Strain Fitness in Pseudomonas sp. S08-1 around OH686_17820

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17815 and OH686_17820 are separated by 12 nucleotidesOH686_17820 and OH686_17825 are separated by 52 nucleotides OH686_17815: OH686_17815 - Amino acid ABC transporter, permease protein 2, YhdY, at 3,714,304 to 3,715,401 _17815 OH686_17820: OH686_17820 - Amino acid ABC transporter, ATP-binding protein YhdZ, at 3,715,414 to 3,716,175 _17820 OH686_17825: OH686_17825 - Transcriptional regulator, AraC family, at 3,716,228 to 3,717,187 _17825 Position (kb) 3715 3716 3717Strain fitness (log2 ratio) -2 -1 0 1at 3714.427 kb on + strand, within OH686_17815at 3714.427 kb on + strand, within OH686_17815at 3714.427 kb on + strand, within OH686_17815at 3714.427 kb on + strand, within OH686_17815at 3714.427 kb on + strand, within OH686_17815at 3714.427 kb on + strand, within OH686_17815at 3714.427 kb on + strand, within OH686_17815at 3714.427 kb on + strand, within OH686_17815at 3714.427 kb on + strand, within OH686_17815at 3714.427 kb on + strand, within OH686_17815at 3714.428 kb on - strand, within OH686_17815at 3714.428 kb on - strand, within OH686_17815at 3714.428 kb on - strand, within OH686_17815at 3714.428 kb on - strand, within OH686_17815at 3714.428 kb on - strand, within OH686_17815at 3714.428 kb on - strand, within OH686_17815at 3714.428 kb on - strand, within OH686_17815at 3714.565 kb on + strand, within OH686_17815at 3714.565 kb on + strand, within OH686_17815at 3714.565 kb on + strand, within OH686_17815at 3714.565 kb on + strand, within OH686_17815at 3714.565 kb on + strand, within OH686_17815at 3714.565 kb on + strand, within OH686_17815at 3714.565 kb on + strand, within OH686_17815at 3714.566 kb on - strand, within OH686_17815at 3714.566 kb on - strand, within OH686_17815at 3714.566 kb on - strand, within OH686_17815at 3714.566 kb on - strand, within OH686_17815at 3714.575 kb on - strand, within OH686_17815at 3714.575 kb on - strand, within OH686_17815at 3714.575 kb on - strand, within OH686_17815at 3714.697 kb on + strand, within OH686_17815at 3714.697 kb on + strand, within OH686_17815at 3714.697 kb on + strand, within OH686_17815at 3714.698 kb on - strand, within OH686_17815at 3715.033 kb on + strand, within OH686_17815at 3715.033 kb on + strand, within OH686_17815at 3715.033 kb on + strand, within OH686_17815at 3715.033 kb on + strand, within OH686_17815at 3715.034 kb on - strand, within OH686_17815at 3715.034 kb on - strand, within OH686_17815at 3715.034 kb on - strand, within OH686_17815at 3715.034 kb on - strand, within OH686_17815at 3715.034 kb on - strand, within OH686_17815at 3715.084 kb on + strand, within OH686_17815at 3715.084 kb on + strand, within OH686_17815at 3715.303 kb on + strandat 3715.303 kb on + strandat 3715.303 kb on + strandat 3715.303 kb on + strandat 3715.303 kb on + strandat 3715.303 kb on + strandat 3715.303 kb on + strandat 3715.303 kb on + strandat 3715.303 kb on + strandat 3715.304 kb on - strandat 3715.304 kb on - strandat 3715.304 kb on - strandat 3715.304 kb on - strandat 3715.304 kb on - strandat 3715.304 kb on - strandat 3715.304 kb on - strandat 3715.304 kb on - strandat 3715.354 kb on + strandat 3715.354 kb on + strandat 3715.393 kb