Strain Fitness in Pseudomonas sp. S08-1 around OH686_12330

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_12325 and OH686_12330 are separated by 188 nucleotidesOH686_12330 and OH686_12335 overlap by 105 nucleotidesOH686_12335 and OH686_12340 are separated by 46 nucleotides OH686_12325: OH686_12325 - cytochrome c oxidase, subunit II, at 2,601,491 to 2,602,591 _12325 OH686_12330: OH686_12330 - hypothetical protein' product='hypothetical protein, at 2,602,780 to 2,603,094 _12330 OH686_12335: OH686_12335 - hypothetical protein, at 2,602,990 to 2,603,631 _12335 OH686_12340: OH686_12340 - Carbonic anhydrase, beta class , at 2,603,678 to 2,604,403 _12340 Position (kb) 2602 2603 2604Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2601.957 kb on + strand, within OH686_12325at 2601.957 kb on + strand, within OH686_12325at 2601.958 kb on - strand, within OH686_12325at 2601.958 kb on - strand, within OH686_12325at 2601.958 kb on - strand, within OH686_12325at 2602.131 kb on + strand, within OH686_12325at 2602.131 kb on + strand, within OH686_12325at 2602.131 kb on + strand, within OH686_12325at 2602.132 kb on - strand, within OH686_12325at 2602.132 kb on - strand, within OH686_12325at 2602.132 kb on - strand, within OH686_12325at 2602.132 kb on - strand, within OH686_12325at 2602.132 kb on - strand, within OH686_12325at 2602.132 kb on - strand, within OH686_12325at 2602.158 kb on + strand, within OH686_12325at 2602.158 kb on + strand, within OH686_12325at 2602.158 kb on + strand, within OH686_12325at 2602.158 kb on + strand, within OH686_12325at 2602.158 kb on + strand, within OH686_12325at 2602.158 kb on + strand, within OH686_12325at 2602.158 kb on + strand, within OH686_12325at 2602.158 kb on + strand, within OH686_12325at 2602.158 kb on + strand, within OH686_12325at 2602.159 kb on - strand, within OH686_12325at 2602.159 kb on - strand, within OH686_12325at 2602.159 kb on - strand, within OH686_12325at 2602.159 kb on - strand, within OH686_12325at 2602.159 kb on - strand, within OH686_12325at 2602.159 kb on - strand, within OH686_12325at 2602.159 kb on - strand, within OH686_12325at 2602.215 kb on + strand, within OH686_12325at 2602.215 kb on + strand, within OH686_12325at 2602.215 kb on + strand, within OH686_12325at 2602.215 kb on + strand, within OH686_12325at 2602.215 kb on + strand, within OH686_12325at 2602.215 kb on + strand, within OH686_12325at 2602.215 kb on + strand, within OH686_12325at 2602.215 kb on + strand, within OH686_12325at 2602.215 kb on + strand, within OH686_12325at 2602.216 kb on - strand, within OH686_12325at 2602.216 kb on - strand, within OH686_12325at 2602.216 kb on - strand, within OH686_12325at 2602.216 kb on - strand, within OH686_12325at 2602.216 kb on - strand, within OH686_12325at 2602.216 kb on - strand, within OH686_12325at 2602.216 kb on - strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.221 kb on + strand, within OH686_12325at 2602.222 kb on - strand, within OH686_12325at 2602.222 kb on - strand, within OH686_12325at 2602.222 kb on - strand, within OH686_12325at 2602.222 kb on - strand, within OH686_12325at 2602.222 kb on - strand, within OH686_12325at 2602.222 kb on - strand, within OH686_12325at 2602.222 kb on - strand, within OH686_12325at 2602.222 kb on - strand, within OH686_12325at 2602.222 kb on - strand, within OH686_12325at 2602.222 kb on - strand, within OH686_12325at 2602.281 kb on + strand, within OH686_12325at 2602.281 kb on + strand, within OH686_12325at 2602.281 kb on + strand, within OH686_12325at 2602.281 kb on + strand, within OH686_12325at 2602.281 kb on + strand, within OH686_12325at 2602.281 kb on + strand, within OH686_12325at 2602.281 kb on + strand, within OH686_12325at 2602.281 kb on + strand, within OH686_12325at 2602.281 kb on + strand, within OH686_12325at 2602.281 kb on + strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.282 kb on - strand, within OH686_12325at 2602.361 kb on + strand, within OH686_12325at 2602.361 kb on + strand, within OH686_12325at 2602.362 kb on - strand, within OH686_12325at 2602.362 kb on - strand, within OH686_12325at 2602.362 kb on - strand, within OH686_12325at 2602.534 kb on + strandat 2602.534 kb on + strandat 2602.534 kb on + strandat 2602.534 kb on + strandat 2602.534 kb on + strandat 2602.534 kb on + strandat 2602.534 kb on + strandat 2602.534 kb on + strandat 2602.534 kb on + strandat 2602.534 kb on + strandat 2602.534 kb on + strandat 2602.535 kb on - strandat 2602.535 kb on - strandat 2602.535 kb on - strandat 2602.535 kb on - strandat 2602.535 kb on - strandat 2602.535 kb on - strandat 2602.535 kb on - strandat 2602.535 kb on - strandat 2602.535 kb on - strandat 2602.642 kb on - strandat 2602.653 kb on + strandat 2602.654 kb on - strandat 2602.693 kb on + strandat 2602.693 kb on + strandat 2602.693 kb on + strandat 2602.693 kb on + strandat 2602.693 kb on + strandat 2602.693 kb on + strandat 2602.694 kb on - strandat 2602.696 kb on + strandat 2602.696 kb on + strandat 2602.696 kb on + strandat 2602.697 kb on - strandat 2602.697 kb on - strandat 2602.697 kb on - strandat 2602.697 kb on - strandat 2602.697 kb on - strandat 2602.697 kb on - strandat 2602.697 kb on - strandat 2602.697 kb on - strandat 2602.697 kb on - strandat 2602.697 kb on - strandat 2602.763 kb on + strandat 2602.763 kb on + strandat 2602.763 kb on + strandat 2602.763 kb on + strandat 2602.763 kb on + strandat 2602.763 kb on + strandat 2602.764 kb on - strandat 2602.766 kb on - strandat 2602.803 kb on + strandat 2602.804 kb on - strandat 2602.942 kb on + strand, within OH686_12330at 2602.943 kb on - strand, within OH686_12330at 2602.943 kb on - strand, within OH686_12330at 2602.995 kb on + strandat 2602.995 kb on + strandat 2602.996 kb on - strandat 2602.996 kb on - strandat 2603.155 kb on + strand, within OH686_12335at 2603.155 kb on + strand, within OH686_12335at 2603.155 kb on + strand, within OH686_12335at 2603.155 kb on + strand, within OH686_12335at 2603.155 kb on + strand, within OH686_12335at 2603.155 kb on + strand, within OH686_12335at 2603.156 kb on - strand, within OH686_12335at 