Strain Fitness in Pseudomonas sp. S08-1 around OH686_22545

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22535 and OH686_22540 are separated by 159 nucleotidesOH686_22540 and OH686_22545 are separated by 12 nucleotidesOH686_22545 and OH686_22550 are separated by 52 nucleotidesOH686_22550 and OH686_22555 are separated by 101 nucleotides OH686_22535: OH686_22535 - Spermidine synthase-like protein, at 4,576,991 to 4,577,746 _22535 OH686_22540: OH686_22540 - CDS, at 4,577,906 to 4,578,064 _22540 OH686_22545: OH686_22545 - DEAD-box ATP-dependent RNA helicase DeaD ( CshA) , at 4,578,077 to 4,579,774 _22545 OH686_22550: OH686_22550 - hypothetical protein, at 4,579,827 to 4,580,228 _22550 OH686_22555: OH686_22555 - hypothetical protein, at 4,580,330 to 4,581,097 _22555 Position (kb) 4578 4579 4580Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.117 kb on + strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.118 kb on - strand, within OH686_22535at 4577.145 kb on - strand, within OH686_22535at 4577.145 kb on - strand, within OH686_22535at 4577.145 kb on - strand, within OH686_22535at 4577.145 kb on - strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.150 kb on + strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.151 kb on - strand, within OH686_22535at 4577.318 kb on + strand, within OH686_22535at 4577.318 kb on + strand, within OH686_22535at 4577.318 kb on + strand, within OH686_22535at 4577.319 kb on - strand, within OH686_22535at 4577.319 kb on - strand, within OH686_22535at 4577.319 kb on - strand, within OH686_22535at 4577.319 kb on - strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.420 kb on + strand, within OH686_22535at 4577.421 kb on - strand, within OH686_22535at 4577.421 kb on - strand, within OH686_22535at 4577.421 kb on - strand, within OH686_22535at 4577.422 kb on + strand, within OH686_22535at 4577.423 kb on - strand, within OH686_22535at 4577.423 kb on - strand, within OH686_22535at 4577.583 kb on - strand, within OH686_22535at 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.730 kb on + strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.731 kb on - strandat 4577.754 kb on + strandat 4577.754 kb on + strandat 4577.754 kb on + strandat 4577.755 kb on - strandat 4577.755 kb on - strandat 4577.755 kb on - strandat 4577.755 kb on - strandat 4577.835 kb on - strandat 4577.835 kb on - strandat 4577.870 kb on + strandat 4577.870 kb on + strandat 4577.870 kb on + strandat 4577.871 kb on - strandat 4577.871 kb on - strandat 4577.945 kb on + strand, within OH686_22540at 4577.945 kb on + strand, within OH686_22540at 4577.946 kb on - strand, within OH686_22540at 4577.981 kb on - strand, within OH686_22540at 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.064 kb on + strandat 4578.065 kb on + strandat 4578.065 kb on - strandat 4578.065 kb on - strandat 4578.065 kb on - strandat 4578.065 kb on - strandat 4578.065 kb on - strandat 4578.065 kb on - strandat 4578.152 kb on + strandat 