Strain Fitness in Pseudomonas sp. S08-1 around OH686_20360

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20355 and OH686_20360 are separated by 0 nucleotidesOH686_20360 and OH686_20365 are separated by 215 nucleotides OH686_20355: OH686_20355 - Putative hydrolase, at 4,156,923 to 4,157,855 _20355 OH686_20360: OH686_20360 - Aerobic glycerol-3-phosphate dehydrogenase , at 4,157,856 to 4,159,394 _20360 OH686_20365: OH686_20365 - Glycerol-3-phosphate regulon repressor GlpR, at 4,159,610 to 4,160,368 _20365 Position (kb) 4157 4158 4159 4160Strain fitness (log2 ratio) -2 -1 0 1 2at 4156.942 kb on + strandat 4156.942 kb on + strandat 4156.942 kb on + strandat 4156.943 kb on - strandat 4156.943 kb on - strandat 4156.943 kb on - strandat 4156.943 kb on - strandat 4156.943 kb on - strandat 4156.954 kb on - strandat 4156.954 kb on - strandat 4157.038 kb on + strand, within OH686_20355at 4157.039 kb on - strand, within OH686_20355at 4157.039 kb on - strand, within OH686_20355at 4157.039 kb on - strand, within OH686_20355at 4157.142 kb on + strand, within OH686_20355at 4157.142 kb on + strand, within OH686_20355at 4157.143 kb on - strand, within OH686_20355at 4157.143 kb on - strand, within OH686_20355at 4157.143 kb on - strand, within OH686_20355at 4157.149 kb on + strand, within OH686_20355at 4157.149 kb on + strand, within OH686_20355at 4157.149 kb on + strand, within OH686_20355at 4157.149 kb on + strand, within OH686_20355at 4157.149 kb on + strand, within OH686_20355at 4157.149 kb on + strand, within OH686_20355at 4157.149 kb on + strand, within OH686_20355at 4157.149 kb on + strand, within OH686_20355at 4157.149 kb on + strand, within OH686_20355at 4157.150 kb on - strand, within OH686_20355at 4157.150 kb on - strand, within OH686_20355at 4157.157 kb on + strand, within OH686_20355at 4157.157 kb on + strand, within OH686_20355at 4157.157 kb on + strand, within OH686_20355at 4157.158 kb on - strand, within OH686_20355at 4157.158 kb on - strand, within OH686_20355at 4157.158 kb on - strand, within OH686_20355at 4157.523 kb on + strand, within OH686_20355at 4157.523 kb on + strand, within OH686_20355at 4157.523 kb on + strand, within OH686_20355at 4157.523 kb on + strand, within OH686_20355at 4157.524 kb on - strand, within OH686_20355at 4157.524 kb on - strand, within OH686_20355at 4157.524 kb on - strand, within OH686_20355at 4157.524 kb on - strand, within OH686_20355at 4157.524 kb on - strand, within OH686_20355at 4157.524 kb on - strand, within OH686_20355at 4157.524 kb on - strand, within OH686_20355at 4157.572 kb on + strand, within OH686_20355at 4157.572 kb on + strand, within OH686_20355at 4157.572 kb on + strand, within OH686_20355at 4157.572 kb on + strand, within OH686_20355at 4157.573 kb on - strand, within OH686_20355at 4157.573 kb on - strand, within OH686_20355at 4157.573 kb on - strand, within OH686_20355at 4157.573 kb on - strand, within OH686_20355at 4157.674 kb on + strand, within