Strain Fitness in Pseudomonas sp. S08-1 around OH686_13360

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13355 and OH686_13360 are separated by 83 nucleotidesOH686_13360 and OH686_13365 are separated by 60 nucleotidesOH686_13365 and OH686_13370 overlap by 129 nucleotidesOH686_13370 and OH686_13375 overlap by 26 nucleotidesOH686_13375 and OH686_13380 are separated by 14 nucleotides OH686_13355: OH686_13355 - hypothetical protein, at 2,808,673 to 2,809,467 _13355 OH686_13360: OH686_13360 - hypothetical protein, at 2,809,551 to 2,809,730 _13360 OH686_13365: OH686_13365 - CDS, at 2,809,791 to 2,809,955 _13365 OH686_13370: OH686_13370 - hypothetical protein' product='hypothetical protein, at 2,809,827 to 2,810,138 _13370 OH686_13375: OH686_13375 - N5-carboxyaminoimidazole ribonucleotide mutase , at 2,810,113 to 2,810,601 _13375 OH686_13380: OH686_13380 - N5-carboxyaminoimidazole ribonucleotide synthase , at 2,810,616 to 2,811,698 _13380 Position (kb) 2809 2810Strain fitness (log2 ratio) -2 -1 0 1 2at 2808.681 kb on + strandat 2808.681 kb on + strandat 2808.682 kb on - strandat 2809.048 kb on + strand, within OH686_13355at 2809.048 kb on + strand, within OH686_13355at 2809.049 kb on - strand, within OH686_13355at 2809.049 kb on - strand, within OH686_13355at 2809.049 kb on - strand, within OH686_13355at 2809.049 kb on - strand, within OH686_13355at 2809.073 kb on + strand, within OH686_13355at 2809.073 kb on + strand, within OH686_13355at 2809.074 kb on - strand, within OH686_13355at 2809.157 kb on + strand, within OH686_13355at 2809.157 kb on + strand, within OH686_13355at 2809.157 kb on + strand, within OH686_13355at 2809.157 kb on + strand, within OH686_13355at 2809.158 kb on - strand, within OH686_13355at 2809.158 kb on - strand, within OH686_13355at 2809.166 kb on + strand, within OH686_13355at 2809.166 kb on + strand, within OH686_13355at 2809.208 kb on + strand, within OH686_13355at 2809.209 kb on - strand, within OH686_13355at 2809.235 kb on + strand, within OH686_13355at 2809.235 kb on + strand, within OH686_13355at 2809.235 kb on + strand, within OH686_13355at 2809.235 kb on + strand, within OH686_13355at 2809.235 kb on + strand, within OH686_13355at 2809.235 kb on + strand, within OH686_13355at 2809.236 kb on - strand, within OH686_13355at 2809.236 kb on - strand, within OH686_13355at 2809.384 kb on + strand, within OH686_13355at 2809.384 kb on + strand, within OH686_13355at 2809.384 kb on + strand, within OH686_13355at 2809.385 kb on - strand, within OH686_13355at 2809.394 kb on + strandat 2809.394 kb on + strandat 2809.394 kb on + strandat 2809.394 kb on + strandat 2809.394 kb on + strandat 2809.395 kb on - strandat 2809.395 kb on - strandat 2809.395 kb on - strandat 2809.456 kb on + strandat 2809.457 kb on - strandat 2809.504 kb on - strandat 2809.504 kb on - strandat 2809.600 kb on + strand, within OH686_13360at 2809.600 kb on + strand, within OH686_13360at 2809.600 kb on + strand, within OH686_13360at 2809.600 kb on + strand, within OH686_13360at 2809.601 kb on - strand, within OH686_13360at 2809.730 kb on + strandat 2809.730 kb on + strandat 2809.731 kb on - strandat 2809.731 kb on - strandat 2809.731 kb on - strandat 2809.773 kb on + strandat 2809.773 kb on + strandat 2809.773 kb on + strandat 2809.773 kb on + strandat 2809.773 kb on + strandat 2809.774 kb on - strandat 2809.774 kb on - strandat 2809.883 kb on - strandat 2809.902 kb on - strandat 2809.929 kb on + strandat 2809.930 kb on - strandat 2809.940 kb on + strandat 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.611 kb on + strandat 2810.611 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,808,681 + +0.4
