Strain Fitness in Pseudomonas sp. S08-1 around OH686_20610

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20600 and OH686_20605 are separated by 78 nucleotidesOH686_20605 and OH686_20610 are separated by 4 nucleotidesOH686_20610 and OH686_20615 are separated by 74 nucleotidesOH686_20615 and OH686_20620 overlap by 4 nucleotides OH686_20600: OH686_20600 - Aerotaxis sensor receptor protein, at 4,204,411 to 4,205,976 _20600 OH686_20605: OH686_20605 - Uncharacterized conserved protein YfiP, contains DTW domain, at 4,206,055 to 4,206,645 _20605 OH686_20610: OH686_20610 - hypothetical protein, at 4,206,650 to 4,207,006 _20610 OH686_20615: OH686_20615 - redox-sensitive transcriptional activator SoxR, at 4,207,081 to 4,207,536 _20615 OH686_20620: OH686_20620 - Type I secretion membrane fusion protein, HlyD family, at 4,207,533 to 4,208,891 _20620 Position (kb) 4206 4207 4208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4205.679 kb on + strand, within OH686_20600at 4205.941 kb on + strandat 4205.941 kb on + strandat 4205.942 kb on - strandat 4205.942 kb on - strandat 4205.975 kb on - strandat 4205.975 kb on - strandat 4206.618 kb on + strandat 4206.618 kb on + strandat 4206.619 kb on - strandat 4206.622 kb on + strandat 4206.622 kb on + strandat 4206.622 kb on + strandat 4206.622 kb on + strandat 4206.622 kb on + strandat 4206.622 kb on + strandat 4206.622 kb on + strandat 4206.622 kb on + strandat 4206.622 kb on + strandat 4206.622 kb on + strandat 4206.622 kb on + strandat 4206.623 kb on - strandat 4206.623 kb on - strandat 4206.623 kb on - strandat 4206.623 kb on - strandat 4206.623 kb on - strandat 4206.623 kb on - strandat 4206.623 kb on - strandat 4206.882 kb on + strand, within OH686_20610at 4206.882 kb on + strand, within OH686_20610at 4206.882 kb on + strand, within OH686_20610at 4206.882 kb on + strand, within OH686_20610at 4206.883 kb on - strand, within OH686_20610at 4206.883 kb on - strand, within OH686_20610at 4206.883 kb on - strand, within OH686_20610at 4206.985 kb on + strandat 4206.985 kb on + strandat 4206.998 kb on + strandat 4206.998 kb on + strandat 4206.998 kb on + strandat 4206.999 kb on - strandat 4206.999 kb on - strandat 4207.168 kb on + strand, within OH686_20615at 4207.168 kb on + strand, within OH686_20615at 4207.168 kb on + strand, within OH686_20615at 4207.169 kb on - strand, within OH686_20615at 4207.585 kb on + strandat 4207.585 kb on + strandat 4207.585 kb on + strandat 4207.585 kb on + strandat 4207.586 kb on - strandat 4207.586 kb on - strandat 4207.586 kb on - strandat 4207.705 kb on + strand, within OH686_20620at 4207.705 kb on + strand, within OH686_20620at 4207.705 kb on + strand, within OH686_20620at 4207.705 kb on + strand, within OH686_20620at 4207.705 kb on + strand, within OH686_20620at 4207.705 kb on + strand, within OH686_20620at 4207.705 kb on + strand, within OH686_20620at 4207.706 kb on - strand, within OH686_20620at 4207.706 kb on - strand, within OH686_20620at 4207.706 kb on - strand, within OH686_20620at 4207.706 kb on - strand, within OH686_20620at 4207.706 kb on - strand, within OH686_20620at 4207.777 kb on + strand, within OH686_20620at 4207.777 kb on + strand, within OH686_20620at 4207.777 kb on + strand, within OH686_20620at 4207.777 kb on + strand, within OH686_20620at 4207.778 kb on - strand, within OH686_20620at 4207.778 kb on - strand, within OH686_20620at 4207.786 kb on + strand, within OH686_20620at 4207.786 kb on + strand, within OH686_20620at 4207.786 kb on + strand, within OH686_20620at 4207.786 kb on + strand, within OH686_20620at 4207.786 kb on + strand, within OH686_20620at 4207.786 kb on + strand, within OH686_20620at 4207.786 kb on + strand, within OH686_20620at 4207.786 kb on + strand, within OH686_20620at 4207.786 kb on + strand, within OH686_20620at 4207.786 kb on + strand, within OH686_20620at 4207.787 kb on - strand, within OH686_20620at 4207.787 kb on - strand, within OH686_20620at 4207.787 kb on - strand, within OH686_20620at 4207.787 kb on - strand, within OH686_20620at 4207.787 kb on - strand, within OH686_20620at 4207.787 kb on - strand, within OH686_20620at 4207.787 kb on - strand, within OH686_20620at 4207.787 kb on - strand, within OH686_20620at 4207.787 kb on - strand, within OH686_20620at 4207.787 kb on - strand, within OH686_20620at 4207.787 kb on - strand, within OH686_20620at 4207.792 kb on + strand, within OH686_20620at 4207.793 kb on - strand, within OH686_20620at 4207.793 kb on - strand, within OH686_20620at 4207.966 kb on + strand, within OH686_20620at 4207.966 kb on + strand, within OH686_20620at 4207.966 kb on + strand, within OH686_20620at 4207.967 kb on - strand, within OH686_20620at 4207.967 kb on - strand, within OH686_20620at 4207.967 kb on - strand, within OH686_20620at 4207.967 kb on - strand, within OH686_20620at 4207.967 kb on - strand, within OH686_20620at 4207.967 kb on - strand, within OH686_20620