OH686_20355at 4157.674 kb on + strand, within OH686_20355at 4157.674 kb on + strand, within OH686_20355at 4157.674 kb on + strand, within OH686_20355at 4157.674 kb on + strand, within OH686_20355at 4157.675 kb on - strand, within OH686_20355at 4157.675 kb on - strand, within OH686_20355at 4157.690 kb on + strand, within OH686_20355at 4157.690 kb on + strand, within OH686_20355at 4157.691 kb on - strand, within OH686_20355at 4157.691 kb on - strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.692 kb on + strand, within OH686_20355at 4157.693 kb on - strand, within OH686_20355at 4157.693 kb on - strand, within OH686_20355at 4157.693 kb on - strand, within OH686_20355at 4157.693 kb on - strand, within OH686_20355at 4157.693 kb on - strand, within OH686_20355at 4157.693 kb on - strand, within OH686_20355at 4157.693 kb on - strand, within OH686_20355at 4157.693 kb on - strand, within OH686_20355at 4157.693 kb on - strand, within OH686_20355at 4157.693 kb on - strand, within OH686_20355at 4157.693 kb on - strand, within OH686_20355at 4159.408 kb on - strandat 4159.408 kb on - strandat 4159.408 kb on - strandat 4159.408 kb on - strandat 4159.415 kb on - strandat 4159.415 kb on - strandat 4159.415 kb on - strandat 4159.425 kb on + strandat 4159.426 kb on - strandat 4159.447 kb on + strandat 4159.448 kb on - strandat 4159.536 kb on + strandat 4159.618 kb on + strandat 4159.618 kb on + strandat 4159.618 kb on + strandat 4159.618 kb on + strandat 4159.619 kb on - strandat 4159.619 kb on - strandat 4159.812 kb on + strand, within OH686_20365at 4159.813 kb on - strand, within OH686_20365at 4160.091 kb on + strand, within OH686_20365at 4160.091 kb on + strand, within OH686_20365at 4160.092 kb on - strand, within OH686_20365at 4160.092 kb on - strand, within OH686_20365at 4160.092 kb on - strand, within OH686_20365at 4160.167 kb on - strand, within OH686_20365at 4160.306 kb on - strandat 4160.313 kb on + strandat 4160.313 kb on + strandat 4160.314 kb on - strandat 4160.314 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,156,942 + -0.1
4,156,942 + -0.2
4,156,942 + +0.4
4,156,943 - -0.0
4,156,943 - +0.2
4,156,943 - +0.8
4,156,943 - -0.1
4,156,943 - -0.7
4,156,954 - +0.5
4,156,954 - -0.0
4,157,038 + OH686_20355 0.12 -0.2
4,157,039 - OH686_20355 0.12 +1.3
4,157,039 - OH686_20355 0.12 -0.2
4,157,039 - OH686_20355 0.12 +0.3
4,157,142 + OH686_20355 0.23 +0.1
4,157,142 + OH686_20355 0.23 +0.0
4,157,143 - OH686_20355 0.24 -0.6
4,157,143 - OH686_20355 0.24 +0.2
4,157,143 - OH686_20355 0.24 +0.3
4,157,149 + OH686_20355 0.24 -0.3
4,157,149 + OH686_20355 0.24 +1.5
4,157,149 + OH686_20355 0.24 +0.9
4,157,149 + OH686_20355 0.24 -2.5
4,157,149 + OH686_20355 0.24 -0.6
4,157,149 + OH686_20355 0.24 +0.9
4,157,149 + OH686_20355 0.24 +0.8
4,157,149 + OH686_20355 0.24 +0.2
4,157,149 + OH686_20355 0.24 +1.0
4,157,150 - OH686_20355 0.24 +1.2
4,157,150 - OH686_20355 0.24 +0.0
4,157,157 + OH686_20355 0.25 -1.0
