Strain Fitness in Pseudomonas sp. S08-1 around OH686_16030

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_16020 and OH686_16025 overlap by 4 nucleotidesOH686_16025 and OH686_16030 are separated by 68 nucleotidesOH686_16030 and OH686_16035 are separated by 127 nucleotidesOH686_16035 and OH686_16040 overlap by 15 nucleotides OH686_16020: OH686_16020 - hypothetical protein, at 3,349,962 to 3,350,975 _16020 OH686_16025: OH686_16025 - YpfJ protein, zinc metalloprotease superfamily, at 3,350,972 to 3,351,838 _16025 OH686_16030: OH686_16030 - CopG protein, at 3,351,907 to 3,352,338 _16030 OH686_16035: OH686_16035 - hypothetical protein, at 3,352,466 to 3,352,855 _16035 OH686_16040: OH686_16040 - Transcriptional regulator, AcrR family, at 3,352,841 to 3,353,476 _16040 Position (kb) 3351 3352 3353Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.910 kb on + strandat 3350.911 kb on - strandat 3350.911 kb on - strandat 3350.911 kb on - strandat 3350.911 kb on - strandat 3350.911 kb on - strandat 3350.911 kb on - strandat 3350.911 kb on - strandat 3350.911 kb on - strandat 3350.911 kb on - strandat 3350.911 kb on - strandat 3350.911 kb on - strandat 3350.911 kb on - strandat 3350.952 kb on + strandat 3350.952 kb on + strandat 3350.952 kb on + strandat 3350.952 kb on + strandat 3350.953 kb on - strandat 3350.974 kb on - strandat 3350.974 kb on - strandat 3350.974 kb on - strandat 3350.974 kb on - strandat 3350.996 kb on - strandat 3351.357 kb on + strand, within OH686_16025at 3351.357 kb on + strand, within OH686_16025at 3351.357 kb on + strand, within OH686_16025at 3351.357 kb on + strand, within OH686_16025at 3351.357 kb on + strand, within OH686_16025at 3351.357 kb on + strand, within OH686_16025at 3351.357 kb on + strand, within OH686_16025at 3351.358 kb on - strand, within OH686_16025at 3351.358 kb on - strand, within OH686_16025at 3351.358 kb on - strand, within OH686_16025at 3351.358 kb on - strand, within OH686_16025at 3351.358 kb on - strand, within OH686_16025at 3351.358 kb on - strand, within OH686_16025at 3351.358 kb on - strand, within OH686_16025at 3351.358 kb on - strand, within OH686_16025at 3351.358 kb on - strand, within OH686_16025at 3351.426 kb on + strand, within OH686_16025at 3351.426 kb on + strand, within OH686_16025at 3351.426 kb on + strand, within OH686_16025at 3351.426 kb on + strand, within OH686_16025at 3351.426 kb on + strand, within OH686_16025at 3351.427 kb on - strand, within OH686_16025at 3351.427 kb on - strand, within OH686_16025at 3351.427 kb on - strand, within OH686_16025at 3351.427 kb on - strand, within OH686_16025at 3351.450 kb on + strand, within OH686_16025at 3351.450 kb on + strand, within OH686_16025at 3351.450 kb on + strand, within OH686_16025at 3351.450 kb on + strand, within OH686_16025at 3351.450 kb on + strand, within OH686_16025at 3351.450 kb on + strand, within OH686_16025at 3351.450 kb on + strand, within OH686_16025at 3351.450 kb on + strand, within OH686_16025at 