on - strandat 3715.399 kb on + strandat 3715.399 kb on + strandat 3715.399 kb on + strandat 3715.408 kb on + strandat 3715.408 kb on + strandat 3715.408 kb on + strandat 3715.408 kb on + strandat 3715.408 kb on + strandat 3715.408 kb on + strandat 3715.408 kb on + strandat 3715.408 kb on + strandat 3715.408 kb on + strandat 3715.408 kb on + strandat 3715.408 kb on + strandat 3715.409 kb on - strandat 3715.409 kb on - strandat 3715.409 kb on - strandat 3715.409 kb on - strandat 3715.409 kb on - strandat 3715.409 kb on - strandat 3715.409 kb on - strandat 3715.409 kb on - strandat 3715.425 kb on + strandat 3715.425 kb on + strandat 3715.425 kb on + strandat 3715.426 kb on - strandat 3715.426 kb on - strandat 3715.426 kb on - strandat 3715.847 kb on - strand, within OH686_17820at 3715.981 kb on - strand, within OH686_17820at 3716.285 kb on + strandat 3716.285 kb on + strandat 3716.285 kb on + strandat 3716.285 kb on + strandat 3716.285 kb on + strandat 3716.285 kb on + strandat 3716.285 kb on + strandat 3716.285 kb on + strandat 3716.285 kb on + strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.286 kb on - strandat 3716.325 kb on + strand, within OH686_17825at 3716.325 kb on + strand, within OH686_17825at 3716.412 kb on + strand, within OH686_17825at 3716.413 kb on - strand, within OH686_17825at 3716.540 kb on + strand, within OH686_17825at 3716.540 kb on + strand, within OH686_17825at 3716.540 kb on + strand, within OH686_17825at 3716.540 kb on + strand, within OH686_17825at 3716.540 kb on + strand, within OH686_17825at 3716.541 kb on - strand, within OH686_17825at 3716.768 kb on + strand, within OH686_17825at 3716.768 kb on + strand, within OH686_17825at 3716.768 kb on + strand, within OH686_17825at 3716.768 kb on + strand, within OH686_17825at 3716.769 kb on - strand, within OH686_17825at 3716.769 kb on - strand, within OH686_17825at 3716.769 kb on - strand, within OH686_17825at 3716.769 kb on - strand, within OH686_17825at 3717.033 kb on + strand, within OH686_17825at 3717.033 kb on + strand, within OH686_17825at 3717.034 kb on - strand, within OH686_17825at 3717.137 kb on + strandat 3717.137 kb on + strandat 3717.137 kb on + strandat 3717.137 kb on + strandat 3717.137 kb on + strandat 3717.137 kb on + strandat 3717.137 kb on + strandat 3717.137 kb on + strandat 3717.138 kb on - strandat 3717.138 kb on - strandat 3717.138 kb on - strandat 3717.138 kb on - strandat 3717.138 kb on - strandat 3717.138 kb on - strandat 3717.138 kb on - strandat 3717.168 kb on + strandat 3717.168 kb on + strandat 3717.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,714,427 + OH686_17815 0.11 +0.4
3,714,427 + OH686_17815 0.11 -1.2
3,714,427 + OH686_17815 0.11 +0.0
3,714,427 + OH686_17815 0.11 +0.2
3,714,427 + OH686_17815 0.11 -0.3
3,714,427 + OH686_17815 0.11 -0.5
3,714,427 + OH686_17815 0.11 -0.2
3,714,427 + OH686_17815 0.11 -0.2
3,714,427 + OH686_17815 0.11 -0.3
3,714,427 + OH686_17815 0.11 -0.7
3,714,428 - OH686_17815 0.11 +0.6
3,714,428 - OH686_17815 0.11 -0.6
3,714,428 - OH686_17815 0.11 +0.0
3,714,428 - OH686_17815 0.11 -1.1
3,714,428 - OH686_17815 0.11 -0.1
3,714,428 - OH686_17815 0.11 +0.9
3,714,428 - OH686_17815 0.11 +1.3
3,714,565 + OH686_17815 0.24 -0.3
3,714,565 + OH686_17815 0.24 +0.3
