Strain Fitness in Pseudomonas sp. S08-1 around OH686_12670

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_12660 and OH686_12665 overlap by 1 nucleotidesOH686_12665 and OH686_12670 are separated by 12 nucleotidesOH686_12670 and OH686_12675 are separated by 170 nucleotides OH686_12660: OH686_12660 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 2,661,698 to 2,663,590 _12660 OH686_12665: OH686_12665 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 2,663,590 to 2,664,237 _12665 OH686_12670: OH686_12670 - Chromosome (plasmid) partitioning protein ParA, at 2,664,250 to 2,665,038 _12670 OH686_12675: OH686_12675 - Chromosome (plasmid) partitioning protein ParB, at 2,665,209 to 2,665,919 _12675 Position (kb) 2664 2665 2666Strain fitness (log2 ratio) -2 -1 0 1 2at 2663.652 kb on - strandat 2663.689 kb on + strand, within OH686_12665at 2663.722 kb on + strand, within OH686_12665at 2663.722 kb on + strand, within OH686_12665at 2663.722 kb on + strand, within OH686_12665at 2663.722 kb on + strand, within OH686_12665at 2663.722 kb on + strand, within OH686_12665at 2663.722 kb on + strand, within OH686_12665at 2663.723 kb on - strand, within OH686_12665at 2663.723 kb on - strand, within OH686_12665at 2663.723 kb on - strand, within OH686_12665at 2663.723 kb on - strand, within OH686_12665at 2663.723 kb on - strand, within OH686_12665at 2663.858 kb on + strand, within OH686_12665at 2663.858 kb on + strand, within OH686_12665at 2663.859 kb on - strand, within OH686_12665at 2664.218 kb on + strandat 2664.219 kb on - strandat 2664.235 kb on + strandat 2664.874 kb on + strand, within OH686_12670at 2665.037 kb on - strandat 2665.191 kb on + strandat 2665.192 kb on - strandat 2665.192 kb on - strandat 2665.814 kb on - strand, within OH686_12675at 2665.814 kb on - strand, within OH686_12675at 2665.872 kb on + strandat 2665.873 kb on - strandat 2665.942 kb on + strandat 2665.942 kb on + strandat 2665.942 kb on + strandat 2665.943 kb on - strandat 2665.943 kb on - strandat 2665.943 kb on - strandat 2665.996 kb on + strandat 2665.998 kb on + strandat 2665.998 kb on + strandat 2665.998 kb on + strandat 2666.027 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,663,652 - -0.5
2,663,689 + OH686_12665 0.15 -0.5
2,663,722 + OH686_12665 0.20 +1.3
2,663,722 + OH686_12665 0.20 -0.8
2,663,722 + OH686_12665 0.20 +2.5
2,663,722 + OH686_12665 0.20 +0.5
2,663,722 + OH686_12665 0.20 -0.5
2,663,722 + OH686_12665 0.20 -0.5
2,663,723 - OH686_12665 0.21 +0.5
2,663,723 - OH686_12665 0.21 -0.6
2,663,723 - OH686_12665 0.21 +2.0
2,663,723 - OH686_12665 0.21 -1.1
2,663,723 - OH686_12665 0.21 +1.0
2,663,858 + OH686_12665 0.41 -0.7
2,663,858 + OH686_12665 0.41 -2.3
2,663,859 - OH686_12665 0.42 +1.0
2,664,218 + +0.8
2,664,219 - +0.0
2,664,235 + -0.5
2,664,874 + OH686_12670 0.79 +0.0
2,665,037 - -0.3
2,665,191 + -0.5
2,665,192 - -0.8
2,665,192 - -0.8
2,665,814 - OH686_12675 0.85 +0.0
2,665,814 - OH686_12675 0.85 -1.1
2,665,872 + -0.8
2,665,873 - +1.0
2,665,942 + +0.2
2,665,942 + +0.6
2,665,942 + -0.2
2,665,943 - +0.4
2,665,943 - -0.8
2,665,943 - +0.5
2,665,996 + -0.2
2,665,998 + -0.0
2,665,998 + -0.3
2,665,998 + +1.6
2,666,027 + -0.1

Or see this region's nucleotide sequence