Strain Fitness in Pseudomonas sp. S08-1 around OH686_19690

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_19685 and OH686_19690 overlap by 4 nucleotidesOH686_19690 and OH686_19695 are separated by 1 nucleotides OH686_19685: OH686_19685 - D12 class N6 adenine-specific DNA methyltransferase, at 4,030,955 to 4,032,187 _19685 OH686_19690: OH686_19690 - hypothetical protein, at 4,032,184 to 4,032,912 _19690 OH686_19695: OH686_19695 - hypothetical protein, at 4,032,914 to 4,033,888 _19695 Position (kb) 4032 4033Strain fitness (log2 ratio) -2 -1 0 1 2at 4031.855 kb on - strand, within OH686_19685at 4032.140 kb on - strandat 4032.140 kb on - strandat 4032.312 kb on + strand, within OH686_19690at 4032.312 kb on + strand, within OH686_19690at 4032.348 kb on - strand, within OH686_19690at 4032.470 kb on + strand, within OH686_19690at 4032.503 kb on + strand, within OH686_19690at 4032.603 kb on + strand, within OH686_19690at 4032.629 kb on - strand, within OH686_19690at 4032.636 kb on + strand, within OH686_19690at 4032.753 kb on - strand, within OH686_19690at 4032.775 kb on - strand, within OH686_19690at 4032.800 kb on + strand, within OH686_19690at 4032.800 kb on + strand, within OH686_19690at 4032.849 kb on + strandat 4032.948 kb on + strandat 4033.119 kb on + strand, within OH686_19695at 4033.119 kb on + strand, within OH686_19695at 4033.224 kb on + strand, within OH686_19695at 4033.224 kb on + strand, within OH686_19695at 4033.255 kb on + strand, within OH686_19695at 4033.256 kb on - strand, within OH686_19695at 4033.281 kb on + strand, within OH686_19695at 4033.281 kb on + strand, within OH686_19695at 4033.298 kb on - strand, within OH686_19695at 4033.306 kb on + strand, within OH686_19695at 4033.325 kb on - strand, within OH686_19695at 4033.572 kb on + strand, within OH686_19695at 4033.574 kb on + strand, within OH686_19695at 4033.575 kb on - strand, within OH686_19695at 4033.641 kb on + strand, within OH686_19695

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,031,855 - OH686_19685 0.73 +1.1
4,032,140 - +1.4
4,032,140 - +0.3
4,032,312 + OH686_19690 0.18 -0.1
4,032,312 + OH686_19690 0.18 +0.9
4,032,348 - OH686_19690 0.22 +0.5
4,032,470 + OH686_19690 0.39 +0.9
4,032,503 + OH686_19690 0.44 +0.5
4,032,603 + OH686_19690 0.57 +0.4
4,032,629 - OH686_19690 0.61 +0.5
4,032,636 + OH686_19690 0.62 -0.4
4,032,753 - OH686_19690 0.78 +0.6
4,032,775 - OH686_19690 0.81 +2.4
4,032,800 + OH686_19690 0.84 +0.5
4,032,800 + OH686_19690 0.84 -0.1
4,032,849 + -0.1
4,032,948 + -0.1
4,033,119 + OH686_19695 0.21 +0.6
4,033,119 + OH686_19695 0.21 -0.1
4,033,224 + OH686_19695 0.32 +0.3
4,033,224 + OH686_19695 0.32 -0.2
4,033,255 + OH686_19695 0.35 +0.1
4,033,256 - OH686_19695 0.35 -0.2
4,033,281 + OH686_19695 0.38 -0.5
4,033,281 + OH686_19695 0.38 -1.0
4,033,298 - OH686_19695 0.39 +0.8
4,033,306 + OH686_19695 0.40 +1.7
4,033,325 - OH686_19695 0.42 -0.2
4,033,572 + OH686_19695 0.67 -2.2
4,033,574 + OH686_19695 0.68 +0.7
4,033,575 - OH686_19695 0.68 -0.1
4,033,641 + OH686_19695 0.75 +0.6

Or see this region's nucleotide sequence