Strain Fitness in Pseudomonas sp. S08-1 around OH686_13345

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13335 and OH686_13340 overlap by 4 nucleotidesOH686_13340 and OH686_13345 overlap by 1 nucleotidesOH686_13345 and OH686_13350 are separated by 196 nucleotides OH686_13335: OH686_13335 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL, at 2,805,151 to 2,805,885 _13335 OH686_13340: OH686_13340 - Glutamate/aspartate ABC transporter, permease protein GltK, at 2,805,882 to 2,806,547 _13340 OH686_13345: OH686_13345 - Glutamate/aspartate ABC transporter, permease protein GltJ, at 2,806,547 to 2,807,293 _13345 OH686_13350: OH686_13350 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI, at 2,807,490 to 2,808,401 _13350 Position (kb) 2806 2807 2808Strain fitness (log2 ratio) -1 0 1 2 3at 2805.879 kb on + strandat 2805.879 kb on + strandat 2805.879 kb on + strandat 2805.879 kb on + strandat 2805.879 kb on + strandat 2805.879 kb on + strandat 2805.880 kb on - strandat 2805.880 kb on - strandat 2805.880 kb on - strandat 2805.880 kb on - strandat 2805.880 kb on - strandat 2805.880 kb on - strandat 2805.880 kb on - strandat 2805.880 kb on - strandat 2805.885 kb on + strandat 2805.885 kb on + strandat 2805.885 kb on + strandat 2805.886 kb on - strandat 2805.886 kb on - strandat 2805.946 kb on + strandat 2805.946 kb on + strandat 2805.946 kb on + strandat 2805.946 kb on + strandat 2805.947 kb on - strandat 2805.947 kb on - strandat 2805.947 kb on - strandat 2805.947 kb on - strandat 2805.947 kb on - strandat 2805.947 kb on - strandat 2805.947 kb on - strandat 2805.947 kb on - strandat 2806.042 kb on + strand, within OH686_13340at 2806.042 kb on + strand, within OH686_13340at 2806.042 kb on + strand, within OH686_13340at 2806.043 kb on - strand, within OH686_13340at 2806.043 kb on - strand, within OH686_13340at 2806.043 kb on - strand, within OH686_13340at 2806.043 kb on - strand, within OH686_13340at 2806.043 kb on - strand, within OH686_13340at 2806.228 kb on + strand, within OH686_13340at 2806.229 kb on - strand, within OH686_13340at 2806.229 kb on - strand, within OH686_13340at 2806.330 kb on + strand, within OH686_13340at 2806.330 kb on + strand, within OH686_13340at 2806.330 kb on + strand, within OH686_13340at 2806.330 kb on + strand, within OH686_13340at 2806.331 kb on - strand, within OH686_13340at 2806.331 kb on - strand, within OH686_13340at 2806.331 kb on - strand, within OH686_13340at 2806.372 kb on + strand, within OH686_13340at 2806.372 kb on + strand, within OH686_13340at 2806.372 kb on + strand, within OH686_13340at 2806.372 kb on + strand, within OH686_13340at 2806.372 kb on + strand, within OH686_13340at 2806.373 kb on - strand, within OH686_13340at 2806.373 kb on - strand, within OH686_13340at 2806.373 kb on - strand, within OH686_13340at 2806.373 kb on - strand, within OH686_13340at 2806.373 kb on - strand, within OH686_13340at 2806.381 kb on + strand, within OH686_13340at 2806.381 kb on + strand, within OH686_13340at 2806.381 kb on + strand, within OH686_13340at 2806.381 kb on + strand, within OH686_13340at 2806.381 kb on + strand, within OH686_13340at 2806.381 kb on + strand, within OH686_13340at 2806.381 kb on - strand, within OH686_13340at 2806.382 kb on - strand, within OH686_13340at 