3351.451 kb on - strand, within OH686_16025at 3351.451 kb on - strand, within OH686_16025at 3351.451 kb on - strand, within OH686_16025at 3351.451 kb on - strand, within OH686_16025at 3351.451 kb on - strand, within OH686_16025at 3351.451 kb on - strand, within OH686_16025at 3351.515 kb on + strand, within OH686_16025at 3351.515 kb on + strand, within OH686_16025at 3351.515 kb on + strand, within OH686_16025at 3351.515 kb on + strand, within OH686_16025at 3351.515 kb on + strand, within OH686_16025at 3351.515 kb on + strand, within OH686_16025at 3351.515 kb on + strand, within OH686_16025at 3351.516 kb on - strand, within OH686_16025at 3351.516 kb on - strand, within OH686_16025at 3351.516 kb on - strand, within OH686_16025at 3351.516 kb on - strand, within OH686_16025at 3351.516 kb on - strand, within OH686_16025at 3351.516 kb on - strand, within OH686_16025at 3351.516 kb on - strand, within OH686_16025at 3351.516 kb on - strand, within OH686_16025at 3351.516 kb on - strand, within OH686_16025at 3351.531 kb on + strand, within OH686_16025at 3351.532 kb on - strand, within OH686_16025at 3351.532 kb on - strand, within OH686_16025at 3351.532 kb on - strand, within OH686_16025at 3351.820 kb on + strandat 3351.821 kb on - strandat 3351.821 kb on - strandat 3351.869 kb on + strandat 3351.869 kb on + strandat 3351.869 kb on + strandat 3351.870 kb on - strandat 3351.870 kb on - strandat 3351.870 kb on - strandat 3351.971 kb on + strand, within OH686_16030at 3351.971 kb on + strand, within OH686_16030at 3351.971 kb on + strand, within OH686_16030at 3351.972 kb on - strand, within OH686_16030at 3352.376 kb on - strandat 3352.433 kb on + strandat 3352.433 kb on + strandat 3352.433 kb on + strandat 3352.434 kb on - strandat 3352.434 kb on - strandat 3352.434 kb on - strandat 3352.434 kb on - strandat 3352.434 kb on - strandat 3352.434 kb on - strandat 3352.507 kb on - strand, within OH686_16035at 3352.529 kb on + strand, within OH686_16035at 3352.529 kb on + strand, within OH686_16035at 3352.530 kb on - strand, within OH686_16035at 3352.530 kb on - strand, within OH686_16035at 3352.530 kb on - strand, within OH686_16035at 3352.530 kb on - strand, within OH686_16035at 3352.530 kb on - strand, within OH686_16035at 3352.610 kb on + strand, within OH686_16035at 3352.610 kb on + strand, within OH686_16035at 3352.610 kb on + strand, within OH686_16035at 3352.610 kb on + strand, within OH686_16035at 3352.610 kb on + strand, within OH686_16035at 3352.611 kb on - strand, within OH686_16035at 3352.611 kb on - strand, within OH686_16035at 3352.611 kb on - strand, within OH686_16035at 3352.611 kb on - strand, within OH686_16035at 3352.611 kb on - strand, within OH686_16035at 3352.613 kb on + strand, within OH686_16035at 3352.613 kb on + strand, within OH686_16035at 3352.613 kb on + strand, within OH686_16035at 3352.613 kb on + strand, within OH686_16035at 3352.613 kb on + strand, within OH686_16035at 3352.614 kb on - strand, within