Strain Fitness in Pseudomonas sp. S08-1 around OH686_22150

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22140 and OH686_22145 are separated by 180 nucleotidesOH686_22145 and OH686_22150 are separated by 108 nucleotidesOH686_22150 and OH686_22155 overlap by 1 nucleotidesOH686_22155 and OH686_22160 are separated by 3 nucleotides OH686_22140: OH686_22140 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 4,507,829 to 4,508,572 _22140 OH686_22145: OH686_22145 - acyl carrier protein, at 4,508,753 to 4,508,986 _22145 OH686_22150: OH686_22150 - beta-ketoacyl-acyl-carrier-protein synthase II, at 4,509,095 to 4,510,339 _22150 OH686_22155: OH686_22155 - aminodeoxychorismate lyase, at 4,510,339 to 4,511,154 _22155 OH686_22160: OH686_22160 - Murein endolytic transglycosylase MltG, at 4,511,158 to 4,512,195 _22160 Position (kb) 4509 4510 4511Strain fitness (log2 ratio) -2 -1 0 1 2at 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.561 kb on + strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.562 kb on - strandat 4508.602 kb on + strandat 4508.602 kb on + strandat 4508.602 kb on + strandat 4508.623 kb on + strandat 4508.699 kb on + strandat 4508.699 kb on + strandat 4508.699 kb on + strandat 4508.699 kb on + strandat 4508.701 kb on + strandat 4508.701 kb on + strandat 4508.701 kb on + strandat 4508.701 kb on + strandat 4508.701 kb on + strandat 4508.701 kb on + strandat 4508.994 kb on + strandat 4509.104 kb on - strandat 4509.278 kb on + strand, within OH686_22150at 4509.278 kb on + strand, within OH686_22150at 4509.279 kb on - strand, within OH686_22150at 4509.279 kb on - strand, within OH686_22150at 4509.279 kb on - strand, within OH686_22150at 4509.324 kb on - strand, within OH686_22150at 4509.394 kb on + strand, within OH686_22150at 4509.566 kb on + strand, within OH686_22150at 4509.566 kb on + strand, within OH686_22150at 4509.566 kb on + strand, within OH686_22150at 4509.566 kb on + strand, within OH686_22150at 4509.567 kb on - strand, within OH686_22150at 4509.567 kb on - strand, within OH686_22150at 4509.567 kb on - strand, within OH686_22150at 4509.567 kb on - strand, within OH686_22150at 4509.567 kb on - strand, within OH686_22150at 4509.632 kb on + strand, within OH686_22150at 4509.857 kb on + strand, within OH686_22150at 4509.857 kb on + strand, within OH686_22150at 4509.857 kb on + strand, within OH686_22150at 4509.858 kb on - strand, within OH686_22150at 4509.858 kb on - strand, within OH686_22150at 4509.858 kb on - strand, within OH686_22150at 4509.992 kb on + strand, within OH686_22150at 4509.992 kb on + strand, within OH686_22150at 4509.992 kb on + strand, within OH686_22150at 4509.993 kb on - strand, within OH686_22150at 4509.993 kb on - strand, within OH686_22150at 4509.993 kb on - strand, within OH686_22150at 4510.397 kb on + strandat 4510.402 kb on + strandat 4510.402 kb on + strandat 4510.402 kb on + strandat 4510.403 kb on - strandat 4510.403 kb on - strandat 4510.672 kb on + strand, within OH686_22155at 4510.673 kb on - strand, within OH686_22155at 4510.700 kb on + strand, within OH686_22155at 4510.700 kb on + strand, within OH686_22155at 4510.701 kb on - strand, within OH686_22155at 4510.701 kb on - strand, within OH686_22155at 4510.701 kb on - strand, within OH686_22155at 4511.054 kb on - strand, within OH686_22155at 4511.054 kb on - strand, within OH686_22155