2,808,681 + -0.0
2,808,682 - +0.6
2,809,048 + OH686_13355 0.47 -1.5
2,809,048 + OH686_13355 0.47 +1.1
2,809,049 - OH686_13355 0.47 +0.9
2,809,049 - OH686_13355 0.47 +0.8
2,809,049 - OH686_13355 0.47 +0.5
2,809,049 - OH686_13355 0.47 -1.4
2,809,073 + OH686_13355 0.50 -0.2
2,809,073 + OH686_13355 0.50 -0.5
2,809,074 - OH686_13355 0.50 -0.4
2,809,157 + OH686_13355 0.61 -1.3
2,809,157 + OH686_13355 0.61 +0.1
2,809,157 + OH686_13355 0.61 -0.3
2,809,157 + OH686_13355 0.61 -0.1
2,809,158 - OH686_13355 0.61 +0.3
2,809,158 - OH686_13355 0.61 +0.9
2,809,166 + OH686_13355 0.62 -0.0
2,809,166 + OH686_13355 0.62 +0.2
2,809,208 + OH686_13355 0.67 +0.6
2,809,209 - OH686_13355 0.67 +0.7
2,809,235 + OH686_13355 0.71 -0.1
2,809,235 + OH686_13355 0.71 -2.6
2,809,235 + OH686_13355 0.71 -0.2
2,809,235 + OH686_13355 0.71 -0.1
2,809,235 + OH686_13355 0.71 +0.2
2,809,235 + OH686_13355 0.71 -0.8
2,809,236 - OH686_13355 0.71 +2.0
2,809,236 - OH686_13355 0.71 -0.0
2,809,384 + OH686_13355 0.89 +0.4
2,809,384 + OH686_13355 0.89 +0.9
2,809,384 + OH686_13355 0.89 -0.4
2,809,385 - OH686_13355 0.90 +1.4
2,809,394 + +0.3
2,809,394 + -0.1
2,809,394 + -0.3
2,809,394 + -0.3
2,809,394 + +0.4
2,809,395 - +0.5
2,809,395 - -0.4
2,809,395 - +0.6
2,809,456 + +0.4
2,809,457 - +1.0
2,809,504 - +0.7
2,809,504 - +0.5
2,809,600 + OH686_13360 0.27 +0.6
2,809,600 + OH686_13360 0.27 +0.6
2,809,600 + OH686_13360 0.27 +0.1
2,809,600 + OH686_13360 0.27 +0.7
2,809,601 - OH686_13360 0.28 +0.7
2,809,730 + -0.3
2,809,730 + +0.9
2,809,731 - -0.1
2,809,731 - -1.7
2,809,731 - -1.6
2,809,773 + -0.3
2,809,773 + +0.1
2,809,773 + +0.7
2,809,773 + +0.4
2,809,773 + +0.6
2,809,774 - -0.7
2,809,774 - -1.7
2,809,883 - +0.0
2,809,902 - +0.4
2,809,929 + +0.1
2,809,930 - +0.2
2,809,940 + -1.4
2,809,999 + OH686_13370 0.55 -1.3
2,809,999 + OH686_13370 0.55 -0.1
2,809,999 + OH686_13370 0.55 +0.8
2,809,999 + OH686_13370 0.55 -0.4
2,809,999 + OH686_13370 0.55 -0.8
2,809,999 + OH686_13370 0.55 +0.4
2,809,999 + OH686_13370 0.55 -0.7
2,809,999 + OH686_13370 0.55 -1.1
2,809,999 + OH686_13370 0.55 -0.7
2,809,999 + OH686_13370 0.55 +0.6
2,809,999 + OH686_13370 0.55 -0.6
2,810,040 + OH686_13370 0.68 -1.6
2,810,040 + OH686_13370 0.68 -0.2
2,810,040 + OH686_13370 0.68 -0.1
2,810,040 + OH686_13370 0.68 -1.4
2,810,040 + OH686_13370 0.68 +0.1
2,810,040 + OH686_13370 0.68 +0.3
2,810,040 + OH686_13370 0.68 -1.4
2,810,040 + OH686_13370 0.68 +0.0
2,810,040 + OH686_13370 0.68 +0.4
2,810,100 + OH686_13370 0.88 +0.2
2,810,100 + OH686_13370 0.88 -1.8
2,810,100 + OH686_13370 0.88 -0.5
2,810,100 + OH686_13370 0.88 -0.9
2,810,100 + OH686_13370 0.88 -0.1
2,810,100 + OH686_13370 0.88 -1.8
2,810,100 + OH686_13370 0.88 -2.2
2,810,611 + +0.6
2,810,611 + -0.7
2,810,613 + -1.5
2,810,613 + +1.6
2,810,613 + -0.1
2,810,613 + -0.2
2,810,613 + -1.4
2,810,613 + -0.6
2,810,613 + +0.7
2,810,613 + +0.8
2,810,613 + +1.0
2,810,613 + -1.0
2,810,613 + -0.6
2,810,613 + -0.7
2,810,613 + +0.0
2,810,613 + +1.0
2,810,613 + -1.0
2,810,613 + -0.9
2,810,613 + -1.7

Or see this region's nucleotide sequence