2603.323 kb on + strand, within OH686_12335at 2603.323 kb on + strand, within OH686_12335at 2603.324 kb on - strand, within OH686_12335at 2603.324 kb on - strand, within OH686_12335at 2603.324 kb on - strand, within OH686_12335at 2603.362 kb on + strand, within OH686_12335at 2603.362 kb on + strand, within OH686_12335at 2603.362 kb on + strand, within OH686_12335at 2603.363 kb on - strand, within OH686_12335at 2603.363 kb on - strand, within OH686_12335at 2603.363 kb on - strand, within OH686_12335at 2603.363 kb on - strand, within OH686_12335at 2603.363 kb on - strand, within OH686_12335at 2603.363 kb on - strand, within OH686_12335at 2603.533 kb on + strand, within OH686_12335at 2603.793 kb on + strand, within OH686_12340

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,601,957 + OH686_12325 0.42 +0.1
2,601,957 + OH686_12325 0.42 +0.2
2,601,958 - OH686_12325 0.42 +0.4
2,601,958 - OH686_12325 0.42 +0.3
2,601,958 - OH686_12325 0.42 -0.1
2,602,131 + OH686_12325 0.58 +0.4
2,602,131 + OH686_12325 0.58 -0.6
2,602,131 + OH686_12325 0.58 -0.3
2,602,132 - OH686_12325 0.58 -0.3
2,602,132 - OH686_12325 0.58 +0.9
2,602,132 - OH686_12325 0.58 -0.2
2,602,132 - OH686_12325 0.58 -0.2
2,602,132 - OH686_12325 0.58 +0.5
2,602,132 - OH686_12325 0.58 -0.4
2,602,158 + OH686_12325 0.61 -0.8
2,602,158 + OH686_12325 0.61 +0.2
2,602,158 + OH686_12325 0.61 +0.7
2,602,158 + OH686_12325 0.61 -1.3
2,602,158 + OH686_12325 0.61 +0.0
2,602,158 + OH686_12325 0.61 -0.7
2,602,158 + OH686_12325 0.61 +0.3
2,602,158 + OH686_12325 0.61 -0.1
2,602,158 + OH686_12325 0.61 -0.1
2,602,159 - OH686_12325 0.61 +0.1
2,602,159 - OH686_12325 0.61 -1.7
2,602,159 - OH686_12325 0.61 +0.0
2,602,159 - OH686_12325 0.61 +0.6
2,602,159 - OH686_12325 0.61 -2.5
2,602,159 - OH686_12325 0.61 -0.3
2,602,159 - OH686_12325 0.61 +2.0
2,602,215 + OH686_12325 0.66 -0.5
2,602,215 + OH686_12325 0.66 -0.8
2,602,215 + OH686_12325 0.66 +1.0
2,602,215 + OH686_12325 0.66 -1.6
2,602,215 + OH686_12325 0.66 -0.6
2,602,215 + OH686_12325 0.66 -0.3
2,602,215 + OH686_12325 0.66 -0.3
2,602,215 + OH686_12325 0.66 +0.3
2,602,215 + OH686_12325 0.66 +0.5
2,602,216 - OH686_12325 0.66 -0.1
2,602,216 - OH686_12325 0.66 +0.3
2,602,216 - OH686_12325 0.66 -0.2
2,602,216 - OH686_12325 0.66 -0.6
2,602,216 - OH686_12325 0.66 +0.4
2,602,216 - OH686_12325 0.66 +0.7
2,602,216 - OH686_12325 0.66 +0.8
2,602,221 + OH686_12325 0.66 +0.0
2,602,221 + OH686_12325 0.66 -0.8
2,602,221 + OH686_12325 0.66 +0.1
2,602,221 + OH686_12325 0.66 +0.4
2,602,221 + OH686_12325 0.66 -1.0
2,602,221 + OH686_12325 0.66 -0.4
2,602,221 + OH686_12325 0.66 -0.2
2,602,221 + OH686_12325 0.66 +0.2
2,602,221 + OH686_12325 0.66 -0.1
2,602,221 + OH686_12325 0.66 -0.8
2,602,221 + OH686_12325 0.66 -0.8
2,602,221 + OH686_12325 0.66 +0.0
2,602,221 + OH686_12325 0.66 -0.2
2,602,221 + OH686_12325 0.66 -1.3
2,602,221 + OH686_12325 0.66 -0.6
2,602,221 + OH686_12325 0.66 +0.0
2,602,222 - OH686_12325 0.66 -0.8
2,602,222 - OH686_12325 0.66 -0.1
2,602,222 - OH686_12325 0.66 -0.8
2,602,222 - OH686_12325 0.66 -0.2
