Strain Fitness in Pseudomonas sp. S08-1 around OH686_18670

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_18660 and OH686_18665 are separated by 9 nucleotidesOH686_18665 and OH686_18670 are separated by 91 nucleotidesOH686_18670 and OH686_18675 are separated by 91 nucleotides OH686_18660: OH686_18660 - Oxidoreductase, at 3,869,245 to 3,870,297 _18660 OH686_18665: OH686_18665 - Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase RhlG , at 3,870,307 to 3,871,077 _18665 OH686_18670: OH686_18670 - Uncharacterized protein YpeB, at 3,871,169 to 3,871,387 _18670 OH686_18675: OH686_18675 - alkyl hydroperoxide reductase subunit F, at 3,871,479 to 3,873,035 _18675 Position (kb) 3871 3872Strain fitness (log2 ratio) -2 -1 0 1 2at 3870.308 kb on + strandat 3870.353 kb on + strandat 3870.353 kb on + strandat 3870.353 kb on + strandat 3870.353 kb on + strandat 3870.353 kb on + strandat 3870.353 kb on + strandat 3870.353 kb on + strandat 3870.353 kb on + strandat 3870.353 kb on + strandat 3870.353 kb on + strandat 3870.354 kb on - strandat 3870.354 kb on - strandat 3870.354 kb on - strandat 3870.354 kb on - strandat 3870.354 kb on - strandat 3870.354 kb on - strandat 3870.354 kb on - strandat 3870.354 kb on - strandat 3870.354 kb on - strandat 3870.354 kb on - strandat 3870.427 kb on + strand, within OH686_18665at 3870.427 kb on + strand, within OH686_18665at 3870.427 kb on + strand, within OH686_18665at 3870.427 kb on + strand, within OH686_18665at 3870.427 kb on + strand, within OH686_18665at 3870.427 kb on + strand, within OH686_18665at 3870.427 kb on + strand, within OH686_18665at 3870.427 kb on + strand, within OH686_18665at 3870.427 kb on + strand, within OH686_18665at 3870.427 kb on + strand, within OH686_18665at 3870.427 kb on + strand, within OH686_18665at 3870.427 kb on + strand, within OH686_18665at 3870.428 kb on - strand, within OH686_18665at 3870.428 kb on - strand, within OH686_18665at 3870.428 kb on - strand, within OH686_18665at 3870.428 kb on - strand, within OH686_18665at 3870.428 kb on - strand, within OH686_18665at 3870.593 kb on + strand, within OH686_18665at 3870.593 kb on + strand, within OH686_18665at 3870.594 kb on - strand, within OH686_18665at 3870.594 kb on - strand, within OH686_18665at 3870.594 kb on - strand, within OH686_18665at 3870.594 kb on - strand, within OH686_18665at 3870.594 kb on - strand, within OH686_18665at 3870.594 kb on - strand, within OH686_18665at 3870.594 kb on - strand, within OH686_18665at 3870.599 kb on + strand, within OH686_18665at 3870.599 kb on + strand, within OH686_18665at 3870.599 kb on + strand, within OH686_18665at 3870.599 kb on + strand, within OH686_18665at 3870.599 kb on + strand, within OH686_18665at 3870.600 kb on - strand, within OH686_18665at 3870.767 kb on + strand, within OH686_18665at 3870.767 kb on + strand, within OH686_18665at 3870.768 kb on - strand, within OH686_18665at 3871.067 kb on + strandat 3871.067 kb on + strandat 3871.067 kb on + strandat 3871.067 kb on + strandat 3871.068 kb on - strandat 3871.068 kb on - strandat 3871.068 kb on - strandat 3871.068 kb on - strandat 3871.115 kb on + strandat 3871.115 kb on + strandat 3871.144 kb on + strandat 3871.144 kb on + strandat 3871.144 kb on + strandat 3871.144 kb on + strandat 3871.144 kb on + strandat 3871.144 kb on + strandat 3871.145 kb on - strandat 3871.145 kb on - strandat 3871.145 kb on - strandat 3871.146 kb on + strandat 3871.146 kb on + strandat 3871.146 kb on + strandat 3871.147 kb on - strandat 3871.147 kb on - strandat 3871.147 kb on - strandat 3871.296 kb on + strand, within OH686_18670at 3871.296 kb on + strand, within OH686_18670at 3871.296 kb on + strand, within OH686_18670at 3871.296 kb on + strand, within OH686_18670at 3871.296 kb on + strand, within OH686_18670at 3871.296 kb on + strand, within OH686_18670at 3871.296 kb on + strand, within OH686_18670at 3871.296 kb on + strand, within OH686_18670at 3871.296 kb on + strand, within OH686_18670at 3871.296 kb on + strand, within OH686_18670at 3871.296 kb on + strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.297 kb on - strand, within OH686_18670at 3871.332 kb on + strand, within OH686_18670at 3871.332 kb on + strand, within OH686_18670at 3871.332 kb on + strand, within OH686_18670at 3871.332 kb on + strand, within OH686_18670at 3871.333 kb on - strand, within OH686_18670at 3871.333 kb on - strand, within OH686_18670at 3871.333 kb on - strand, within OH686_18670at 3871.333 kb on - strand, within OH686_18670at 3871.333 kb on - strand, within OH686_18670at 3871.333 kb on - strand, within OH686_18670at 3871.333 kb on - strand, within OH686_18670at 3871.333 kb on - strand, within OH686_18670at 3871.398 kb on + strandat 3871.398 kb on + strandat 3871.398 kb on + strandat 3871.399 kb on - strandat 3871.558 kb on + strandat 3871.558 kb on + strandat 3871.559 kb on - strandat 3871.559 kb on - strandat 3871.559 kb on - strandat 3871.724 kb on + strand, within OH686_18675at 3871.725 kb on - strand, within OH686_18675at 3871.753 kb on + strand, within OH686_18675at 3871.753 kb on + strand, within OH686_18675at 3871.753 kb on + strand, within OH686_18675at 3871.753 kb on + strand, within OH686_18675at 3871.753 kb on + strand, within OH686_18675at 3871.754 kb on - strand, within OH686_18675at 3871.754 kb on - strand, within OH686_18675at 3871.754 kb on - strand, within OH686_18675at 3871.754 kb on - strand, within OH686_18675at 3871.754 kb on - strand, within OH686_18675at 3871.754 kb on - strand, within OH686_18675at 3871.754 kb on - strand, within OH686_18675at 3871.837 kb on + strand, within OH686_18675at 3871.837 kb on + strand, within OH686_18675at 3871.837 kb on + strand, within OH686_18675at 3871.837 kb on + strand, within OH686_18675at 3871.838 kb on - strand, within OH686_18675at 3871.838 kb on - strand, within OH686_18675at 3871.838 kb on - strand, within OH686_18675at 3871.838 kb on - strand, within OH686_18675at 3871.838 kb on - strand, within OH686_18675at 3871.838 kb on - strand, within OH686_18675at 3871.838 kb on - strand, within OH686_18675at 3871.838 kb on - strand, within OH686_18675at 3871.838 kb on - strand, within OH686_18675at 3872.029 kb on + strand, within OH686_18675at 3872.029 kb on + strand, within OH686_18675at 3872.029 kb on + strand, within OH686_18675at 3872.029 kb on + strand, within OH686_18675at 3872.029 kb on + strand, within OH686_18675at 3872.029 kb on + strand, within OH686_18675at 3872.029 kb on + strand, within OH686_18675at 3872.029 kb on + strand, within OH686_18675at 3872.029 kb on + strand, within