Strain Fitness in Pseudomonas sp. S08-1 around OH686_21350

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21330 and OH686_21335 are separated by 186 nucleotidesOH686_21335 and OH686_21340 are separated by 62 nucleotidesOH686_21340 and OH686_21345 are separated by 104 nucleotidesOH686_21345 and OH686_21350 are separated by 72 nucleotidesOH686_21350 and OH686_21355 are separated by 39 nucleotidesOH686_21355 and OH686_21360 are separated by 318 nucleotides OH686_21330: OH686_21330 - aspartate kinase, monofunctional class, at 4,371,376 to 4,372,614 _21330 OH686_21335: OH686_21335 - carbon storage regulator, at 4,372,801 to 4,372,986 _21335 OH686_21340: OH686_21340 - tRNA-Ser, at 4,373,049 to 4,373,139 _21340 OH686_21345: OH686_21345 - tRNA-Arg, at 4,373,244 to 4,373,320 _21345 OH686_21350: OH686_21350 - tRNA-Arg, at 4,373,393 to 4,373,469 _21350 OH686_21355: OH686_21355 - hypothetical protein, at 4,373,509 to 4,374,015 _21355 OH686_21360: OH686_21360 - magnesium transporter, at 4,374,334 to 4,375,776 _21360 Position (kb) 4373 4374Strain fitness (log2 ratio) -2 -1 0 1 2at 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.615 kb on + strandat 4372.616 kb on - strandat 4372.616 kb on - strandat 4372.616 kb on - strandat 4372.616 kb on - strandat 4372.616 kb on - strandat 4372.616 kb on - strandat 4372.616 kb on - strandat 4372.616 kb on - strandat 4372.616 kb on - strandat 4372.616 kb on - strandat 4372.622 kb on + strandat 4372.622 kb on + strandat 4372.623 kb on - strandat 4372.623 kb on - strandat 4372.703 kb on + strandat 4372.703 kb on + strandat 4372.703 kb on + strandat 4372.703 kb on + strandat 4372.703 kb on + strandat 4372.703 kb on + strandat 4372.704 kb on - strandat 4372.704 kb on - strandat 4372.704 kb on - strandat 4372.704 kb on - strandat 4372.723 kb on - strandat 4372.729 kb on + strandat 4372.729 kb on + strandat 4372.729 kb on + strandat 4372.729 kb on + strandat 4372.729 kb on + strandat 4372.731 kb on + strandat 4372.731 kb on + strandat 4372.752 kb on + strandat 4372.882 kb on - strand, within OH686_21335at 4373.251 kb on + strandat 4373.251 kb on + strandat 4373.251 kb on + strandat 4373.251 kb on + strandat 4373.251 kb on + strandat 4373.251 kb on + strandat 4373.251 kb on + strandat 4373.251 kb on + strandat 4373.251 kb on + strandat 4373.251 kb on + strandat 4373.251 kb on + strandat 4373.264 kb on + strand, within OH686_21345at 4373.264 kb on + strand, within OH686_21345at 4373.321 kb on + strandat 4373.322 kb on - strandat 4373.379 kb on + strandat 4373.390 kb on + strandat 4373.401 kb on - strand, within OH686_21350at 4373.401 kb on - strand, within OH686_21350at 4373.401 kb on - strand, within OH686_21350at 4373.401 kb on - strand, within OH686_21350at 4373.401 kb on - strand, within OH686_21350at 4373.401 kb on - strand, within OH686_21350at 