Strain Fitness in Pseudomonas sp. S08-1 around OH686_13100

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13090 and OH686_13095 overlap by 102 nucleotidesOH686_13095 and OH686_13100 are separated by 89 nucleotidesOH686_13100 and OH686_13105 are separated by 105 nucleotides OH686_13090: OH686_13090 - hypothetical protein' product='hypothetical protein, at 2,757,141 to 2,757,350 _13090 OH686_13095: OH686_13095 - Transcriptional regulator, RpiR family, at 2,757,249 to 2,758,115 _13095 OH686_13100: OH686_13100 - hypothetical protein, at 2,758,205 to 2,758,405 _13100 OH686_13105: OH686_13105 - Delta 1-pyrroline-2-carboxylate reductase (NAD(P)H) , at 2,758,511 to 2,759,518 _13105 Position (kb) 2758 2759Strain fitness (log2 ratio) -2 -1 0 1at 2757.266 kb on + strandat 2757.266 kb on + strandat 2757.266 kb on + strandat 2757.266 kb on + strandat 2757.266 kb on + strandat 2757.560 kb on + strand, within OH686_13095at 2757.560 kb on + strand, within OH686_13095at 2757.560 kb on + strand, within OH686_13095at 2757.561 kb on + strand, within OH686_13095at 2757.561 kb on - strand, within OH686_13095at 2757.561 kb on - strand, within OH686_13095at 2757.648 kb on + strand, within OH686_13095at 2757.648 kb on + strand, within OH686_13095at 2757.648 kb on + strand, within OH686_13095at 2757.648 kb on + strand, within OH686_13095at 2757.649 kb on - strand, within OH686_13095at 2757.649 kb on - strand, within OH686_13095at 2757.727 kb on - strand, within OH686_13095at 2757.740 kb on + strand, within OH686_13095at 2757.740 kb on + strand, within OH686_13095at 2757.740 kb on + strand, within OH686_13095at 2757.740 kb on + strand, within OH686_13095at 2757.741 kb on - strand, within OH686_13095at 2757.741 kb on - strand, within OH686_13095at 2757.858 kb on - strand, within OH686_13095at 2757.858 kb on - strand, within OH686_13095at 2757.948 kb on + strand, within OH686_13095at 2757.948 kb on + strand, within OH686_13095at 2757.948 kb on + strand, within OH686_13095at 2757.948 kb on + strand, within OH686_13095at 2757.948 kb on + strand, within OH686_13095at 2757.948 kb on + strand, within OH686_13095at 2757.948 kb on + strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2757.949 kb on - strand, within OH686_13095at 2758.301 kb on + strand, within OH686_13100at 2758.301 kb on + strand, within OH686_13100at 2758.302 kb on - strand, within OH686_13100at 2758.302 kb on - strand, within OH686_13100at 2758.302 kb on - strand, within OH686_13100at 2758.302 kb on - strand, within OH686_13100at 2758.302 kb on - strand, within OH686_13100at 2758.302 kb on - strand, within OH686_13100at 2758.485 kb on - strandat 2758.650 kb on + strand, within OH686_13105at 2758.650 kb on + strand, within OH686_13105at 2758.650 kb on + strand, within OH686_13105at 2758.651 kb on - strand, within OH686_13105at 2758.651 kb on - strand, within OH686_13105at 2758.651 kb on - strand, within OH686_13105at 2758.651 kb on - strand, within OH686_13105at 2758.940 kb on + strand, within OH686_13105at 2758.940 kb on + strand, within OH686_13105at 2758.940 kb on + strand, within OH686_13105at 2758.940 kb on + strand, within OH686_13105at 2758.940 kb on + strand, within OH686_13105at 2758.940 kb on + strand, within OH686_13105at 2758.940 kb on + strand, within OH686_13105at 2758.940 kb on + strand, within OH686_13105at 2758.941 kb on - strand, within OH686_13105at 2758.941 kb on - strand, within OH686_13105at 2758.941 kb on - strand, within OH686_13105at 2758.941 kb on - strand, within OH686_13105at 2758.941 kb on - strand, within OH686_13105at 2758.941 kb on - strand, within OH686_13105at 2758.941 kb on - strand, within OH686_13105at 2758.941 kb on - strand, within OH686_13105at 2759.301 kb on - strand, within OH686_13105