2806.382 kb on - strand, within OH686_13340at 2806.382 kb on - strand, within OH686_13340at 2806.382 kb on - strand, within OH686_13340at 2806.382 kb on - strand, within OH686_13340at 2806.382 kb on - strand, within OH686_13340at 2806.382 kb on - strand, within OH686_13340at 2806.638 kb on + strand, within OH686_13345at 2806.638 kb on + strand, within OH686_13345at 2806.638 kb on + strand, within OH686_13345at 2806.638 kb on + strand, within OH686_13345at 2806.638 kb on + strand, within OH686_13345at 2806.638 kb on + strand, within OH686_13345at 2806.638 kb on + strand, within OH686_13345at 2806.638 kb on + strand, within OH686_13345at 2806.638 kb on + strand, within OH686_13345at 2806.639 kb on - strand, within OH686_13345at 2806.639 kb on - strand, within OH686_13345at 2806.639 kb on - strand, within OH686_13345at 2806.639 kb on - strand, within OH686_13345at 2806.639 kb on - strand, within OH686_13345at 2806.639 kb on - strand, within OH686_13345at 2806.639 kb on - strand, within OH686_13345at 2806.639 kb on - strand, within OH686_13345at 2806.639 kb on - strand, within OH686_13345at 2806.827 kb on + strand, within OH686_13345at 2806.827 kb on + strand, within OH686_13345at 2806.827 kb on + strand, within OH686_13345at 2806.827 kb on + strand, within OH686_13345at 2806.827 kb on + strand, within OH686_13345at 2806.828 kb on - strand, within OH686_13345at 2806.828 kb on - strand, within OH686_13345at 2806.828 kb on - strand, within OH686_13345at 2807.041 kb on - strand, within OH686_13345at 2807.041 kb on - strand, within OH686_13345at 2807.041 kb on - strand, within OH686_13345at 2807.041 kb on - strand, within OH686_13345at 2807.041 kb on - strand, within OH686_13345at 2807.069 kb on + strand, within OH686_13345at 2807.069 kb on + strand, within OH686_13345at 2807.070 kb on - strand, within OH686_13345at 2807.070 kb on - strand, within OH686_13345at 2807.070 kb on - strand, within OH686_13345at 2807.070 kb on - strand, within OH686_13345at 2807.070 kb on - strand, within OH686_13345at 2807.091 kb on + strand, within OH686_13345at 2807.091 kb on + strand, within OH686_13345at 2807.091 kb on + strand, within OH686_13345at 2807.091 kb on + strand, within OH686_13345at 2807.091 kb on + strand, within OH686_13345at 2807.091 kb on + strand, within OH686_13345at 2807.091 kb on + strand, within OH686_13345at 2807.091 kb on + strand, within OH686_13345at 2807.092 kb on - strand, within OH686_13345at 2807.092 kb on - strand, within OH686_13345at 2807.092 kb on - strand, within OH686_13345at 2807.092 kb on - strand, within OH686_13345at 2807.092 kb on - strand, within OH686_13345at 2807.232 kb on + strandat 2807.232 kb on + strandat 2807.232 kb on + strandat 2807.232 kb on + strandat 2807.232 kb on + strandat 2807.233 kb on - strandat 2807.233 kb on - strandat 2807.233 kb on - strandat 2807.233 kb on - strandat 2807.233 kb on - strandat 2807.233 kb on - strandat 2807.233 kb on - strandat 2807.286 kb on + strandat 2807.286 kb on + strandat 2807.286 kb on + strandat 2807.286 kb on + strandat 2807.286 kb on + strandat 2807.286 kb on + strandat 2807.286 kb on + strandat 2807.287 kb on - strandat 2807.287 kb on - strandat 2807.287 kb on - strandat 2807.287 kb on - strandat 2807.287 kb on - strandat 2807.287 kb on - strandat 