4373.401 kb on - strand, within OH686_21350at 4373.401 kb on - strand, within OH686_21350at 4373.414 kb on - strand, within OH686_21350at 4373.530 kb on + strandat 4373.531 kb on - strandat 4373.531 kb on - strandat 4373.531 kb on - strandat 4373.540 kb on + strandat 4373.541 kb on - strandat 4373.541 kb on - strandat 4373.541 kb on - strandat 4373.541 kb on - strandat 4373.585 kb on + strand, within OH686_21355at 4373.585 kb on + strand, within OH686_21355at 4373.585 kb on + strand, within OH686_21355at 4373.585 kb on + strand, within OH686_21355at 4373.585 kb on + strand, within OH686_21355at 4373.585 kb on + strand, within OH686_21355at 4373.586 kb on - strand, within OH686_21355at 4373.586 kb on - strand, within OH686_21355at 4373.647 kb on + strand, within OH686_21355at 4373.647 kb on + strand, within OH686_21355at 4373.647 kb on + strand, within OH686_21355at 4373.647 kb on + strand, within OH686_21355at 4373.647 kb on + strand, within OH686_21355at 4373.647 kb on + strand, within OH686_21355at 4373.647 kb on + strand, within OH686_21355at 4373.648 kb on - strand, within OH686_21355at 4373.648 kb on - strand, within OH686_21355at 4373.648 kb on - strand, within OH686_21355at 4373.648 kb on - strand, within OH686_21355at 4373.674 kb on + strand, within OH686_21355at 4373.674 kb on + strand, within OH686_21355at 4373.674 kb on + strand, within OH686_21355at 4373.675 kb on - strand, within OH686_21355at 4373.675 kb on - strand, within OH686_21355at 4373.847 kb on + strand, within OH686_21355at 4373.847 kb on + strand, within OH686_21355at 4373.847 kb on + strand, within OH686_21355at 4373.847 kb on + strand, within OH686_21355at 4373.848 kb on - strand, within OH686_21355at 4373.854 kb on - strand, within OH686_21355at 4373.855 kb on + strand, within OH686_21355at 4373.855 kb on + strand, within OH686_21355at 4373.855 kb on + strand, within OH686_21355at 4373.855 kb on + strand, within OH686_21355at 4373.855 kb on + strand, within OH686_21355at 4373.855 kb on + strand, within OH686_21355at 4373.855 kb on + strand, within OH686_21355at 4373.855 kb on + strand, within OH686_21355at 4373.855 kb on + strand, within OH686_21355at 4373.855 kb on + strand, within OH686_21355at 4373.856 kb on - strand, within OH686_21355at 4373.856 kb on - strand, within OH686_21355at 4373.856 kb on - strand, within OH686_21355at 4373.856 kb on - strand, within OH686_21355at 4373.856 kb on - strand, within OH686_21355at 4373.856 kb on - strand, within OH686_21355at 4373.856 kb on - strand, within OH686_21355at 4373.856 kb on - strand, within OH686_21355at 4373.856 kb on - strand, within OH686_21355at 4373.856 kb on - strand, within OH686_21355at 4373.906 kb on + strand, within OH686_21355at 4373.906 kb on + strand, within OH686_21355at 4373.906 kb on + strand, within OH686_21355at 4373.906 kb