4578.365 kb on + strand, within OH686_22545at 4578.365 kb on + strand, within OH686_22545at 4578.365 kb on + strand, within OH686_22545at 4578.366 kb on - strand, within OH686_22545at 4578.366 kb on - strand, within OH686_22545at 4578.404 kb on + strand, within OH686_22545at 4578.405 kb on - strand, within OH686_22545at 4578.405 kb on - strand, within OH686_22545at 4578.835 kb on + strand, within OH686_22545at 4578.884 kb on + strand, within OH686_22545at 4578.884 kb on + strand, within OH686_22545at 4578.884 kb on + strand, within OH686_22545at 4578.884 kb on + strand, within OH686_22545at 4578.884 kb on + strand, within OH686_22545at 4578.885 kb on - strand, within OH686_22545at 4578.885 kb on - strand, within OH686_22545at 4578.885 kb on - strand, within OH686_22545at 4578.885 kb on - strand, within OH686_22545at 4578.885 kb on - strand, within OH686_22545at 4578.885 kb on - strand, within OH686_22545at 4578.885 kb on - strand, within OH686_22545at 4578.886 kb on + strand, within OH686_22545at 4578.887 kb on - strand, within OH686_22545at 4578.887 kb on - strand, within OH686_22545at 4579.047 kb on - strand, within OH686_22545at 4579.047 kb on - strand, within OH686_22545at 4579.061 kb on + strand, within OH686_22545at 4579.061 kb on + strand, within OH686_22545at 4579.061 kb on + strand, within OH686_22545at 4579.061 kb on + strand, within OH686_22545at 4579.061 kb on + strand, within OH686_22545at 4579.061 kb on + strand, within OH686_22545at 4579.061 kb on + strand, within OH686_22545at 4579.061 kb on + strand, within OH686_22545at 4579.061 kb on + strand, within OH686_22545at 4579.062 kb on - strand, within OH686_22545at 4579.062 kb on - strand, within OH686_22545at 4579.062 kb on - strand, within OH686_22545at 4579.062 kb on - strand, within OH686_22545at 4579.062 kb on - strand, within OH686_22545at 4579.062 kb on - strand, within OH686_22545at 4579.250 kb on - strand, within OH686_22545at 4579.250 kb on - strand, within OH686_22545at 4579.475 kb on + strand, within OH686_22545at 4579.475 kb on + strand, within OH686_22545at 4579.475 kb on + strand, within OH686_22545at 4579.892 kb on - strand, within OH686_22550at 4579.963 kb on + strand, within OH686_22550at 4579.963 kb on + strand, within OH686_22550at 4579.963 kb on + strand, within OH686_22550at 4579.963 kb on + strand, within OH686_22550at 4579.964 kb on - strand, within OH686_22550at 4579.964 kb on - strand, within OH686_22550at 4579.981 kb on + strand, within OH686_22550at 4579.981 kb on + strand, within OH686_22550at 4580.034 kb on + strand, within OH686_22550at 4580.034 kb on + strand, within OH686_22550at 4580.034 kb on + strand, within OH686_22550at 4580.035 kb on - strand, within OH686_22550at 4580.188 kb on + strandat 4580.188 kb on + strandat 4580.188 kb on + strandat 4580.188 kb on + strandat 4580.188 kb on + strandat 4580.189 kb on - strandat 4580.189 kb on - strandat 4580.189 kb on - strandat 4580.189 kb on - strandat 4580.198 kb on + strandat 