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,205,679 + OH686_20600 0.81 -1.7
4,205,941 + +0.7
4,205,941 + +0.8
4,205,942 - -0.9
4,205,942 - +0.3
4,205,975 - +0.6
4,205,975 - -0.2
4,206,618 + -0.3
4,206,618 + -0.9
4,206,619 - -2.7
4,206,622 + -0.3
4,206,622 + -1.5
4,206,622 + +0.3
4,206,622 + +0.6
4,206,622 + -0.7
4,206,622 + -0.2
4,206,622 + -0.6
4,206,622 + -0.7
4,206,622 + -2.9
4,206,622 + -0.6
4,206,622 + +0.4
4,206,623 - +0.2
4,206,623 - -0.5
4,206,623 - +0.2
4,206,623 - -0.9
4,206,623 - -1.7
4,206,623 - +0.2
4,206,623 - -0.3
4,206,882 + OH686_20610 0.65 +0.9
4,206,882 + OH686_20610 0.65 -0.2
4,206,882 + OH686_20610 0.65 -0.1
4,206,882 + OH686_20610 0.65 +0.2
4,206,883 - OH686_20610 0.65 +0.8
4,206,883 - OH686_20610 0.65 +1.2
4,206,883 - OH686_20610 0.65 +0.8
4,206,985 + -0.5
4,206,985 + +0.3
4,206,998 + +0.0
4,206,998 + -0.6
4,206,998 + +0.3
4,206,999 - -0.0
4,206,999 - -0.2
4,207,168 + OH686_20615 0.19 +0.1
4,207,168 + OH686_20615 0.19 +0.6
4,207,168 + OH686_20615 0.19 -1.7
4,207,169 - OH686_20615 0.19 +0.3
4,207,585 + +0.0
4,207,585 + -1.5
4,207,585 + -1.2
4,207,585 + +2.0
4,207,586 - +1.4
4,207,586 - +0.8
4,207,586 - +0.0
4,207,705 + OH686_20620 0.13 -0.1
4,207,705 + OH686_20620 0.13 +0.2
4,207,705 + OH686_20620 0.13 +0.6
4,207,705 + OH686_20620 0.13 +0.2
4,207,705 + OH686_20620 0.13 +0.8
4,207,705 + OH686_20620 0.13 +1.4
4,207,705 + OH686_20620 0.13 -2.3
4,207,706 - OH686_20620 0.13 +0.1
4,207,706 - OH686_20620 0.13 +0.5
4,207,706 - OH686_20620 0.13 -1.3
4,207,706 - OH686_20620 0.13 +0.7
4,207,706 - OH686_20620 0.13 -1.1
4,207,777 + OH686_20620 0.18 +0.5
4,207,777 + OH686_20620 0.18 +0.0
4,207,777 + OH686_20620 0.18 +0.4
4,207,777 + OH686_20620 0.18 +0.6
4,207,778 - OH686_20620 0.18 -0.3
4,207,778 - OH686_20620 0.18 +0.7
4,207,786 + OH686_20620 0.19 -1.1
4,207,786 + OH686_20620 0.19 -0.5
4,207,786 + OH686_20620 0.19 -1.6
4,207,786 + OH686_20620 0.19 -2.6
4,207,786 + OH686_20620 0.19 -0.4
4,207,786 + OH686_20620 0.19 -1.6
4,207,786 + OH686_20620 0.19 -0.0
4,207,786 + OH686_20620 0.19 +0.4
4,207,786 + OH686_20620 0.19 +0.1
4,207,786 + OH686_20620 0.19 +0.4
4,207,787 - OH686_20620 0.19 +0.2
4,207,787 - OH686_20620 0.19 -1.5
4,207,787 - OH686_20620 0.19 -0.0
4,207,787 - OH686_20620 0.19 +0.8
4,207,787 - OH686_20620 0.19 -0.3
4,207,787 - OH686_20620 0.19 -1.6
4,207,787 - OH686_20620 0.19 +0.2
4,207,787 - OH686_20620 0.19 -0.6
4,207,787 - OH686_20620 0.19 -0.4
4,207,787 - OH686_20620 0.19 +0.0
4,207,787 - OH686_20620 0.19 +1.2
4,207,792 + OH686_20620 0.19 +0.1
4,207,793 - OH686_20620 0.19 +0.8
4,207,793 - OH686_20620 0.19 -0.3
4,207,966 + OH686_20620 0.32 -0.5
4,207,966 + OH686_20620 0.32 -0.7
4,207,966 + OH686_20620 0.32 -0.8
4,207,967 - OH686_20620 0.32 -2.4
4,207,967 - OH686_20620 0.32 +0.3
4,207,967 - OH686_20620 0.32 -0.3
4,207,967 - OH686_20620 0.32 -0.0
4,207,967 - OH686_20620 0.32 +0.1
4,207,967 - OH686_20620 0.32 +0.1

Or see this region's nucleotide sequence