on + strand, within OH686_21355at 4373.906 kb on + strand, within OH686_21355at 4373.907 kb on - strand, within OH686_21355at 4373.907 kb on - strand, within OH686_21355at 4373.907 kb on - strand, within OH686_21355at 4373.907 kb on - strand, within OH686_21355at 4373.907 kb on - strand, within OH686_21355at 4373.946 kb on + strand, within OH686_21355at 4373.946 kb on + strand, within OH686_21355at 4373.946 kb on + strand, within OH686_21355at 4373.972 kb on + strandat 4374.051 kb on - strandat 4374.051 kb on - strandat 4374.051 kb on - strandat 4374.126 kb on + strandat 4374.241 kb on + strandat 4374.242 kb on - strandat 4374.248 kb on + strandat 4374.248 kb on + strandat 4374.248 kb on + strandat 4374.248 kb on + strandat 4374.249 kb on - strandat 4374.249 kb on - strandat 4374.249 kb on - strandat 4374.249 kb on - strandat 4374.249 kb on - strandat 4374.249 kb on - strandat 4374.252 kb on + strandat 4374.252 kb on + strandat 4374.252 kb on + strandat 4374.252 kb on + strandat 4374.253 kb on - strandat 4374.261 kb on + strandat 4374.261 kb on + strandat 4374.261 kb on + strandat 4374.262 kb on - strandat 4374.333 kb on + strandat 4374.333 kb on + strandat 4374.333 kb on + strandat 4374.344 kb on + strandat 4374.344 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,372,615 + -1.0
4,372,615 + +0.2
4,372,615 + +1.0
4,372,615 + +0.7
4,372,615 + -0.2
4,372,615 + +0.8
4,372,615 + -1.1
4,372,615 + -0.3
4,372,615 + -0.1
4,372,615 + +0.1
4,372,615 + -0.6
4,372,615 + +1.0
4,372,615 + -0.8
4,372,615 + -1.0
4,372,615 + +0.3
4,372,615 + +0.2
4,372,616 - +0.2
4,372,616 - -1.5
4,372,616 - -1.6
4,372,616 - -1.3
4,372,616 - -1.9
4,372,616 - +0.3
4,372,616 - -0.0
4,372,616 - -2.2
4,372,616 - -0.4
4,372,616 - -1.8
4,372,622 + +0.1
4,372,622 + +0.4
4,372,623 - -1.2
4,372,623 - +0.1
4,372,703 + +0.5
4,372,703 + +0.3
4,372,703 + +0.4
4,372,703 + +0.3
4,372,703 + +0.9
4,372,703 + -0.1
4,372,704 - -1.5
4,372,704 - -1.0
4,372,704 - -0.8
4,372,704 - -0.3
4,372,723 - -0.3
4,372,729 + +0.9
4,372,729 + +0.2
4,372,729 + -0.1
4,372,729 + +0.8
4,372,729 + +1.5
4,372,731 + +0.4
4,372,731 + +0.2
4,372,752 + +1.5
4,372,882 - OH686_21335 0.44 -0.0
4,373,251 + +1.0
4,373,251 + +0.7
4,373,251 + +0.1
4,373,251 + +0.4
4,373,251 + -1.8
4,373,251 + +0.5
4,373,251 + -0.0
4,373,251 + -0.6
4,373,251 + +1.1
4,373,251 + -0.5
4,373,251 + -0.0
4,373,264 + OH686_21345 0.26 -0.6
4,373,264 + OH686_21345 0.26 +0.6
4,373,321 + +1.3
4,373,322 - +0.3
4,373,379 + +0.2
4,373,390 + +1.6
4,373,401 - OH686_21350 0.10 +0.6
4,373,401 - OH686_21350 0.10 +2.0
4,373,401 - OH686_21350 0.10 +1.3
4,373,401 - OH686_21350 0.10 +1.7
4,373,401 - OH686_21350 0.10 +2.0
4,373,401 - OH686_21350 0.10 +1.2
4,373,401 - OH686_21350 0.10 +1.6
4,373,401 - OH686_21350 0.10 -0.3
4,373,414 - OH686_21350 0.27 +1.8
4,373,530 + +0.0
4,373,531 - -0.3