2,602,222 - OH686_12325 0.66 +1.2
2,602,222 - OH686_12325 0.66 +0.3
2,602,222 - OH686_12325 0.66 -0.1
2,602,222 - OH686_12325 0.66 -0.1
2,602,222 - OH686_12325 0.66 +0.1
2,602,222 - OH686_12325 0.66 -0.4
2,602,281 + OH686_12325 0.72 +0.2
2,602,281 + OH686_12325 0.72 -0.8
2,602,281 + OH686_12325 0.72 -0.1
2,602,281 + OH686_12325 0.72 +0.9
2,602,281 + OH686_12325 0.72 +0.3
2,602,281 + OH686_12325 0.72 -0.3
2,602,281 + OH686_12325 0.72 -0.7
2,602,281 + OH686_12325 0.72 +0.9
2,602,281 + OH686_12325 0.72 +0.9
2,602,281 + OH686_12325 0.72 +0.6
2,602,282 - OH686_12325 0.72 -0.0
2,602,282 - OH686_12325 0.72 -0.6
2,602,282 - OH686_12325 0.72 -2.4
2,602,282 - OH686_12325 0.72 -0.4
2,602,282 - OH686_12325 0.72 +0.0
2,602,282 - OH686_12325 0.72 -0.3
2,602,282 - OH686_12325 0.72 -1.6
2,602,282 - OH686_12325 0.72 -0.4
2,602,282 - OH686_12325 0.72 +0.3
2,602,282 - OH686_12325 0.72 +0.6
2,602,282 - OH686_12325 0.72 +0.0
2,602,282 - OH686_12325 0.72 -0.7
2,602,282 - OH686_12325 0.72 +0.6
2,602,361 + OH686_12325 0.79 -1.1
2,602,361 + OH686_12325 0.79 -1.5
2,602,362 - OH686_12325 0.79 -0.9
2,602,362 - OH686_12325 0.79 -0.3
2,602,362 - OH686_12325 0.79 +0.7
2,602,534 + +0.4
2,602,534 + -1.0
2,602,534 + -1.0
2,602,534 + +0.0
2,602,534 + -1.1
2,602,534 + -0.2
2,602,534 + -0.1
2,602,534 + +0.8
2,602,534 + -1.3
2,602,534 + -0.4
2,602,534 + -0.0
2,602,535 - -3.0
2,602,535 - +0.7
2,602,535 - -0.4
2,602,535 - +0.4
2,602,535 - -0.2
2,602,535 - -0.3
2,602,535 - -0.3
2,602,535 - +0.6
2,602,535 - -0.3
2,602,642 - -0.8
2,602,653 + +0.1
2,602,654 - -0.3
2,602,693 + +0.2
2,602,693 + -0.0
2,602,693 + +1.1
2,602,693 + -0.1
2,602,693 + -0.3
2,602,693 + -0.0
2,602,694 - -0.6
2,602,696 + +0.1
2,602,696 + -0.4
2,602,696 + +0.0
2,602,697 - -2.1
2,602,697 - +0.6
2,602,697 - -0.2
2,602,697 - -0.4
2,602,697 - +0.9
2,602,697 - -1.2
2,602,697 - -0.5
2,602,697 - +0.1
2,602,697 - +0.3
2,602,697 - +0.8
2,602,763 + +0.4
2,602,763 + +0.6
2,602,763 + +0.3
2,602,763 + +0.6
2,602,763 + +1.3
2,602,763 + -0.4
2,602,764 - -1.1
2,602,766 - +0.1
2,602,803 + -0.2
2,602,804 - -0.6
2,602,942 + OH686_12330 0.51 +1.6
2,602,943 - OH686_12330 0.52 +1.0
2,602,943 - OH686_12330 0.52 -0.2
2,602,995 + -0.3
2,602,995 + -0.3
2,602,996 - -1.1
2,602,996 - -1.7
2,603,155 + OH686_12335 0.26 +0.1
2,603,155 + OH686_12335 0.26 -0.6
2,603,155 + OH686_12335 0.26 -0.0
2,603,155 + OH686_12335 0.26 -0.2
2,603,155 + OH686_12335 0.26 +0.2
2,603,155 + OH686_12335 0.26 -2.3
2,603,156 - OH686_12335 0.26 -0.8
2,603,323 + OH686_12335 0.52 -0.3
2,603,323 + OH686_12335 0.52 +0.6
2,603,324 - OH686_12335 0.52 +0.9
2,603,324 - OH686_12335 0.52 +0.2
2,603,324 - OH686_12335 0.52 -1.0
2,603,362 + OH686_12335 0.58 -0.9
2,603,362 + OH686_12335 0.58 +0.2
2,603,362 + OH686_12335 0.58 -1.2
2,603,363 - OH686_12335 0.58 -0.6
2,603,363 - OH686_12335 0.58 -0.9
2,603,363 - OH686_12335 0.58 -0.4
2,603,363 - OH686_12335 0.58 -0.9
2,603,363 - OH686_12335 0.58 -0.8
2,603,363 - OH686_12335 0.58 -0.4
2,603,533 + OH686_12335 0.85 -1.1
2,603,793 + OH686_12340 0.16 +0.0

Or see this region's nucleotide sequence