OH686_18675at 3872.030 kb on - strand, within OH686_18675at 3872.030 kb on - strand, within OH686_18675at 3872.030 kb on - strand, within OH686_18675at 3872.030 kb on - strand, within OH686_18675at 3872.030 kb on - strand, within OH686_18675at 3872.030 kb on - strand, within OH686_18675at 3872.030 kb on - strand, within OH686_18675at 3872.030 kb on - strand, within OH686_18675at 3872.030 kb on - strand, within OH686_18675at 3872.030 kb on - strand, within OH686_18675at 3872.030 kb on - strand, within OH686_18675at 3872.200 kb on + strand, within OH686_18675at 3872.200 kb on + strand, within OH686_18675at 3872.200 kb on + strand, within OH686_18675at 3872.350 kb on + strand, within OH686_18675at 3872.350 kb on + strand, within OH686_18675at 3872.351 kb on - strand, within OH686_18675at 3872.351 kb on - strand, within OH686_18675at 3872.351 kb on - strand, within OH686_18675at 3872.351 kb on - strand, within OH686_18675at 3872.351 kb on - strand, within OH686_18675at 3872.351 kb on - strand, within OH686_18675at 3872.351 kb on - strand, within OH686_18675

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,870,308 + -0.3
3,870,353 + +0.3
3,870,353 + +0.6
3,870,353 + +0.2
3,870,353 + -1.9
3,870,353 + +0.6
3,870,353 + -0.6
3,870,353 + +0.4
3,870,353 + -0.7
3,870,353 + +0.5
3,870,353 + -0.3
3,870,354 - -0.6
3,870,354 - -0.1
3,870,354 - -1.4
3,870,354 - -2.2
3,870,354 - +1.3
3,870,354 - +0.0
3,870,354 - +0.6
3,870,354 - +0.0
3,870,354 - +0.1
3,870,354 - -0.8
3,870,427 + OH686_18665 0.16 -0.6
3,870,427 + OH686_18665 0.16 -0.5
3,870,427 + OH686_18665 0.16 +1.5
3,870,427 + OH686_18665 0.16 -0.2
3,870,427 + OH686_18665 0.16 +0.9
3,870,427 + OH686_18665 0.16 -0.3
3,870,427 + OH686_18665 0.16 -0.1
3,870,427 + OH686_18665 0.16 +0.1
3,870,427 + OH686_18665 0.16 +0.0
3,870,427 + OH686_18665 0.16 +0.4
3,870,427 + OH686_18665 0.16 +0.3
3,870,427 + OH686_18665 0.16 +0.3
3,870,428 - OH686_18665 0.16 +1.2
3,870,428 - OH686_18665 0.16 +1.7
3,870,428 - OH686_18665 0.16 -0.3
3,870,428 - OH686_18665 0.16 +0.8
3,870,428 - OH686_18665 0.16 +0.5
3,870,593 + OH686_18665 0.37 -0.3
3,870,593 + OH686_18665 0.37 +0.1
3,870,594 - OH686_18665 0.37 +0.8
3,870,594 - OH686_18665 0.37 -1.1
3,870,594 - OH686_18665 0.37 -1.3
3,870,594 - OH686_18665 0.37 +1.0
3,870,594 - OH686_18665 0.37 +1.2
3,870,594 - OH686_18665 0.37 -0.7
3,870,594 - OH686_18665 0.37 +1.3
3,870,599 + OH686_18665 0.38 -0.9
3,870,599 + OH686_18665 0.38 +0.6
3,870,599 + OH686_18665 0.38 -1.6
3,870,599 + OH686_18665 0.38 -0.5
3,870,599 + OH686_18665 0.38 +1.0
3,870,600 - OH686_18665 0.38 +0.7
3,870,767 + OH686_18665 0.60 +1.7
3,870,767 + OH686_18665 0.60 +0.2
3,870,768 - OH686_18665 0.60 -0.7
3,871,067 + -1.2
3,871,067 + +0.5
3,871,067 + +0.0
3,871,067 + +0.3
3,871,068 - -0.8
3,871,068 - -0.6
3,871,068 - -0.4
3,871,068 - -1.4
3,871,115 + +0.2
3,871,115 + +0.7
3,871,144 + +0.7
3,871,144 + -0.1
3,871,144 + +0.1
3,871,144 + -0.4
3,871,144 + -0.0
3,871,144 + +0.0
3,871,145 - -0.2
3,871,145 - +1.4
3,871,145 - -0.5
3,871,146 + +0.0
3,871,146 + +0.3
3,871,146 + -1.2
3,871,147 - -0.7
3,871,147 - -0.4
3,871,147 - +0.3
3,871,296 + OH686_18670 0.58 +0.3
3,871,296 + OH686_18670 0.58 +0.8
3,871,296 + OH686_18670 0.58 -0.6
3,871,296 + OH686_18670 0.58 -1.3
3,871,296 + OH686_18670 0.58 +0.4