2807.287 kb on - strandat 2807.287 kb on - strandat 2807.287 kb on - strandat 2807.287 kb on - strandat 2807.300 kb on + strandat 2807.300 kb on + strandat 2807.301 kb on - strandat 2807.440 kb on + strandat 2807.440 kb on + strandat 2807.440 kb on + strandat 2807.440 kb on + strandat 2807.441 kb on - strandat 2807.441 kb on - strandat 2807.441 kb on - strandat 2807.441 kb on - strandat 2807.441 kb on - strandat 2807.491 kb on + strandat 2807.491 kb on + strandat 2807.491 kb on + strandat 2807.491 kb on + strandat 2807.491 kb on + strandat 2807.491 kb on + strandat 2807.491 kb on + strandat 2807.492 kb on - strandat 2807.492 kb on - strandat 2807.492 kb on - strandat 2807.608 kb on + strand, within OH686_13350at 2807.608 kb on + strand, within OH686_13350at 2807.608 kb on + strand, within OH686_13350at 2807.608 kb on + strand, within OH686_13350at 2807.609 kb on - strand, within OH686_13350at 2807.609 kb on - strand, within OH686_13350at 2807.609 kb on - strand, within OH686_13350at 2807.704 kb on + strand, within OH686_13350at 2807.704 kb on + strand, within OH686_13350at 2807.704 kb on + strand, within OH686_13350at 2807.704 kb on + strand, within OH686_13350at 2807.704 kb on + strand, within OH686_13350at 2807.704 kb on + strand, within OH686_13350at 2807.704 kb on + strand, within OH686_13350at 2807.704 kb on + strand, within OH686_13350at 2807.704 kb on + strand, within OH686_13350at 2807.704 kb on + strand, within OH686_13350at 2807.704 kb on + strand, within OH686_13350at 2807.705 kb on - strand, within OH686_13350at 2807.705 kb on - strand, within OH686_13350at 2807.705 kb on - strand, within OH686_13350at 2807.705 kb on - strand, within OH686_13350at 2807.705 kb on - strand, within OH686_13350at 2807.705 kb on - strand, within OH686_13350at 2807.705 kb on - strand, within OH686_13350at 2807.705 kb on - strand, within OH686_13350at 2807.705 kb on - strand, within OH686_13350at 2807.714 kb on - strand, within OH686_13350at 2808.099 kb on + strand, within OH686_13350at 2808.099 kb on + strand, within OH686_13350at 2808.100 kb on - strand, within OH686_13350at 2808.100 kb on - strand, within OH686_13350at 2808.100 kb on - strand, within OH686_13350at 2808.136 kb on + strand, within OH686_13350at 2808.136 kb on + strand, within OH686_13350at 2808.137 kb on - strand, within OH686_13350at 2808.137 kb on - strand, within OH686_13350at 2808.137 kb on - strand, within OH686_13350at 2808.137 kb on - strand, within OH686_13350at 2808.137 kb on - strand, within OH686_13350at 2808.137 kb on - strand, within OH686_13350at 2808.137 kb on - strand, within OH686_13350at 2808.137 kb on - strand, within OH686_13350at 2808.137 kb on - strand, within OH686_13350at 2808.211 kb on + strand, within OH686_13350at 2808.212 kb on - strand, within OH686_13350at 2808.244 kb on + strand, within OH686_13350at 2808.244 kb on + strand, within OH686_13350at 2808.244 kb on + strand, within OH686_13350at 2808.244 kb on + strand, within OH686_13350at 2808.244 kb on + strand, within OH686_13350at 2808.244 kb on + strand, within OH686_13350at 2808.244 kb on + strand, within OH686_13350at 2808.245 kb on - strand, within OH686_13350at 2808.245 kb on - strand, within OH686_13350at 2808.245 kb on - strand, within OH686_13350