OH686_16035at 3352.614 kb on - strand, within OH686_16035at 3352.614 kb on - strand, within OH686_16035at 3352.614 kb on - strand, within OH686_16035at 3352.709 kb on + strand, within OH686_16035at 3352.709 kb on + strand, within OH686_16035at 3352.709 kb on + strand, within OH686_16035at 3352.710 kb on - strand, within OH686_16035at 3352.710 kb on - strand, within OH686_16035at 3352.782 kb on - strand, within OH686_16035at 3352.853 kb on + strandat 3352.854 kb on - strandat 3352.883 kb on + strandat 3352.884 kb on - strandat 3352.884 kb on - strandat 3352.884 kb on - strandat 3352.966 kb on + strand, within OH686_16040at 3352.966 kb on + strand, within OH686_16040at 3352.966 kb on + strand, within OH686_16040at 3352.966 kb on + strand, within OH686_16040at 3352.966 kb on + strand, within OH686_16040at 3352.966 kb on + strand, within OH686_16040at 3352.966 kb on + strand, within OH686_16040at 3352.967 kb on - strand, within OH686_16040at 3352.967 kb on - strand, within OH686_16040at 3352.968 kb on + strand, within OH686_16040at 3352.968 kb on + strand, within OH686_16040at 3352.968 kb on + strand, within OH686_16040at 3352.968 kb on + strand, within OH686_16040at 3352.968 kb on + strand, within OH686_16040at 3352.968 kb on + strand, within OH686_16040at 3352.968 kb on + strand, within OH686_16040at 3352.968 kb on + strand, within OH686_16040at 3352.968 kb on + strand, within OH686_16040at 3352.968 kb on + strand, within OH686_16040at 3352.969 kb on - strand, within OH686_16040at 3352.969 kb on - strand, within OH686_16040at 3352.969 kb on - strand, within OH686_16040at 3352.969 kb on - strand, within OH686_16040at 3352.969 kb on - strand, within OH686_16040at 3352.969 kb on - strand, within OH686_16040at 3352.969 kb on - strand, within OH686_16040at 3353.121 kb on + strand, within OH686_16040at 3353.121 kb on + strand, within OH686_16040at 3353.122 kb on - strand, within OH686_16040at 3353.122 kb on - strand, within OH686_16040at 3353.122 kb on - strand, within OH686_16040at 3353.122 kb on - strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.331 kb on + strand, within OH686_16040at 3353.332 kb on - strand, within OH686_16040at 3353.332 kb on - strand, within OH686_16040at 3353.332 kb on - strand, within OH686_16040at 3353.332 kb on - strand, within OH686_16040at 3353.332 kb on - strand, within OH686_16040at 3353.332 kb on - strand, within OH686_16040at 3353.332 kb on - strand, within OH686_16040at 3353.332 kb on - strand, within OH686_16040at 3353.332 kb on - strand, within OH686_16040at 3353.332 kb on - strand, within OH686_16040at 3353.332 kb on - strand, within OH686_16040

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,350,910 + -0.5
3,350,910 + +0.1
3,350,910 + +1.0
3,350,910 + -0.7
3,350,910 + -0.4
3,350,910 + -0.4
3,350,910 + -0.6
3,350,910 + +0.1
3,350,910 + -0.9
3,350,910 + +0.6
3,350,910 + -0.5
3,350,910 + -0.9
3,350,910 + -0.4
3,350,910 + -1.3
3,350,911 - -1.9
3,350,911 - -0.2