4,373,531 - -0.2
4,373,531 - +0.4
4,373,540 + -0.9
4,373,541 - +0.5
4,373,541 - +0.3
4,373,541 - +0.1
4,373,541 - +0.2
4,373,585 + OH686_21355 0.15 -0.5
4,373,585 + OH686_21355 0.15 -0.2
4,373,585 + OH686_21355 0.15 -2.6
4,373,585 + OH686_21355 0.15 -0.8
4,373,585 + OH686_21355 0.15 -0.7
4,373,585 + OH686_21355 0.15 +0.2
4,373,586 - OH686_21355 0.15 +0.6
4,373,586 - OH686_21355 0.15 -0.1
4,373,647 + OH686_21355 0.27 -1.6
4,373,647 + OH686_21355 0.27 -0.5
4,373,647 + OH686_21355 0.27 -0.7
4,373,647 + OH686_21355 0.27 -0.1
4,373,647 + OH686_21355 0.27 -1.8
4,373,647 + OH686_21355 0.27 -0.9
4,373,647 + OH686_21355 0.27 -0.2
4,373,648 - OH686_21355 0.27 +2.0
4,373,648 - OH686_21355 0.27 +0.5
4,373,648 - OH686_21355 0.27 +0.7
4,373,648 - OH686_21355 0.27 -0.0
4,373,674 + OH686_21355 0.33 -1.4
4,373,674 + OH686_21355 0.33 +0.3
4,373,674 + OH686_21355 0.33 -0.8
4,373,675 - OH686_21355 0.33 +0.8
4,373,675 - OH686_21355 0.33 +0.7
4,373,847 + OH686_21355 0.67 -0.4
4,373,847 + OH686_21355 0.67 +0.2
4,373,847 + OH686_21355 0.67 -0.0
4,373,847 + OH686_21355 0.67 -0.9
4,373,848 - OH686_21355 0.67 -0.0
4,373,854 - OH686_21355 0.68 +0.4
4,373,855 + OH686_21355 0.68 +0.2
4,373,855 + OH686_21355 0.68 -0.9
4,373,855 + OH686_21355 0.68 -1.4
4,373,855 + OH686_21355 0.68 -0.0
4,373,855 + OH686_21355 0.68 -1.1
4,373,855 + OH686_21355 0.68 -2.3
4,373,855 + OH686_21355 0.68 -0.8
4,373,855 + OH686_21355 0.68 +0.2
4,373,855 + OH686_21355 0.68 -0.5
4,373,855 + OH686_21355 0.68 -0.5
4,373,856 - OH686_21355 0.68 +0.2
4,373,856 - OH686_21355 0.68 -1.1
4,373,856 - OH686_21355 0.68 +0.1
4,373,856 - OH686_21355 0.68 -0.6
4,373,856 - OH686_21355 0.68 -0.5
4,373,856 - OH686_21355 0.68 -0.0
4,373,856 - OH686_21355 0.68 +1.0
4,373,856 - OH686_21355 0.68 -0.7
4,373,856 - OH686_21355 0.68 -0.6
4,373,856 - OH686_21355 0.68 +0.4
4,373,906 + OH686_21355 0.78 -0.1
4,373,906 + OH686_21355 0.78 +0.5
4,373,906 + OH686_21355 0.78 +0.2
4,373,906 + OH686_21355 0.78 -1.0
4,373,906 + OH686_21355 0.78 +0.6
4,373,907 - OH686_21355 0.79 +0.6
4,373,907 - OH686_21355 0.79 -1.2
4,373,907 - OH686_21355 0.79 +0.0
4,373,907 - OH686_21355 0.79 +0.1
4,373,907 - OH686_21355 0.79 +0.7
4,373,946 + OH686_21355 0.86 -0.0
4,373,946 + OH686_21355 0.86 -0.9
4,373,946 + OH686_21355 0.86 -0.7
4,373,972 + -2.3
4,374,051 - -0.4
4,374,051 - +0.8
4,374,051 - -0.8
4,374,126 + +0.3
4,374,241 + -2.3
4,374,242 - -0.3
4,374,248 + -2.5
4,374,248 + +1.1
4,374,248 + -1.3
4,374,248 + -1.3
4,374,249 - +0.1
4,374,249 - -0.9
4,374,249 - -0.7
4,374,249 - -0.5
4,374,249 - +0.2
4,374,249 - -0.1
4,374,252 + -1.1
4,374,252 + -0.0
4,374,252 + -1.1
4,374,252 + -1.7
4,374,253 - +1.3
4,374,261 + -2.4
4,374,261 + -1.2
4,374,261 + -0.3
4,374,262 - -0.5
4,374,333 + -0.0
4,374,333 + -0.4
4,374,333 + -0.6
4,374,344 + +0.5
4,374,344 + +1.4

Or see this region's nucleotide sequence