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,805,879 + +0.4
2,805,879 + +0.7
2,805,879 + +0.7
2,805,879 + +0.5
2,805,879 + +0.5
2,805,879 + -0.0
2,805,880 - -0.1
2,805,880 - +0.7
2,805,880 - +0.9
2,805,880 - +0.7
2,805,880 - +0.1
2,805,880 - +1.3
2,805,880 - +0.6
2,805,880 - +0.5
2,805,885 + +0.7
2,805,885 + +0.5
2,805,885 + +0.1
2,805,886 - +2.2
2,805,886 - +0.5
2,805,946 + +0.3
2,805,946 + +0.0
2,805,946 + +1.4
2,805,946 + +2.4
2,805,947 - +0.7
2,805,947 - -0.8
2,805,947 - +1.2
2,805,947 - +0.8
2,805,947 - +0.5
2,805,947 - +1.2
2,805,947 - +0.6
2,805,947 - +0.5
2,806,042 + OH686_13340 0.24 +0.7
2,806,042 + OH686_13340 0.24 -0.7
2,806,042 + OH686_13340 0.24 +0.3
2,806,043 - OH686_13340 0.24 +1.3
2,806,043 - OH686_13340 0.24 +0.9
2,806,043 - OH686_13340 0.24 +3.0
2,806,043 - OH686_13340 0.24 +0.3
2,806,043 - OH686_13340 0.24 +0.6
2,806,228 + OH686_13340 0.52 +0.4
2,806,229 - OH686_13340 0.52 +1.2
2,806,229 - OH686_13340 0.52 +1.3
2,806,330 + OH686_13340 0.67 +0.9
2,806,330 + OH686_13340 0.67 +0.3
2,806,330 + OH686_13340 0.67 +0.7
2,806,330 + OH686_13340 0.67 +1.2
2,806,331 - OH686_13340 0.67 -0.3
2,806,331 - OH686_13340 0.67 -0.5
2,806,331 - OH686_13340 0.67 +1.5
2,806,372 + OH686_13340 0.74 +0.1
2,806,372 + OH686_13340 0.74 +0.6
2,806,372 + OH686_13340 0.74 +0.5
2,806,372 + OH686_13340 0.74 +0.4
2,806,372 + OH686_13340 0.74 -0.5
2,806,373 - OH686_13340 0.74 +1.6
2,806,373 - OH686_13340 0.74 +0.7
2,806,373 - OH686_13340 0.74 +1.3
2,806,373 - OH686_13340 0.74 +1.2
2,806,373 - OH686_13340 0.74 +1.7
2,806,381 + OH686_13340 0.75 +0.2
2,806,381 + OH686_13340 0.75 +0.8
2,806,381 + OH686_13340 0.75 +1.8
2,806,381 + OH686_13340 0.75 +0.0
2,806,381 + OH686_13340 0.75 +0.7
2,806,381 + OH686_13340 0.75 +0.5
2,806,381 - OH686_13340 0.75 +0.7
2,806,382 - OH686_13340 0.75 +1.0
2,806,382 - OH686_13340 0.75 +1.0
2,806,382 - OH686_13340 0.75 +0.6
2,806,382 - OH686_13340 0.75 +0.8
2,806,382 - OH686_13340 0.75 -0.8
2,806,382 - OH686_13340 0.75 +0.2
2,806,382 - OH686_13340 0.75 +0.6
2,806,638 + OH686_13345 0.12 +0.2
2,806,638 + OH686_13345 0.12 +1.0
2,806,638 + OH686_13345 0.12 +0.6
2,806,638 + OH686_13345 0.12 +0.8
2,806,638 + OH686_13345 0.12 +1.0
2,806,638 + OH686_13345 0.12 +0.2
2,806,638 + OH686_13345 0.12 +0.5
2,806,638 + OH686_13345 0.12 +0.1
2,806,638 + OH686_13345 0.12 +0.9
2,806,639 - OH686_13345 0.12 +0.5
2,806,639 - OH686_13345 0.12 +0.9
2,806,639 - OH686_13345 0.12 +1.0
2,806,639 - OH686_13345 0.12 +0.7
2,806,639 - OH686_13345 0.12 +1.5
2,806,639 - OH686_13345 0.12 +1.0
2,806,639 - OH686_13345 0.12 +0.4
2,806,639 - OH686_13345 0.12 -0.4
2,806,639 - OH686_13345 0.12 +0.5
2,806,827 + OH686_13345 0.37 +1.2
2,806,827 + OH686_13345 0.37 +0.8
2,806,827 + OH686_13345 0.37 +1.3
2,806,827 + OH686_13345 0.37 +1.3
2,806,827 + OH686_13345 0.37 +0.4
2,806,828 - OH686_13345 0.38 +0.9
2,806,828 - OH686_13345 0.38 +0.6
2,806,828 - OH686_13345 0.38 -0.8
2,807,041 - OH686_13345 0.66 +1.2
2,807,041 - OH686_13345 0.66 +0.8
2,807,041 - OH686_13345 0.66 +0.5
2,807,041 - OH686_13345 0.66 +0.9
2,807,041 - OH686_13345 0.66 +0.5
2,807,069 + OH686_13345 0.70 -0.3
2,807,069 + OH686_13345 0.70 +1.0
2,807,070 - OH686_13345 0.70 +1.2
2,807,070 - OH686_13345 0.70 +2.4
2,807,070 - OH686_13345 0.70 -1.1
2,807,070 - OH686_13345 0.70 +1.0
2,807,070 - OH686_13345 0.70 +0.8
