,805,966 - OH686_23725 0.14 -1.6

Or see this region's nucleotide sequence