4580.198 kb on + strandat 4580.202 kb on + strandat 4580.202 kb on + strandat 4580.202 kb on + strandat 4580.202 kb on + strandat 4580.203 kb on - strandat 4580.203 kb on - strandat 4580.203 kb on - strandat 4580.203 kb on - strandat 4580.258 kb on - strandat 4580.262 kb on + strandat 4580.262 kb on + strandat 4580.343 kb on + strandat 4580.343 kb on + strandat 4580.343 kb on + strandat 4580.343 kb on + strandat 4580.343 kb on + strandat 4580.343 kb on + strandat 4580.343 kb on + strandat 4580.343 kb on + strandat 4580.343 kb on + strandat 4580.343 kb on + strandat 4580.344 kb on - strandat 4580.344 kb on - strandat 4580.344 kb on - strandat 4580.344 kb on - strandat 4580.344 kb on - strandat 4580.344 kb on - strandat 4580.344 kb on - strandat 4580.344 kb on - strandat 4580.344 kb on - strandat 4580.347 kb on + strandat 4580.348 kb on - strandat 4580.348 kb on - strandat 4580.348 kb on - strandat 4580.348 kb on - strandat 4580.367 kb on + strandat 4580.367 kb on + strandat 4580.367 kb on + strandat 4580.367 kb on + strandat 4580.367 kb on + strandat 4580.368 kb on - strandat 4580.368 kb on - strandat 4580.368 kb on - strandat 4580.368 kb on - strandat 4580.368 kb on - strandat 4580.368 kb on - strandat 4580.421 kb on + strand, within OH686_22555at 4580.421 kb on + strand, within OH686_22555at 4580.421 kb on + strand, within OH686_22555at 4580.422 kb on - strand, within OH686_22555at 4580.422 kb on - strand, within OH686_22555at 4580.422 kb on - strand, within OH686_22555at 4580.422 kb on - strand, within OH686_22555at 4580.422 kb on - strand, within OH686_22555at 4580.485 kb on - strand, within OH686_22555at 4580.742 kb on + strand, within OH686_22555at 4580.742 kb on + strand, within OH686_22555at 4580.743 kb on - strand, within OH686_22555at 4580.743 kb on - strand, within OH686_22555

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,577,117 + OH686_22535 0.17 -0.1
4,577,117 + OH686_22535 0.17 +0.7
4,577,117 + OH686_22535 0.17 -2.2
4,577,117 + OH686_22535 0.17 +1.2
4,577,117 + OH686_22535 0.17 -0.8
4,577,117 + OH686_22535 0.17 -0.6
4,577,117 + OH686_22535 0.17 +1.8
4,577,117 + OH686_22535 0.17 -0.1
4,577,117 + OH686_22535 0.17 +1.0
4,577,117 + OH686_22535 0.17 -0.7
4,577,117 + OH686_22535 0.17 +1.0
4,577,117 + OH686_22535 0.17 +1.9
4,577,117 + OH686_22535 0.17 -0.8
4,577,118 - OH686_22535 0.17 -1.5
4,577,118 - OH686_22535 0.17 -1.7
4,577,118 - OH686_22535 0.17 +0.2
4,577,118 - OH686_22535 0.17 -0.3
4,577,118 - OH686_22535 0.17 +0.6
4,577,118 - OH686_22535 0.17 -1.6
4,577,118 - OH686_22535 0.17 -0.6
4,577,118 - OH686_22535 0.17 -0.8
4,577,118 - OH686_22535 0.17 -0.2
4,577,118 - OH686_22535 0.17 -0.7
4,577,118 - OH686_22535 0.17 +0.1
4,577,118 - OH686_22535 0.17 +0.1
4,577,118 - OH686_22535 0.17 -1.4
4,577,118 - OH686_22535 0.17 -0.9
4,577,118 - OH686_22535 0.17 -0.5
4,577,118 - OH686_22535 0.17 -0.6
4,577,118 - OH686_22535 0.17 -1.1
4,577,118 - OH686_22535 0.17 -0.6
4,577,118 - OH686_22535 0.17 -1.4
4,577,145 - OH686_22535 0.20 -1.7