3,714,565 + OH686_17815 0.24 -0.9
3,714,565 + OH686_17815 0.24 -0.9
3,714,565 + OH686_17815 0.24 -0.7
3,714,565 + OH686_17815 0.24 +0.5
3,714,565 + OH686_17815 0.24 +0.5
3,714,566 - OH686_17815 0.24 -1.1
3,714,566 - OH686_17815 0.24 -0.9
3,714,566 - OH686_17815 0.24 +0.1
3,714,566 - OH686_17815 0.24 +0.8
3,714,575 - OH686_17815 0.25 +1.0
3,714,575 - OH686_17815 0.25 -0.7
3,714,575 - OH686_17815 0.25 -0.2
3,714,697 + OH686_17815 0.36 -0.6
3,714,697 + OH686_17815 0.36 -1.4
3,714,697 + OH686_17815 0.36 -0.3
3,714,698 - OH686_17815 0.36 -0.9
3,715,033 + OH686_17815 0.66 +0.5
3,715,033 + OH686_17815 0.66 -0.2
3,715,033 + OH686_17815 0.66 +1.2
3,715,033 + OH686_17815 0.66 +0.4
3,715,034 - OH686_17815 0.66 +0.2
3,715,034 - OH686_17815 0.66 -0.1
3,715,034 - OH686_17815 0.66 -0.2
3,715,034 - OH686_17815 0.66 -0.3
3,715,034 - OH686_17815 0.66 -0.5
3,715,084 + OH686_17815 0.71 +0.9
3,715,084 + OH686_17815 0.71 -0.3
3,715,303 + +0.1
3,715,303 + +0.9
3,715,303 + +0.8
3,715,303 + -0.3
3,715,303 + -0.9
3,715,303 + -0.4
3,715,303 + -0.5
3,715,303 + -0.6
3,715,303 + +0.8
3,715,304 - +0.3
3,715,304 - +1.0
3,715,304 - +0.5
3,715,304 - -0.8
3,715,304 - +0.0
3,715,304 - +0.2
3,715,304 - +0.0
3,715,304 - -0.8
3,715,354 + +0.0
3,715,354 + -1.0
3,715,393 - +0.0
3,715,399 + -0.4
3,715,399 + +0.5
3,715,399 + -0.5
3,715,408 + -0.4
3,715,408 + -0.4
3,715,408 + +0.6
3,715,408 + -0.1
3,715,408 + +0.2
3,715,408 + +0.0
3,715,408 + +0.6
3,715,408 + +0.0
3,715,408 + +0.6
3,715,408 + -0.3
3,715,408 + +0.2
3,715,409 - +0.4
3,715,409 - -0.6
3,715,409 - -0.3
3,715,409 - -2.7
3,715,409 - +0.7
3,715,409 - -1.5
3,715,409 - +0.0
3,715,409 - -0.6
3,715,425 + +0.0
3,715,425 + -0.7
3,715,425 + +0.1
3,715,426 - -1.4
3,715,426 - +0.6
3,715,426 - +0.8
3,715,847 - OH686_17820 0.57 +0.1
3,715,981 - OH686_17820 0.74 +1.6
3,716,285 + +1.4
3,716,285 + +0.3
3,716,285 + -0.8
3,716,285 + -0.4
3,716,285 + -0.3
3,716,285 + +1.1
3,716,285 + +0.0
3,716,285 + +0.7
3,716,285 + -0.9
3,716,286 - +0.1
3,716,286 - +0.0
3,716,286 - -0.7
3,716,286 - +0.4
3,716,286 - +0.6
3,716,286 - +1.1
3,716,286 - +0.5
3,716,286 - -1.0
3,716,286 - +0.5
3,716,286 - -0.4
3,716,286 - -0.5
3,716,286 - +0.5
3,716,286 - +1.6
3,716,325 + OH686_17825 0.10 -0.3
3,716,325 + OH686_17825 0.10 +0.8
3,716,412 + OH686_17825 0.19 +0.6
3,716,413 - OH686_17825 0.19 -0.9
3,716,540 + OH686_17825 0.33 +0.2
3,716,540 + OH686_17825 0.33 +0.0
3,716,540 + OH686_17825 0.33 +0.7
3,716,540 + OH686_17825 0.33 -0.5
3,716,540 + OH686_17825 0.33 -0.3
3,716,541 - OH686_17825 0.33 -0.7
3,716,768 + OH686_17825 0.56 +0.0
3,716,768 + OH686_17825 0.56 +1.5
3,716,768 + OH686_17825 0.56 -0.4
3,716,768 + OH686_17825 0.56 -0.1
3,716,769 - OH686_17825 0.56 +0.1
3,716,769 - OH686_17825 0.56 -0.1
3,716,769 - OH686_17825 0.56 +0.3
3,716,769 - OH686_17825 0.56 -0.7
3,717,033 + OH686_17825 0.84 +0.0
3,717,033 + OH686_17825 0.84 +0.4
3,717,034 - OH686_17825 0.84 +0.0
3,717,137 + +0.0
3,717,137 + -0.2
3,717,137 + +0.0
3,717,137 + -0.7
3,717,137 + +0.8
3,717,137 + -1.2
3,717,137 + +0.8
3,717,137 + +1.7
3,717,138 - -1.0
3,717,138 - +0.2
3,717,138 - -0.7
3,717,138 - -0.6
3,717,138 - -0.6
3,717,138 - -0.2
3,717,138 - +0.1
3,717,168 + +0.8
3,717,168 + +0.1
3,717,169 - -0.1

Or see this region's nucleotide sequence