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,757,266 + +0.9
2,757,266 + -0.2
2,757,266 + +0.7
2,757,266 + +0.0
2,757,266 + -0.1
2,757,560 + OH686_13095 0.36 +1.3
2,757,560 + OH686_13095 0.36 +0.4
2,757,560 + OH686_13095 0.36 +1.0
2,757,561 + OH686_13095 0.36 +0.6
2,757,561 - OH686_13095 0.36 +0.1
2,757,561 - OH686_13095 0.36 +1.2
2,757,648 + OH686_13095 0.46 +0.0
2,757,648 + OH686_13095 0.46 +0.2
2,757,648 + OH686_13095 0.46 -1.0
2,757,648 + OH686_13095 0.46 +0.6
2,757,649 - OH686_13095 0.46 -0.4
2,757,649 - OH686_13095 0.46 +0.6
2,757,727 - OH686_13095 0.55 +0.8
2,757,740 + OH686_13095 0.57 +0.3
2,757,740 + OH686_13095 0.57 +0.5
2,757,740 + OH686_13095 0.57 +1.0
2,757,740 + OH686_13095 0.57 +1.2
2,757,741 - OH686_13095 0.57 +1.0
2,757,741 - OH686_13095 0.57 +1.6
2,757,858 - OH686_13095 0.70 +0.8
2,757,858 - OH686_13095 0.70 -0.3
2,757,948 + OH686_13095 0.81 +1.5
2,757,948 + OH686_13095 0.81 +0.5
2,757,948 + OH686_13095 0.81 +1.0
2,757,948 + OH686_13095 0.81 +1.2
2,757,948 + OH686_13095 0.81 +1.3
2,757,948 + OH686_13095 0.81 +0.6
2,757,948 + OH686_13095 0.81 -1.1
2,757,949 - OH686_13095 0.81 +0.6
2,757,949 - OH686_13095 0.81 +1.0
2,757,949 - OH686_13095 0.81 +0.5
2,757,949 - OH686_13095 0.81 -0.0
2,757,949 - OH686_13095 0.81 -1.8
2,757,949 - OH686_13095 0.81 +0.4
2,757,949 - OH686_13095 0.81 +1.7
2,757,949 - OH686_13095 0.81 -0.2
2,757,949 - OH686_13095 0.81 +0.6
2,757,949 - OH686_13095 0.81 -0.4
2,757,949 - OH686_13095 0.81 +1.0
2,757,949 - OH686_13095 0.81 +0.5
2,757,949 - OH686_13095 0.81 +0.1
2,757,949 - OH686_13095 0.81 +0.6
2,757,949 - OH686_13095 0.81 -0.4
2,758,301 + OH686_13100 0.48 -0.3
2,758,301 + OH686_13100 0.48 +0.5
2,758,302 - OH686_13100 0.48 -0.3
2,758,302 - OH686_13100 0.48 +1.0
2,758,302 - OH686_13100 0.48 +1.5
2,758,302 - OH686_13100 0.48 +1.0
2,758,302 - OH686_13100 0.48 +0.7
2,758,302 - OH686_13100 0.48 +0.1
2,758,485 - +0.6
2,758,650 + OH686_13105 0.14 -0.5
2,758,650 + OH686_13105 0.14 +0.7
2,758,650 + OH686_13105 0.14 -0.7
2,758,651 - OH686_13105 0.14 +0.5
2,758,651 - OH686_13105 0.14 +1.5
2,758,651 - OH686_13105 0.14 +1.2
2,758,651 - OH686_13105 0.14 +0.8
2,758,940 + OH686_13105 0.43 +0.8
2,758,940 + OH686_13105 0.43 +1.3
2,758,940 + OH686_13105 0.43 -0.3
2,758,940 + OH686_13105 0.43 -0.0
2,758,940 + OH686_13105 0.43 +0.1
2,758,940 + OH686_13105 0.43 +0.6
2,758,940 + OH686_13105 0.43 +0.5
2,758,940 + OH686_13105 0.43 -0.2
2,758,941 - OH686_13105 0.43 -0.7
2,758,941 - OH686_13105 0.43 +1.1
2,758,941 - OH686_13105 0.43 +0.9
2,758,941 - OH686_13105 0.43 -0.8
2,758,941 - OH686_13105 0.43 +1.0
2,758,941 - OH686_13105 0.43 -0.0
2,758,941 - OH686_13105 0.43 +0.3
2,758,941 - OH686_13105 0.43 +0.7
2,759,301 - OH686_13105 0.78 +0.6

Or see this region's nucleotide sequence