4,577,145 - OH686_22535 0.20 -0.1
4,577,145 - OH686_22535 0.20 -0.4
4,577,145 - OH686_22535 0.20 -0.3
4,577,150 + OH686_22535 0.21 +0.0
4,577,150 + OH686_22535 0.21 -0.7
4,577,150 + OH686_22535 0.21 +0.1
4,577,150 + OH686_22535 0.21 +1.5
4,577,150 + OH686_22535 0.21 -2.1
4,577,150 + OH686_22535 0.21 -0.8
4,577,151 - OH686_22535 0.21 +0.1
4,577,151 - OH686_22535 0.21 -0.0
4,577,151 - OH686_22535 0.21 +0.1
4,577,151 - OH686_22535 0.21 -0.8
4,577,151 - OH686_22535 0.21 -1.7
4,577,151 - OH686_22535 0.21 -0.4
4,577,318 + OH686_22535 0.43 +0.0
4,577,318 + OH686_22535 0.43 -1.5
4,577,318 + OH686_22535 0.43 +0.4
4,577,319 - OH686_22535 0.43 -0.3
4,577,319 - OH686_22535 0.43 -0.4
4,577,319 - OH686_22535 0.43 -0.4
4,577,319 - OH686_22535 0.43 -0.2
4,577,420 + OH686_22535 0.57 +0.7
4,577,420 + OH686_22535 0.57 +0.8
4,577,420 + OH686_22535 0.57 +0.7
4,577,420 + OH686_22535 0.57 -0.6
4,577,420 + OH686_22535 0.57 +0.2
4,577,420 + OH686_22535 0.57 -1.0
4,577,420 + OH686_22535 0.57 -0.1
4,577,420 + OH686_22535 0.57 -1.1
4,577,420 + OH686_22535 0.57 -0.3
4,577,420 + OH686_22535 0.57 -0.7
4,577,420 + OH686_22535 0.57 -0.9
4,577,421 - OH686_22535 0.57 -0.8
4,577,421 - OH686_22535 0.57 -0.4
4,577,421 - OH686_22535 0.57 -1.0
4,577,422 + OH686_22535 0.57 -0.3
4,577,423 - OH686_22535 0.57 +0.6
4,577,423 - OH686_22535 0.57 -0.1
4,577,583 - OH686_22535 0.78 +0.7
4,577,730 + -0.5
4,577,730 + -0.1
4,577,730 + -0.3
4,577,730 + +0.3
4,577,730 + -1.8
4,577,730 + +0.6
4,577,730 + -0.6
4,577,730 + -0.3
4,577,730 + -1.4
4,577,730 + +0.5
4,577,731 - -0.9
4,577,731 - +0.7
4,577,731 - +0.4
4,577,731 - -0.5
4,577,731 - -0.4
4,577,731 - -0.5
4,577,731 - -0.8
4,577,731 - -0.1
4,577,731 - -0.2
4,577,731 - +0.2
4,577,731 - +0.7
4,577,754 + +0.2
4,577,754 + -0.6
4,577,754 + -1.1
4,577,755 - +0.1
4,577,755 - +0.4
4,577,755 - +0.2
4,577,755 - +0.2
4,577,835 - +0.5
4,577,835 - -1.0
4,577,870 + +0.2
4,577,870 + +0.3
4,577,870 + -1.0
4,577,871 - -0.8
4,577,871 - -0.4
4,577,945 + OH686_22540 0.25 -1.1
4,577,945 + OH686_22540 0.25 -0.2
4,577,946 - OH686_22540 0.25 +0.6
4,577,981 - OH686_22540 0.47 +0.7
4,578,064 + -0.3
4,578,064 + -2.3
4,578,064 + +1.0
4,578,064 + -3.1
4,578,064 + -1.1
4,578,064 + -0.6
4,578,064 + -1.9
4,578,064 + -2.0
4,578,064 + -1.3
4,578,064 + -0.4
4,578,064 + -1.3
4,578,064 + -0.7
4,578,064 + -1.6
4,578,064 + -1.6
4,578,064 + -0.6
4,578,065 + -0.4
4,578,065 - -1.6
4,578,065 - -0.6
4,578,065 - +0.5
4,578,065 - -1.0
4,578,065 - +0.4
4,578,065 - -0.1
4,578,152 + +2.0
4,578,365 + OH686_22545 0.17 +1.0
4,578,365 + OH686_22545 0.17 +0.2
4,578,365 + OH686_22545 0.17 -0.7
4,578,366 - OH686_22545 0.17 +0.4
4,578,366 - OH686_22545 0.17 +1.2
4,578,404 + OH686_22545 0.19 +0.6
4,578,405 - OH686_22545 0.19 +1.7
4,578,405 - OH686_22545 0.19 +1.4
4,578,835 + OH686_22545 0.45 +2.4
4,578,884 + OH686_22545 0.48 +1.8
4,578,884 + OH686_22545 0.48 +1.1
4,578,884 + OH686_22545 0.48 -1.8
4,578,884 + OH686_22545 0.48 +1.3
4,578,884 + OH686_22545 0.48 -0.9
