Strain Fitness in Pseudomonas sp. S08-1 around OH686_13750

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13745 and OH686_13750 are separated by 34 nucleotidesOH686_13750 and OH686_13755 are separated by 412 nucleotidesOH686_13755 and OH686_13760 are separated by 35 nucleotides OH686_13745: OH686_13745 - AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination, at 2,884,514 to 2,886,007 _13745 OH686_13750: OH686_13750 - hypothetical protein, at 2,886,042 to 2,886,302 _13750 OH686_13755: OH686_13755 - Nitrogen regulatory protein P-II, GlnK, at 2,886,715 to 2,887,053 _13755 OH686_13760: OH686_13760 - Ammonium transporter, at 2,887,089 to 2,888,405 _13760 Position (kb) 2886 2887Strain fitness (log2 ratio) -2 -1 0 1 2at 2885.078 kb on + strand, within OH686_13745at 2885.078 kb on + strand, within OH686_13745at 2885.078 kb on + strand, within OH686_13745at 2885.078 kb on + strand, within OH686_13745at 2885.078 kb on + strand, within OH686_13745at 2885.079 kb on - strand, within OH686_13745at 2885.079 kb on - strand, within OH686_13745at 2885.079 kb on - strand, within OH686_13745at 2885.497 kb on + strand, within OH686_13745at 2885.497 kb on + strand, within OH686_13745at 2885.497 kb on + strand, within OH686_13745at 2885.498 kb on - strand, within OH686_13745at 2885.498 kb on - strand, within OH686_13745at 2885.498 kb on - strand, within OH686_13745at 2885.498 kb on - strand, within OH686_13745at 2885.498 kb on - strand, within OH686_13745at 2885.651 kb on + strand, within OH686_13745at 2885.652 kb on - strand, within OH686_13745at 2886.043 kb on + strandat 2886.043 kb on + strandat 2886.043 kb on + strandat 2886.044 kb on - strandat 2886.044 kb on - strandat 2886.044 kb on - strandat 2886.247 kb on - strand, within OH686_13750at 2886.311 kb on + strandat 2886.312 kb on - strandat 2886.312 kb on - strandat 2886.312 kb on - strandat 2886.338 kb on + strandat 2886.338 kb on + strandat 2886.338 kb on + strandat 2886.339 kb on - strandat 2886.339 kb on - strandat 2886.339 kb on - strandat 2886.339 kb on - strandat 2886.406 kb on + strandat 2886.469 kb on + strandat 2886.470 kb on - strandat 2886.470 kb on - strandat 2886.470 kb on - strandat 2886.470 kb on - strandat 2886.470 kb on - strandat 2886.470 kb on - strandat 2886.498 kb on + strandat 2886.657 kb on + strandat 2886.657 kb on + strandat 2886.657 kb on + strandat 2886.658 kb on - strandat 2887.051 kb on + strandat 2887.051 kb on + strandat 2887.051 kb on + strandat 2887.051 kb on + strandat 2887.051 kb on + strandat 2887.052 kb on - strandat 2887.052 kb on - strandat 2887.052 kb on - strandat 2887.101 kb on - strandat 2887.101 kb on - strandat 2887.114 kb on + strandat 2887.114 kb on + strandat 2887.115 kb on - strandat 2887.115 kb on - strandat 2887.115 kb on - strandat 2887.135 kb on + strandat 2887.135 kb on + strandat 2887.168 kb on + strandat 2887.168 kb on + strandat 2887.168 kb on + strandat 2887.169 kb on - strandat 2887.251 kb on + strand, within OH686_13760at 2887.251 kb on + strand, within OH686_13760at 2887.252 kb on - strand, within OH686_13760

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,885,078 + OH686_13745 0.38 -0.2
2,885,078 + OH686_13745 0.38 +1.0
2,885,078 + OH686_13745 0.38 -0.6
2,885,078 + OH686_13745 0.38 -0.2
2,885,078 + OH686_13745 0.38 +0.0
2,885,079 - OH686_13745 0.38 +0.9
2,885,079 - OH686_13745 0.38 +0.1
2,885,079 - OH686_13745 0.38 -1.4
2,885,497 + OH686_13745 0.66 -0.5
2,885,497 + OH686_13745 0.66 -0.2
2,885,497 + OH686_13745 0.66 -0.4
2,885,498 - OH686_13745 0.66 +0.1
2,885,498 - OH686_13745 0.66 -0.1
2,885,498 - OH686_13745 0.66 -0.5
2,885,498 - OH686_13745 0.66 +0.2
2,885,498 - OH686_13745 0.66 -0.6
2,885,651 + OH686_13745 0.76 +0.4
2,885,652 - OH686_13745 0.76 -0.9
2,886,043 + +2.4
2,886,043 + -0.0
2,886,043 + +0.1
2,886,044 - -0.1
2,886,044 - -0.2
2,886,044 - +0.9
2,886,247 - OH686_13750 0.79 +1.0
2,886,311 + +0.5
2,886,312 - -0.6
2,886,312 - -0.9
2,886,312 - -1.8
2,886,338 + -1.0
2,886,338 + -1.0
2,886,338 + -0.3
2,886,339 - +0.7
2,886,339 - +0.2
2,886,339 - +0.8
2,886,339 - +1.1
2,886,406 + -1.0
2,886,469 + -0.8
2,886,470 - +0.7
2,886,470 - +0.1
2,886,470 - +0.3
2,886,470 - +1.3
2,886,470 - -1.4
2,886,470 - +0.7
2,886,498 + -0.4
2,886,657 + -0.1
2,886,657 + -0.9
2,886,657 + +1.4
2,886,658 - -0.8
2,887,051 + -0.8
2,887,051 + -0.3
2,887,051 + -2.2
2,887,051 + -1.5
2,887,051 + -0.5
2,887,052 - -1.8
2,887,052 - -0.9
2,887,052 - -2.2
2,887,101 - +0.5
2,887,101 - -0.6
2,887,114 + +0.2
2,887,114 + +0.4
2,887,115 - +0.7
2,887,115 - +1.3
2,887,115 - -0.1
2,887,135 + -0.0
2,887,135 + -0.1
2,887,168 + -1.1
2,887,168 + -0.1
2,887,168 + -0.1
2,887,169 - +0.7
2,887,251 + OH686_13760 0.12 -0.2
2,887,251 + OH686_13760 0.12 -0.5
2,887,252 - OH686_13760 0.12 -0.3

Or see this region's nucleotide sequence