Strain Fitness in Pseudomonas sp. S08-1 around OH686_15735

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_15725 and OH686_15730 are separated by 14 nucleotidesOH686_15730 and OH686_15735 overlap by 14 nucleotidesOH686_15735 and OH686_15740 are separated by 122 nucleotidesOH686_15740 and OH686_15745 overlap by 4 nucleotides OH686_15725: OH686_15725 - Phosphatidylglycerophosphatase A , at 3,278,302 to 3,278,787 _15725 OH686_15730: OH686_15730 - hypothetical protein, at 3,278,802 to 3,279,557 _15730 OH686_15735: OH686_15735 - Aspartyl protease, at 3,279,544 to 3,280,197 _15735 OH686_15740: OH686_15740 - GTP cyclohydrolase II , at 3,280,320 to 3,280,931 _15740 OH686_15745: OH686_15745 - Uncharacterized MFS-type transporter, at 3,280,928 to 3,281,347 _15745 Position (kb) 3279 3280 3281Strain fitness (log2 ratio) -2 -1 0 1 2at 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.799 kb on + strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.800 kb on - strandat 3278.801 kb on - strandat 3278.846 kb on + strandat 3278.913 kb on - strand, within OH686_15730at 3279.003 kb on + strand, within OH686_15730at 3279.004 kb on - strand, within OH686_15730at 3279.004 kb on - strand, within OH686_15730at 3279.090 kb on + strand, within OH686_15730at 3279.090 kb on + strand, within OH686_15730at 3279.091 kb on - strand, within OH686_15730at 3279.091 kb on - strand, within OH686_15730at 3279.091 kb on - strand, within OH686_15730at 3279.091 kb on - strand, within OH686_15730at 3279.105 kb on + strand, within OH686_15730at 3279.106 kb on - strand, within OH686_15730at 3279.106 kb on - strand, within OH686_15730at 3279.121 kb on + strand, within OH686_15730at 3279.121 kb on + strand, within OH686_15730at 3279.122 kb on - strand, within OH686_15730at 3279.122 kb on - strand, within OH686_15730at 3279.122 kb on - strand, within OH686_15730at 3279.122 kb on - strand, within OH686_15730at 3279.122 kb on - strand, within OH686_15730at 3279.207 kb on + strand, within OH686_15730at 3279.207 kb on + strand, within OH686_15730at 3279.208 kb on - strand, within OH686_15730at 3279.216 kb on + strand, within OH686_15730at 3279.216 kb on + strand, within OH686_15730at 3279.217 kb on - strand, within OH686_15730at 3279.217 kb on - strand, within OH686_15730at 3279.217 kb on - strand, within OH686_15730at 3279.230 kb on + strand, within OH686_15730at 3279.231 kb on - strand, within OH686_15730at 3279.231 kb on - strand, within OH686_15730at 3279.238 kb on - strand, within OH686_15730at 3279.393 kb on + strand, within OH686_15730at 3279.393 kb on + strand, within OH686_15730at 3279.393 kb on + strand, within OH686_15730at 3279.393 kb on + strand, within OH686_15730at 3279.394 kb on - strand, within OH686_15730at 3279.394 kb on - strand, within OH686_15730at 3279.394 kb on - strand, within OH686_15730at 3279.513 kb on + strandat 3279.513 kb on + strandat 3279.772 kb on + strand, within OH686_15735at 3279.772 kb on + strand, within OH686_15735at 3279.773 kb on - strand, within OH686_15735at 3279.773 kb on - strand, within OH686_15735at 3279.790 kb on + strand, within OH686_15735at 3279.790 kb on + strand, within OH686_15735at 3279.790 kb on + strand, within OH686_15735at 3279.791 kb on - strand, within OH686_15735at 3279.791 kb on - strand, within OH686_15735at 3279.791 kb on - strand, within OH686_15735at 3279.791 kb on - strand, within OH686_15735at 3279.863 kb on - strand, within OH686_15735at 3279.863 kb on - strand, within OH686_15735at 3280.195 kb on + strandat 3280.195 kb on + strandat 3280.195 kb on + strandat 3280.195 kb on + strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.277 kb on - strandat 3280.277 kb on - strandat 3280.277 kb on - strandat 3280.277 kb on - strandat 3280.277 kb on - strandat 3281.117 kb on + strand, within OH686_15745at 3281.117 kb on + strand, within OH686_15745at 3281.118 kb on - strand, within OH686_15745at 3281.118 kb on - strand, within OH686_15745at 3281.118 kb on - strand, within OH686_15745at 3281.118 kb on - strand, within OH686_15745at 3281.118 kb on - strand, within OH686_15745