4,157,157 + OH686_20355 0.25 +1.0
4,157,157 + OH686_20355 0.25 +0.3
4,157,158 - OH686_20355 0.25 -0.4
4,157,158 - OH686_20355 0.25 +0.0
4,157,158 - OH686_20355 0.25 -0.3
4,157,523 + OH686_20355 0.64 +0.4
4,157,523 + OH686_20355 0.64 -0.1
4,157,523 + OH686_20355 0.64 +0.1
4,157,523 + OH686_20355 0.64 -0.9
4,157,524 - OH686_20355 0.64 +1.3
4,157,524 - OH686_20355 0.64 +0.8
4,157,524 - OH686_20355 0.64 +0.6
4,157,524 - OH686_20355 0.64 -0.4
4,157,524 - OH686_20355 0.64 -0.2
4,157,524 - OH686_20355 0.64 -0.3
4,157,524 - OH686_20355 0.64 +0.5
4,157,572 + OH686_20355 0.70 +2.0
4,157,572 + OH686_20355 0.70 +0.7
4,157,572 + OH686_20355 0.70 +0.8
4,157,572 + OH686_20355 0.70 +1.3
4,157,573 - OH686_20355 0.70 -0.4
4,157,573 - OH686_20355 0.70 -0.9
4,157,573 - OH686_20355 0.70 +0.1
4,157,573 - OH686_20355 0.70 +0.8
4,157,674 + OH686_20355 0.80 -0.0
4,157,674 + OH686_20355 0.80 -0.8
4,157,674 + OH686_20355 0.80 -1.0
4,157,674 + OH686_20355 0.80 -0.3
4,157,674 + OH686_20355 0.80 -0.1
4,157,675 - OH686_20355 0.81 +0.7
4,157,675 - OH686_20355 0.81 -0.7
4,157,690 + OH686_20355 0.82 +0.5
4,157,690 + OH686_20355 0.82 +0.9
4,157,691 - OH686_20355 0.82 -0.5
4,157,691 - OH686_20355 0.82 +0.2
4,157,692 + OH686_20355 0.82 +0.7
4,157,692 + OH686_20355 0.82 +0.4
4,157,692 + OH686_20355 0.82 -0.1
4,157,692 + OH686_20355 0.82 +1.5
4,157,692 + OH686_20355 0.82 -0.3
4,157,692 + OH686_20355 0.82 -0.2
4,157,692 + OH686_20355 0.82 -0.3
4,157,692 + OH686_20355 0.82 +0.2
4,157,692 + OH686_20355 0.82 +0.2
4,157,692 + OH686_20355 0.82 +0.8
4,157,692 + OH686_20355 0.82 +1.0
4,157,692 + OH686_20355 0.82 -0.0
4,157,692 + OH686_20355 0.82 +0.7
4,157,692 + OH686_20355 0.82 +0.3
4,157,692 + OH686_20355 0.82 -0.8
4,157,692 + OH686_20355 0.82 +0.7
4,157,692 + OH686_20355 0.82 +0.2
4,157,692 + OH686_20355 0.82 -0.3
4,157,692 + OH686_20355 0.82 +1.8
4,157,692 + OH686_20355 0.82 +0.5
4,157,693 - OH686_20355 0.83 -0.0
4,157,693 - OH686_20355 0.83 -0.4
4,157,693 - OH686_20355 0.83 +2.1
4,157,693 - OH686_20355 0.83 +0.8
4,157,693 - OH686_20355 0.83 +0.5
4,157,693 - OH686_20355 0.83 +1.2
4,157,693 - OH686_20355 0.83 +0.0
4,157,693 - OH686_20355 0.83 -0.4
4,157,693 - OH686_20355 0.83 -0.0
4,157,693 - OH686_20355 0.83 -1.1
4,157,693 - OH686_20355 0.83 -0.4
4,159,408 - -1.5
4,159,408 - +1.1
4,159,408 - +0.7
4,159,408 - +0.7
4,159,415 - -1.0
4,159,415 - +0.7
4,159,415 - +0.9
4,159,425 + -0.3
4,159,426 - -0.3
4,159,447 + -0.3
4,159,448 - -0.2
4,159,536 + +0.8
4,159,618 + +0.8
4,159,618 + +1.4
4,159,618 + -0.8
4,159,618 + +1.8
4,159,619 - +0.4
4,159,619 - +1.6
4,159,812 + OH686_20365 0.27 +1.3
4,159,813 - OH686_20365 0.27 +0.8
4,160,091 + OH686_20365 0.63 +1.2
4,160,091 + OH686_20365 0.63 +1.0
4,160,092 - OH686_20365 0.64 +1.3
4,160,092 - OH686_20365 0.64 +0.6
4,160,092 - OH686_20365 0.64 +0.8
4,160,167 - OH686_20365 0.73 +0.6
4,160,306 - -0.1
4,160,313 + +1.5
4,160,313 + +0.2
4,160,314 - +0.6
4,160,314 - +1.2

Or see this region's nucleotide sequence