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,508,561 + +1.0
4,508,561 + -0.4
4,508,561 + +0.0
4,508,561 + +0.4
4,508,561 + +0.5
4,508,561 + +1.2
4,508,561 + +1.2
4,508,561 + -0.3
4,508,561 + -0.4
4,508,561 + -1.4
4,508,561 + -0.7
4,508,561 + -0.7
4,508,561 + -1.8
4,508,561 + -0.9
4,508,561 + -2.0
4,508,562 - +0.9
4,508,562 - +0.0
4,508,562 - -0.5
4,508,562 - +0.0
4,508,562 - -0.8
4,508,562 - -0.4
4,508,562 - -1.4
4,508,562 - -0.7
4,508,562 - -0.1
4,508,562 - -0.6
4,508,562 - -1.0
4,508,562 - +1.0
4,508,562 - -0.2
4,508,562 - -2.2
4,508,562 - -1.4
4,508,562 - +0.7
4,508,562 - -1.2
4,508,562 - -0.1
4,508,562 - +0.0
4,508,562 - -0.8
4,508,562 - +0.5
4,508,562 - +0.0
4,508,602 + +0.7
4,508,602 + -1.1
4,508,602 + -0.3
4,508,623 + -0.3
4,508,699 + +0.6
4,508,699 + +0.2
4,508,699 + -2.3
4,508,699 + -0.2
4,508,701 + +0.3
4,508,701 + -0.1
4,508,701 + +0.3
4,508,701 + +0.3
4,508,701 + -0.6
4,508,701 + +0.5
4,508,994 + -0.5
4,509,104 - +0.7
4,509,278 + OH686_22150 0.15 -0.3
4,509,278 + OH686_22150 0.15 +0.6
4,509,279 - OH686_22150 0.15 +2.0
4,509,279 - OH686_22150 0.15 -0.8
4,509,279 - OH686_22150 0.15 +0.6
4,509,324 - OH686_22150 0.18 -0.3
4,509,394 + OH686_22150 0.24 -0.1
4,509,566 + OH686_22150 0.38 +2.0
4,509,566 + OH686_22150 0.38 +1.6
4,509,566 + OH686_22150 0.38 +2.3
4,509,566 + OH686_22150 0.38 +1.0
4,509,567 - OH686_22150 0.38 -0.4
4,509,567 - OH686_22150 0.38 +0.8
4,509,567 - OH686_22150 0.38 +0.7
4,509,567 - OH686_22150 0.38 -0.6
4,509,567 - OH686_22150 0.38 +0.4
4,509,632 + OH686_22150 0.43 +1.0
4,509,857 + OH686_22150 0.61 +2.3
4,509,857 + OH686_22150 0.61 +1.0
4,509,857 + OH686_22150 0.61 +2.2
4,509,858 - OH686_22150 0.61 +0.0
4,509,858 - OH686_22150 0.61 +0.7
4,509,858 - OH686_22150 0.61 +1.2
4,509,992 + OH686_22150 0.72 +2.4
4,509,992 + OH686_22150 0.72 +1.6
4,509,992 + OH686_22150 0.72 +1.3
4,509,993 - OH686_22150 0.72 -2.2
4,509,993 - OH686_22150 0.72 +1.3
4,509,993 - OH686_22150 0.72 +0.6
4,510,397 + -1.9
4,510,402 + -1.5
4,510,402 + -1.2
4,510,402 + +0.4
4,510,403 - -0.2
4,510,403 - -0.4
4,510,672 + OH686_22155 0.41 -0.8
4,510,673 - OH686_22155 0.41 -0.9
4,510,700 + OH686_22155 0.44 +0.4
4,510,700 + OH686_22155 0.44 -1.4
4,510,701 - OH686_22155 0.44 -0.7
4,510,701 - OH686_22155 0.44 +0.2
4,510,701 - OH686_22155 0.44 -0.9
4,511,054 - OH686_22155 0.88 -0.4
4,511,054 - OH686_22155 0.88 -0.3

Or see this region's nucleotide sequence