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,278,799 + +0.0
3,278,799 + -0.1
3,278,799 + -0.1
3,278,799 + -0.8
3,278,799 + -0.8
3,278,799 + -0.6
3,278,799 + +1.2
3,278,799 + +0.3
3,278,799 + +0.2
3,278,799 + +0.5
3,278,799 + +0.2
3,278,799 + +0.7
3,278,799 + -0.6
3,278,799 + +0.1
3,278,799 + +0.7
3,278,799 + +0.1
3,278,799 + -0.1
3,278,799 + +0.7
3,278,800 - +1.4
3,278,800 - +0.4
3,278,800 - +0.6
3,278,800 - +0.6
3,278,800 - +1.6
3,278,800 - -0.3
3,278,800 - +0.5
3,278,800 - +0.4
3,278,800 - +0.1
3,278,800 - -0.8
3,278,800 - +0.6
3,278,800 - +0.4
3,278,800 - +0.8
3,278,800 - +0.5
3,278,800 - -1.9
3,278,800 - +0.9
3,278,800 - -0.3
3,278,800 - +1.4
3,278,800 - +0.8
3,278,800 - +0.7
3,278,800 - -0.3
3,278,800 - -0.6
3,278,800 - -0.6
3,278,800 - +0.4
3,278,800 - -0.3
3,278,800 - +1.3
3,278,801 - -0.4
3,278,846 + -0.7
3,278,913 - OH686_15730 0.15 +0.0
3,279,003 + OH686_15730 0.27 +0.3
3,279,004 - OH686_15730 0.27 +0.6
3,279,004 - OH686_15730 0.27 +0.4
3,279,090 + OH686_15730 0.38 +0.2
3,279,090 + OH686_15730 0.38 -0.5
3,279,091 - OH686_15730 0.38 +0.4
3,279,091 - OH686_15730 0.38 -1.0
3,279,091 - OH686_15730 0.38 +0.1
3,279,091 - OH686_15730 0.38 -0.1
3,279,105 + OH686_15730 0.40 -0.5
3,279,106 - OH686_15730 0.40 +0.1
3,279,106 - OH686_15730 0.40 -0.9
3,279,121 + OH686_15730 0.42 +0.7
3,279,121 + OH686_15730 0.42 -0.4
3,279,122 - OH686_15730 0.42 -1.2
3,279,122 - OH686_15730 0.42 -0.2
3,279,122 - OH686_15730 0.42 -0.5
3,279,122 - OH686_15730 0.42 -1.4
3,279,122 - OH686_15730 0.42 -1.5
3,279,207 + OH686_15730 0.54 +0.3
3,279,207 + OH686_15730 0.54 -0.8
3,279,208 - OH686_15730 0.54 +0.1
3,279,216 + OH686_15730 0.55 -0.3
3,279,216 + OH686_15730 0.55 +0.2
3,279,217 - OH686_15730 0.55 +0.1
3,279,217 - OH686_15730 0.55 -0.2
3,279,217 - OH686_15730 0.55 -0.2
3,279,230 + OH686_15730 0.57 +0.1
3,279,231 - OH686_15730 0.57 -0.3
3,279,231 - OH686_15730 0.57 -0.2
3,279,238 - OH686_15730 0.58 +0.7
3,279,393 + OH686_15730 0.78 +1.0
3,279,393 + OH686_15730 0.78 +0.7
3,279,393 + OH686_15730 0.78 -1.8
3,279,393 + OH686_15730 0.78 +0.3
3,279,394 - OH686_15730 0.78 +2.6
3,279,394 - OH686_15730 0.78 +0.8
3,279,394 - OH686_15730 0.78 +0.5
3,279,513 + +0.4
3,279,513 + +0.3
3,279,772 + OH686_15735 0.35 +0.7
3,279,772 + OH686_15735 0.35 -1.2
3,279,773 - OH686_15735 0.35 +0.1
3,279,773 - OH686_15735 0.35 +0.1
3,279,790 + OH686_15735 0.38 +1.3
3,279,790 + OH686_15735 0.38 -0.8
3,279,790 + OH686_15735 0.38 -0.1
3,279,791 - OH686_15735 0.38 +0.8
3,279,791 - OH686_15735 0.38 -0.2
3,279,791 - OH686_15735 0.38 +1.2
3,279,791 - OH686_15735 0.38 +1.3
3,279,863 - OH686_15735 0.49 -0.5
3,279,863 - OH686_15735 0.49 +0.8
3,280,195 + -0.5
3,280,195 + +0.6
3,280,195 + -0.5
3,280,195 + -0.6
3,280,196 - -0.2
3,280,196 - -0.7
3,280,196 - -0.4
3,280,196 - -0.6
3,280,196 - -0.5
3,280,196 - +0.7
3,280,196 - -0.7
3,280,277 - +0.2
3,280,277 - -1.2
3,280,277 - +0.2
3,280,277 - +0.4
3,280,277 - -1.1
3,281,117 + OH686_15745 0.45 -0.6
3,281,117 + OH686_15745 0.45 -0.4
3,281,118 - OH686_15745 0.45 +1.0
3,281,118 - OH686_15745 0.45 +0.7
3,281,118 - OH686_15745 0.45 +1.0
3,281,118 - OH686_15745 0.45 +0.5
3,281,118 - OH686_15745 0.45 +0.6

Or see this region's nucleotide sequence