4,578,885 - OH686_22545 0.48 -0.0
4,578,885 - OH686_22545 0.48 +0.8
4,578,885 - OH686_22545 0.48 +1.5
4,578,885 - OH686_22545 0.48 +1.0
4,578,885 - OH686_22545 0.48 +0.6
4,578,885 - OH686_22545 0.48 +1.0
4,578,885 - OH686_22545 0.48 -0.3
4,578,886 + OH686_22545 0.48 +1.2
4,578,887 - OH686_22545 0.48 +0.9
4,578,887 - OH686_22545 0.48 -0.4
4,579,047 - OH686_22545 0.57 -0.1
4,579,047 - OH686_22545 0.57 +0.4
4,579,061 + OH686_22545 0.58 -0.4
4,579,061 + OH686_22545 0.58 -0.3
4,579,061 + OH686_22545 0.58 +0.9
4,579,061 + OH686_22545 0.58 +2.0
4,579,061 + OH686_22545 0.58 -0.8
4,579,061 + OH686_22545 0.58 -1.4
4,579,061 + OH686_22545 0.58 +0.4
4,579,061 + OH686_22545 0.58 -1.7
4,579,061 + OH686_22545 0.58 +0.9
4,579,062 - OH686_22545 0.58 +0.9
4,579,062 - OH686_22545 0.58 +1.4
4,579,062 - OH686_22545 0.58 -0.8
4,579,062 - OH686_22545 0.58 -1.1
4,579,062 - OH686_22545 0.58 +2.8
4,579,062 - OH686_22545 0.58 +0.2
4,579,250 - OH686_22545 0.69 +0.4
4,579,250 - OH686_22545 0.69 -1.4
4,579,475 + OH686_22545 0.82 +0.8
4,579,475 + OH686_22545 0.82 +0.6
4,579,475 + OH686_22545 0.82 +0.6
4,579,892 - OH686_22550 0.16 -0.1
4,579,963 + OH686_22550 0.34 +0.4
4,579,963 + OH686_22550 0.34 +1.0
4,579,963 + OH686_22550 0.34 -0.9
4,579,963 + OH686_22550 0.34 -0.1
4,579,964 - OH686_22550 0.34 +0.8
4,579,964 - OH686_22550 0.34 +0.1
4,579,981 + OH686_22550 0.38 -0.2
4,579,981 + OH686_22550 0.38 -0.2
4,580,034 + OH686_22550 0.51 -1.4
4,580,034 + OH686_22550 0.51 -0.4
4,580,034 + OH686_22550 0.51 -0.1
4,580,035 - OH686_22550 0.52 -0.7
4,580,188 + -0.5
4,580,188 + +0.3
4,580,188 + -0.2
4,580,188 + +0.3
4,580,188 + +0.5
4,580,189 - +0.1
4,580,189 - +0.3
4,580,189 - +1.0
4,580,189 - -1.2
4,580,198 + -0.5
4,580,198 + -0.0
4,580,202 + +0.1
4,580,202 + -0.2
4,580,202 + -0.2
4,580,202 + -0.6
4,580,203 - +0.9
4,580,203 - -0.6
4,580,203 - -0.3
4,580,203 - -0.3
4,580,258 - -1.6
4,580,262 + +0.8
4,580,262 + -1.3
4,580,343 + -0.0
4,580,343 + -0.5
4,580,343 + +1.3
4,580,343 + +0.2
4,580,343 + +0.6
4,580,343 + +1.3
4,580,343 + +1.0
4,580,343 + +0.9
4,580,343 + +0.0
4,580,343 + +0.1
4,580,344 - +0.5
4,580,344 - -0.3
4,580,344 - -0.5
4,580,344 - +0.1
4,580,344 - -0.2
4,580,344 - +0.2
4,580,344 - -0.7
4,580,344 - +0.8
4,580,344 - +0.5
4,580,347 + +0.8
4,580,348 - -0.1
4,580,348 - -0.2
4,580,348 - -0.4
4,580,348 - +0.9
4,580,367 + +0.1
4,580,367 + -0.5
4,580,367 + +0.0
4,580,367 + -0.3
4,580,367 + -0.8
4,580,368 - +0.4
4,580,368 - +1.3
4,580,368 - -1.5
4,580,368 - -0.5
4,580,368 - -1.3
4,580,368 - +0.7
4,580,421 + OH686_22555 0.12 -0.4
4,580,421 + OH686_22555 0.12 -0.3
4,580,421 + OH686_22555 0.12 +0.5
4,580,422 - OH686_22555 0.12 +0.2
4,580,422 - OH686_22555 0.12 +0.2
4,580,422 - OH686_22555 0.12 -2.1
4,580,422 - OH686_22555 0.12 +0.4
4,580,422 - OH686_22555 0.12 +0.4
4,580,485 - OH686_22555 0.20 +0.6
4,580,742 + OH686_22555 0.54 -1.1
4,580,742 + OH686_22555 0.54 +0.8
4,580,743 - OH686_22555 0.54 -0.1
4,580,743 - OH686_22555 0.54 -1.4

Or see this region's nucleotide sequence