3,350,911 - -0.9
3,350,911 - +0.3
3,350,911 - -0.5
3,350,911 - -0.9
3,350,911 - +2.9
3,350,911 - +0.3
3,350,911 - -0.4
3,350,911 - +0.7
3,350,911 - +0.4
3,350,911 - -0.4
3,350,952 + -0.7
3,350,952 + +0.6
3,350,952 + -0.8
3,350,952 + +0.4
3,350,953 - +0.1
3,350,974 - -0.2
3,350,974 - -0.1
3,350,974 - -0.0
3,350,974 - +0.5
3,350,996 - +0.7
3,351,357 + OH686_16025 0.44 +0.8
3,351,357 + OH686_16025 0.44 -0.1
3,351,357 + OH686_16025 0.44 -0.1
3,351,357 + OH686_16025 0.44 -0.0
3,351,357 + OH686_16025 0.44 -1.9
3,351,357 + OH686_16025 0.44 -0.1
3,351,357 + OH686_16025 0.44 +0.1
3,351,358 - OH686_16025 0.45 -1.1
3,351,358 - OH686_16025 0.45 +0.5
3,351,358 - OH686_16025 0.45 -0.0
3,351,358 - OH686_16025 0.45 -0.1
3,351,358 - OH686_16025 0.45 +0.1
3,351,358 - OH686_16025 0.45 +0.6
3,351,358 - OH686_16025 0.45 +0.8
3,351,358 - OH686_16025 0.45 +0.6
3,351,358 - OH686_16025 0.45 +0.2
3,351,426 + OH686_16025 0.52 -0.1
3,351,426 + OH686_16025 0.52 -0.2
3,351,426 + OH686_16025 0.52 -1.0
3,351,426 + OH686_16025 0.52 -0.4
3,351,426 + OH686_16025 0.52 +0.1
3,351,427 - OH686_16025 0.52 -0.7
3,351,427 - OH686_16025 0.52 +0.4
3,351,427 - OH686_16025 0.52 +0.0
3,351,427 - OH686_16025 0.52 +0.9
3,351,450 + OH686_16025 0.55 -0.2
3,351,450 + OH686_16025 0.55 -0.6
3,351,450 + OH686_16025 0.55 -0.3
3,351,450 + OH686_16025 0.55 +0.0
3,351,450 + OH686_16025 0.55 +1.8
3,351,450 + OH686_16025 0.55 +0.4
3,351,450 + OH686_16025 0.55 +0.3
3,351,450 + OH686_16025 0.55 +0.4
3,351,451 - OH686_16025 0.55 -2.6
3,351,451 - OH686_16025 0.55 -0.1
3,351,451 - OH686_16025 0.55 +0.8
3,351,451 - OH686_16025 0.55 -0.8
3,351,451 - OH686_16025 0.55 +0.3
3,351,451 - OH686_16025 0.55 -0.5
3,351,515 + OH686_16025 0.63 +0.3
3,351,515 + OH686_16025 0.63 +0.3
3,351,515 + OH686_16025 0.63 +0.6
3,351,515 + OH686_16025 0.63 -0.2
3,351,515 + OH686_16025 0.63 +0.8
3,351,515 + OH686_16025 0.63 +0.3
3,351,515 + OH686_16025 0.63 +0.7
3,351,516 - OH686_16025 0.63 -0.6
3,351,516 - OH686_16025 0.63 -0.4
3,351,516 - OH686_16025 0.63 +0.9
3,351,516 - OH686_16025 0.63 -0.9
3,351,516 - OH686_16025 0.63 -0.4
3,351,516 - OH686_16025 0.63 +2.0
3,351,516 - OH686_16025 0.63 +0.7
3,351,516 - OH686_16025 0.63 +0.3
3,351,516 - OH686_16025 0.63 +0.0
3,351,531 + OH686_16025 0.64 -0.3
3,351,532 - OH686_16025 0.65 +0.2
3,351,532 - OH686_16025 0.65 +0.0
3,351,532 - OH686_16025 0.65 +0.6
3,351,820 + -0.6
3,351,821 - +1.3
3,351,821 - -0.2
3,351,869 + -0.2
3,351,869 + -0.0
3,351,869 + +0.1
3,351,870 - +0.1
3,351,870 - +0.3
3,351,870 - -1.3
3,351,971 + OH686_16030 0.15 +1.3
3,351,971 + OH686_16030 0.15 +0.8
3,351,971 + OH686_16030 0.15 -0.6
3,351,972 - OH686_16030 0.15 -0.5
3,352,376 - +0.9
3,352,433 + -0.9
3,352,433 + +0.3
3,352,433 + +1.7
3,352,434 - -0.1
3,352,434 - +0.7
3,352,434 - +0.6
3,352,434 - -0.5
3,352,434 - -0.8
3,352,434 - +0.3
3,352,507 - OH686_16035 0.11 +0.1
3,352,529 + OH686_16035 0.16 -0.1
3,352,529 + OH686_16035 0.16 +0.5
3,352,530 - OH686_16035 0.16 +0.1
3,352,530 - OH686_16035 0.16 +0.5