3,871,296 + OH686_18670 0.58 -0.4
3,871,296 + OH686_18670 0.58 +0.0
3,871,296 + OH686_18670 0.58 +1.4
3,871,296 + OH686_18670 0.58 +0.0
3,871,296 + OH686_18670 0.58 -0.0
3,871,296 + OH686_18670 0.58 +1.3
3,871,297 - OH686_18670 0.58 +0.4
3,871,297 - OH686_18670 0.58 -0.4
3,871,297 - OH686_18670 0.58 +0.1
3,871,297 - OH686_18670 0.58 +0.6
3,871,297 - OH686_18670 0.58 +0.6
3,871,297 - OH686_18670 0.58 -0.1
3,871,297 - OH686_18670 0.58 -0.2
3,871,297 - OH686_18670 0.58 +0.3
3,871,297 - OH686_18670 0.58 -0.7
3,871,297 - OH686_18670 0.58 -0.3
3,871,297 - OH686_18670 0.58 -0.1
3,871,297 - OH686_18670 0.58 +0.3
3,871,297 - OH686_18670 0.58 +1.7
3,871,297 - OH686_18670 0.58 -0.3
3,871,332 + OH686_18670 0.74 -0.6
3,871,332 + OH686_18670 0.74 -0.2
3,871,332 + OH686_18670 0.74 -1.0
3,871,332 + OH686_18670 0.74 +0.2
3,871,333 - OH686_18670 0.75 -0.6
3,871,333 - OH686_18670 0.75 -0.4
3,871,333 - OH686_18670 0.75 -2.3
3,871,333 - OH686_18670 0.75 -0.5
3,871,333 - OH686_18670 0.75 +0.4
3,871,333 - OH686_18670 0.75 +0.4
3,871,333 - OH686_18670 0.75 -0.0
3,871,333 - OH686_18670 0.75 +0.3
3,871,398 + -0.1
3,871,398 + +0.6
3,871,398 + +0.3
3,871,399 - -1.0
3,871,558 + +0.3
3,871,558 + +1.7
3,871,559 - -0.5
3,871,559 - -0.9
3,871,559 - +0.8
3,871,724 + OH686_18675 0.16 +0.6
3,871,725 - OH686_18675 0.16 +0.2
3,871,753 + OH686_18675 0.18 +1.4
3,871,753 + OH686_18675 0.18 +0.0
3,871,753 + OH686_18675 0.18 +0.1
3,871,753 + OH686_18675 0.18 -0.5
3,871,753 + OH686_18675 0.18 +0.1
3,871,754 - OH686_18675 0.18 -0.2
3,871,754 - OH686_18675 0.18 +0.8
3,871,754 - OH686_18675 0.18 +0.4
3,871,754 - OH686_18675 0.18 +0.2
3,871,754 - OH686_18675 0.18 -1.7
3,871,754 - OH686_18675 0.18 +1.8
3,871,754 - OH686_18675 0.18 -0.5
3,871,837 + OH686_18675 0.23 +0.1
3,871,837 + OH686_18675 0.23 -1.0
3,871,837 + OH686_18675 0.23 -2.1
3,871,837 + OH686_18675 0.23 +0.3
3,871,838 - OH686_18675 0.23 -0.3
3,871,838 - OH686_18675 0.23 +0.4
3,871,838 - OH686_18675 0.23 -1.2
3,871,838 - OH686_18675 0.23 +0.3
3,871,838 - OH686_18675 0.23 -0.6
3,871,838 - OH686_18675 0.23 +1.4
3,871,838 - OH686_18675 0.23 +0.6
3,871,838 - OH686_18675 0.23 +0.3
3,871,838 - OH686_18675 0.23 -0.2
3,872,029 + OH686_18675 0.35 +0.3
3,872,029 + OH686_18675 0.35 -0.6
3,872,029 + OH686_18675 0.35 +0.5
3,872,029 + OH686_18675 0.35 +0.4
3,872,029 + OH686_18675 0.35 -0.3
3,872,029 + OH686_18675 0.35 -0.2
3,872,029 + OH686_18675 0.35 +0.2
3,872,029 + OH686_18675 0.35 -0.1
3,872,029 + OH686_18675 0.35 -0.1
3,872,030 - OH686_18675 0.35 +0.3
3,872,030 - OH686_18675 0.35 -0.3
3,872,030 - OH686_18675 0.35 -0.3
3,872,030 - OH686_18675 0.35 -1.7
3,872,030 - OH686_18675 0.35 -0.4
3,872,030 - OH686_18675 0.35 +0.3
3,872,030 - OH686_18675 0.35 -1.4
3,872,030 - OH686_18675 0.35 +0.8
3,872,030 - OH686_18675 0.35 -0.3
3,872,030 - OH686_18675 0.35 -0.3
3,872,030 - OH686_18675 0.35 +0.9
3,872,200 + OH686_18675 0.46 -0.6
3,872,200 + OH686_18675 0.46 +0.7
3,872,200 + OH686_18675 0.46 -0.2
3,872,350 + OH686_18675 0.56 -0.3
3,872,350 + OH686_18675 0.56 -0.4
3,872,351 - OH686_18675 0.56 -0.1
3,872,351 - OH686_18675 0.56 -0.6
3,872,351 - OH686_18675 0.56 +1.0
3,872,351 - OH686_18675 0.56 +1.3
3,872,351 - OH686_18675 0.56 +1.6
3,872,351 - OH686_18675 0.56 +0.0
3,872,351 - OH686_18675 0.56 -0.0

Or see this region's nucleotide sequence