2,807,091 + OH686_13345 0.73 -0.8
2,807,091 + OH686_13345 0.73 +0.7
2,807,091 + OH686_13345 0.73 +0.7
2,807,091 + OH686_13345 0.73 +0.4
2,807,091 + OH686_13345 0.73 +0.9
2,807,091 + OH686_13345 0.73 +1.0
2,807,091 + OH686_13345 0.73 +0.9
2,807,091 + OH686_13345 0.73 +0.3
2,807,092 - OH686_13345 0.73 +0.9
2,807,092 - OH686_13345 0.73 +0.5
2,807,092 - OH686_13345 0.73 +0.7
2,807,092 - OH686_13345 0.73 +0.6
2,807,092 - OH686_13345 0.73 +0.5
2,807,232 + +0.1
2,807,232 + +0.5
2,807,232 + +0.8
2,807,232 + +1.0
2,807,232 + +1.4
2,807,233 - +0.5
2,807,233 - +0.4
2,807,233 - +0.3
2,807,233 - +1.4
2,807,233 - +0.3
2,807,233 - +0.0
2,807,233 - +1.1
2,807,286 + +0.6
2,807,286 + +0.2
2,807,286 + -0.4
2,807,286 + +1.0
2,807,286 + +1.3
2,807,286 + -0.0
2,807,286 + -0.4
2,807,287 - +0.6
2,807,287 - +0.4
2,807,287 - +1.1
2,807,287 - +0.4
2,807,287 - +1.1
2,807,287 - +1.6
2,807,287 - +1.9
2,807,287 - +0.0
2,807,287 - +1.1
2,807,287 - +1.1
2,807,300 + -0.3
2,807,300 + +1.2
2,807,301 - +2.0
2,807,440 + +1.0
2,807,440 + +1.6
2,807,440 + -0.3
2,807,440 + +0.0
2,807,441 - +1.1
2,807,441 - +1.0
2,807,441 - +1.6
2,807,441 - +0.4
2,807,441 - +0.6
2,807,491 + +1.6
2,807,491 + +0.4
2,807,491 + +0.3
2,807,491 + +0.3
2,807,491 + +0.7
2,807,491 + -0.3
2,807,491 + +0.3
2,807,492 - +0.7
2,807,492 - +0.8
2,807,492 - +0.2
2,807,608 + OH686_13350 0.13 +0.0
2,807,608 + OH686_13350 0.13 +0.7
2,807,608 + OH686_13350 0.13 -0.3
2,807,608 + OH686_13350 0.13 -0.0
2,807,609 - OH686_13350 0.13 +0.7
2,807,609 - OH686_13350 0.13 +0.3
2,807,609 - OH686_13350 0.13 +0.2
2,807,704 + OH686_13350 0.23 +0.2
2,807,704 + OH686_13350 0.23 +0.2
2,807,704 + OH686_13350 0.23 +1.3
2,807,704 + OH686_13350 0.23 +0.5
2,807,704 + OH686_13350 0.23 +1.6
2,807,704 + OH686_13350 0.23 +1.1
2,807,704 + OH686_13350 0.23 +0.7
2,807,704 + OH686_13350 0.23 +1.6
2,807,704 + OH686_13350 0.23 +0.5
2,807,704 + OH686_13350 0.23 +0.3
2,807,704 + OH686_13350 0.23 +1.1
2,807,705 - OH686_13350 0.24 +0.7
2,807,705 - OH686_13350 0.24 +0.6
2,807,705 - OH686_13350 0.24 +0.9
2,807,705 - OH686_13350 0.24 +1.4
2,807,705 - OH686_13350 0.24 +1.1
2,807,705 - OH686_13350 0.24 +1.4
2,807,705 - OH686_13350 0.24 +1.0
2,807,705 - OH686_13350 0.24 +1.7
2,807,705 - OH686_13350 0.24 +2.6
2,807,714 - OH686_13350 0.25 +2.3
2,808,099 + OH686_13350 0.67 -0.2
2,808,099 + OH686_13350 0.67 +2.3
2,808,100 - OH686_13350 0.67 +1.0
2,808,100 - OH686_13350 0.67 +1.1
2,808,100 - OH686_13350 0.67 -0.2
2,808,136 + OH686_13350 0.71 +0.8
2,808,136 + OH686_13350 0.71 +0.5
2,808,137 - OH686_13350 0.71 +1.0
2,808,137 - OH686_13350 0.71 +0.9
2,808,137 - OH686_13350 0.71 +2.0
2,808,137 - OH686_13350 0.71 +0.1
2,808,137 - OH686_13350 0.71 +0.0
2,808,137 - OH686_13350 0.71 +1.4
2,808,137 - OH686_13350 0.71 -0.6
2,808,137 - OH686_13350 0.71 +0.5
2,808,137 - OH686_13350 0.71 +1.2
2,808,211 + OH686_13350 0.79 +1.0
2,808,212 - OH686_13350 0.79 +0.3
2,808,244 + OH686_13350 0.83 +0.5
2,808,244 + OH686_13350 0.83 +1.1
2,808,244 + OH686_13350 0.83 -0.5
2,808,244 + OH686_13350 0.83 +0.2
2,808,244 + OH686_13350 0.83 +0.7
2,808,244 + OH686_13350 0.83 +0.3
2,808,244 + OH686_13350 0.83 +0.8
2,808,245 - OH686_13350 0.83 +0.6
2,808,245 - OH686_13350 0.83 +0.3
2,808,245 - OH686_13350 0.83 +0.5

Or see this region's nucleotide sequence