3,352,530 - OH686_16035 0.16 -1.4
3,352,530 - OH686_16035 0.16 -0.8
3,352,530 - OH686_16035 0.16 -0.4
3,352,610 + OH686_16035 0.37 -1.2
3,352,610 + OH686_16035 0.37 -0.4
3,352,610 + OH686_16035 0.37 +0.7
3,352,610 + OH686_16035 0.37 +0.3
3,352,610 + OH686_16035 0.37 +0.7
3,352,611 - OH686_16035 0.37 -0.9
3,352,611 - OH686_16035 0.37 +0.2
3,352,611 - OH686_16035 0.37 -0.6
3,352,611 - OH686_16035 0.37 +0.0
3,352,611 - OH686_16035 0.37 -0.9
3,352,613 + OH686_16035 0.38 +0.1
3,352,613 + OH686_16035 0.38 -0.3
3,352,613 + OH686_16035 0.38 -1.7
3,352,613 + OH686_16035 0.38 +1.3
3,352,613 + OH686_16035 0.38 -0.9
3,352,614 - OH686_16035 0.38 -0.1
3,352,614 - OH686_16035 0.38 +0.1
3,352,614 - OH686_16035 0.38 -0.3
3,352,614 - OH686_16035 0.38 +0.6
3,352,709 + OH686_16035 0.62 -0.3
3,352,709 + OH686_16035 0.62 +0.5
3,352,709 + OH686_16035 0.62 -1.4
3,352,710 - OH686_16035 0.63 -0.4
3,352,710 - OH686_16035 0.63 -1.2
3,352,782 - OH686_16035 0.81 -0.7
3,352,853 + +1.2
3,352,854 - -0.3
3,352,883 + -0.9
3,352,884 - +0.9
3,352,884 - +0.1
3,352,884 - -0.2
3,352,966 + OH686_16040 0.20 +0.1
3,352,966 + OH686_16040 0.20 -1.7
3,352,966 + OH686_16040 0.20 -2.5
3,352,966 + OH686_16040 0.20 +0.2
3,352,966 + OH686_16040 0.20 +1.3
3,352,966 + OH686_16040 0.20 -0.8
3,352,966 + OH686_16040 0.20 -0.3
3,352,967 - OH686_16040 0.20 +0.2
3,352,967 - OH686_16040 0.20 -0.3
3,352,968 + OH686_16040 0.20 -0.1
3,352,968 + OH686_16040 0.20 -1.8
3,352,968 + OH686_16040 0.20 +0.4
3,352,968 + OH686_16040 0.20 -1.5
3,352,968 + OH686_16040 0.20 -1.4
3,352,968 + OH686_16040 0.20 +0.6
3,352,968 + OH686_16040 0.20 +0.9
3,352,968 + OH686_16040 0.20 -0.6
3,352,968 + OH686_16040 0.20 +0.6
3,352,968 + OH686_16040 0.20 +0.4
3,352,969 - OH686_16040 0.20 +0.4
3,352,969 - OH686_16040 0.20 +0.4
3,352,969 - OH686_16040 0.20 -0.5
3,352,969 - OH686_16040 0.20 -0.3
3,352,969 - OH686_16040 0.20 -0.1
3,352,969 - OH686_16040 0.20 +0.3
3,352,969 - OH686_16040 0.20 +0.1
3,353,121 + OH686_16040 0.44 -0.9
3,353,121 + OH686_16040 0.44 -1.4
3,353,122 - OH686_16040 0.44 +1.0
3,353,122 - OH686_16040 0.44 +0.4
3,353,122 - OH686_16040 0.44 +0.1
3,353,122 - OH686_16040 0.44 +0.3
3,353,331 + OH686_16040 0.77 -0.3
3,353,331 + OH686_16040 0.77 -1.6
3,353,331 + OH686_16040 0.77 -2.0
3,353,331 + OH686_16040 0.77 -1.6
3,353,331 + OH686_16040 0.77 -0.3
3,353,331 + OH686_16040 0.77 +1.0
3,353,331 + OH686_16040 0.77 -0.2
3,353,331 + OH686_16040 0.77 -0.1
3,353,331 + OH686_16040 0.77 -0.5
3,353,331 + OH686_16040 0.77 -0.8
3,353,331 + OH686_16040 0.77 +0.0
3,353,331 + OH686_16040 0.77 -1.8
3,353,332 - OH686_16040 0.77 -0.1
3,353,332 - OH686_16040 0.77 +0.2
3,353,332 - OH686_16040 0.77 +0.2
3,353,332 - OH686_16040 0.77 +0.3
3,353,332 - OH686_16040 0.77 -0.1
3,353,332 - OH686_16040 0.77 +0.7
3,353,332 - OH686_16040 0.77 -0.2
3,353,332 - OH686_16040 0.77 -0.0
3,353,332 - OH686_16040 0.77 -1.2
3,353,332 - OH686_16040 0.77 -0.6
3,353,332 - OH686_16040 0.77 -0.3

Or see this region's nucleotide sequence