Strain Fitness in Pseudomonas sp. S08-1 around OH686_14375

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_14365 and OH686_14370 overlap by 4 nucleotidesOH686_14370 and OH686_14375 overlap by 4 nucleotidesOH686_14375 and OH686_14380 overlap by 4 nucleotides OH686_14365: OH686_14365 - dTDP-4-dehydrorhamnose reductase, at 2,999,343 to 3,000,209 _14365 OH686_14370: OH686_14370 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 3,000,206 to 3,000,751 _14370 OH686_14375: OH686_14375 - glucose-1-phosphate thymidylyltransferase, at 3,000,748 to 3,001,620 _14375 OH686_14380: OH686_14380 - dTDP-glucose 4,6-dehydratase, at 3,001,617 to 3,002,681 _14380 Position (kb) 3000 3001 3002Strain fitness (log2 ratio) -2 -1 0 1at 3000.720 kb on - strandat 3000.779 kb on + strandat 3000.779 kb on + strandat 3000.779 kb on + strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.817 kb on + strandat 3000.818 kb on - strandat 3000.915 kb on - strand, within OH686_14375at 3000.915 kb on - strand, within OH686_14375at 3000.915 kb on - strand, within OH686_14375at 3001.011 kb on - strand, within OH686_14375at 3001.011 kb on - strand, within OH686_14375at 3001.101 kb on - strand, within OH686_14375at 3001.101 kb on - strand, within OH686_14375at 3001.101 kb on - strand, within OH686_14375at 3001.518 kb on - strand, within OH686_14375at 3001.518 kb on - strand, within OH686_14375at 3001.536 kb on - strandat 3001.648 kb on + strandat 3001.648 kb on + strandat 3001.648 kb on + strandat 3001.648 kb on + strandat 3001.648 kb on + strandat 3001.648 kb on + strandat 3001.649 kb on - strandat 3001.649 kb on - strandat 3001.649 kb on - strandat 3001.649 kb on - strandat 3001.649 kb on - strandat 3001.694 kb on - strandat 3001.714 kb on - strandat 3001.888 kb on - strand, within OH686_14380at 3001.888 kb on - strand, within OH686_14380at 3002.046 kb on + strand, within OH686_14380at 3002.114 kb on - strand, within OH686_14380at 3002.153 kb on - strand, within OH686_14380at 3002.274 kb on + strand, within OH686_14380

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,000,720 - +0.0
3,000,779 + -0.2
3,000,779 + +0.0
3,000,779 + -1.1
3,000,780 - +0.7
3,000,780 - -0.3
3,000,780 - +0.7
3,000,780 - -0.4
3,000,780 - -0.2
3,000,780 - +0.7
3,000,780 - -1.5
3,000,817 + +0.0
3,000,818 - -1.7
3,000,915 - OH686_14375 0.19 +1.0
3,000,915 - OH686_14375 0.19 -0.3
3,000,915 - OH686_14375 0.19 +1.0
3,001,011 - OH686_14375 0.30 +0.0
3,001,011 - OH686_14375 0.30 -0.3
3,001,101 - OH686_14375 0.40 -0.3
3,001,101 - OH686_14375 0.40 +1.0
3,001,101 - OH686_14375 0.40 +0.5
3,001,518 - OH686_14375 0.88 +0.0
3,001,518 - OH686_14375 0.88 -0.3
3,001,536 - -1.1
3,001,648 + -0.3
3,001,648 + -1.8
3,001,648 + +0.5
3,001,648 + -0.1
3,001,648 + -1.0
3,001,648 + -0.2
3,001,649 - -0.4
3,001,649 - -0.0
3,001,649 - +0.3
3,001,649 - +0.7
3,001,649 - -0.4
3,001,694 - +0.0
3,001,714 - +0.0
3,001,888 - OH686_14380 0.25 -0.3
3,001,888 - OH686_14380 0.25 -0.3
3,002,046 + OH686_14380 0.40 +0.0
3,002,114 - OH686_14380 0.47 -0.3
3,002,153 - OH686_14380 0.50 -0.3
3,002,274 + OH686_14380 0.62 +0.0

Or see this region's nucleotide sequence