Strain Fitness in Pseudomonas sp. S08-1 around OH686_12050

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_12040 and OH686_12045 are separated by 8 nucleotidesOH686_12045 and OH686_12050 are separated by 32 nucleotidesOH686_12050 and OH686_12055 overlap by 98 nucleotides OH686_12040: OH686_12040 - hypothetical protein, at 2,540,264 to 2,542,228 _12040 OH686_12045: OH686_12045 - Gfa-like protein, at 2,542,237 to 2,542,638 _12045 OH686_12050: OH686_12050 - hypothetical protein' product='hypothetical protein, at 2,542,671 to 2,542,931 _12050 OH686_12055: OH686_12055 - Citrate/H+ symporter of CitMHS family, at 2,542,834 to 2,544,138 _12055 Position (kb) 2542 2543Strain fitness (log2 ratio) -2 -1 0 1 2at 2541.819 kb on + strand, within OH686_12040at 2541.819 kb on + strand, within OH686_12040at 2541.887 kb on + strand, within OH686_12040at 2542.227 kb on - strandat 2542.239 kb on - strandat 2542.239 kb on - strandat 2542.239 kb on - strandat 2542.239 kb on - strandat 2542.311 kb on + strand, within OH686_12045at 2542.311 kb on + strand, within OH686_12045at 2542.311 kb on + strand, within OH686_12045at 2542.311 kb on + strand, within OH686_12045at 2542.312 kb on - strand, within OH686_12045at 2542.312 kb on - strand, within OH686_12045at 2542.312 kb on - strand, within OH686_12045at 2542.312 kb on - strand, within OH686_12045at 2542.312 kb on - strand, within OH686_12045at 2542.312 kb on - strand, within OH686_12045at 2542.312 kb on - strand, within OH686_12045at 2542.312 kb on - strand, within OH686_12045at 2542.427 kb on + strand, within OH686_12045at 2542.427 kb on + strand, within OH686_12045at 2542.427 kb on + strand, within OH686_12045at 2542.427 kb on + strand, within OH686_12045at 2542.428 kb on - strand, within OH686_12045at 2542.428 kb on - strand, within OH686_12045at 2542.428 kb on - strand, within OH686_12045at 2542.428 kb on - strand, within OH686_12045at 2542.428 kb on - strand, within OH686_12045at 2542.454 kb on + strand, within OH686_12045at 2542.454 kb on + strand, within OH686_12045at 2542.454 kb on + strand, within OH686_12045at 2542.455 kb on - strand, within OH686_12045at 2542.455 kb on - strand, within OH686_12045at 2542.455 kb on - strand, within OH686_12045at 2542.455 kb on - strand, within OH686_12045at 2542.455 kb on - strand, within OH686_12045at 2542.455 kb on - strand, within OH686_12045at 2542.455 kb on - strand, within OH686_12045at 2542.519 kb on + strand, within OH686_12045at 2542.519 kb on + strand, within OH686_12045at 2542.519 kb on + strand, within OH686_12045at 2542.519 kb on + strand, within OH686_12045at 2542.519 kb on + strand, within OH686_12045at 2542.519 kb on + strand, within OH686_12045at 2542.519 kb on + strand, within OH686_12045at 2542.519 kb on + strand, within OH686_12045at 2542.520 kb on - strand, within OH686_12045at 2542.520 kb on - strand, within OH686_12045at 2542.593 kb on - strand, within OH686_12045at 2542.672 kb on + strandat 2542.672 kb on + strandat 2542.672 kb on + strandat 2542.673 kb on - strandat 2542.673 kb on - strandat 2542.673 kb on - strandat 2542.673 kb on - strandat 2542.707 kb on + strand, within OH686_12050at 2542.708 kb on - strand, within OH686_12050at 2542.708 kb on - strand, within OH686_12050at 2542.829 kb on + strand, within OH686_12050at 2542.829 kb on + strand, within OH686_12050at 2542.829 kb on + strand, within OH686_12050at 2542.829 kb on + strand, within OH686_12050at 2542.829 kb on + strand, within OH686_12050at 2542.830 kb on - strand, within OH686_12050at 2542.830 kb on - strand, within OH686_12050at 2542.830 kb on - strand, within OH686_12050at 2542.830 kb on - strand, within OH686_12050at 2542.830 kb on - strand, within OH686_12050at 2542.876 kb on + strandat 2542.876 kb on + strandat 2542.876 kb on + strandat 2542.876 kb on + strandat 2542.876 kb on + strandat 2542.876 kb on + strandat 2542.877 kb on - strandat 2542.877 kb on - strandat 2542.877 kb on - strandat 2542.877 kb on - strandat 2542.877 kb on - strandat 2542.877 kb on - strandat 2542.877 kb on - strandat 2542.877 kb on - strandat 2542.877 kb on - strandat 2542.877 kb on - strandat 2542.877 kb on - strandat 2543.038 kb on + strand, within OH686_12055at 2543.038 kb on + strand, within OH686_12055at 2543.038 kb on + strand, within OH686_12055at 2543.038 kb on + strand, within OH686_12055at 2543.038 kb on + strand, within OH686_12055at 2543.038 kb on + strand, within OH686_12055at 2543.038 kb on + strand, within OH686_12055at 2543.038 kb on + strand, within OH686_12055at 2543.038 kb on + strand, within OH686_12055at 2543.039 kb on - strand, within OH686_12055at 2543.039 kb on - strand, within OH686_12055at 2543.039 kb on - strand, within OH686_12055at 2543.039 kb on - strand, within OH686_12055at 2543.039 kb on - strand, within OH686_12055at 2543.039 kb on - strand, within OH686_12055at 2543.039 kb on - strand, within OH686_12055at 2543.039 kb on - strand, within OH686_12055at 2543.039 kb on - strand, within OH686_12055at 2543.039 kb on - strand, within OH686_12055at 2543.039 kb on - strand, within OH686_12055at 2543.123 kb on + strand, within OH686_12055at 2543.123 kb on + strand, within OH686_12055at 2543.123 kb on + strand, within OH686_12055at 2543.123 kb on + strand, within OH686_12055at 2543.124 kb on - strand, within OH686_12055at 2543.124 kb on - strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.185 kb on + strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.186 kb on - strand, within OH686_12055at 2543.218 kb on + strand, within OH686_12055at 2543.218 kb on + strand, within OH686_12055at 2543.218 kb on + strand, within OH686_12055at 2543.218 kb on + strand, within OH686_12055at 2543.218 kb on + strand, within OH686_12055at 2543.218 kb on + strand, within OH686_12055at 2543.219 kb on - strand, within OH686_12055at 2543.219 kb on - strand, within OH686_12055at 2543.219 kb on - strand, within OH686_12055at 2543.219 kb on - strand, within OH686_12055at 2543.416 kb on + strand, within OH686_12055at 2543.416 kb on + strand, within OH686_12055at 2543.416 kb on + strand, within OH686_12055at 2543.501 kb on - strand, within OH686_12055at 2543.638 kb on + strand, within OH686_12055at 2543.638 kb on + strand, within OH686_12055at 2543.638 kb on + strand, within OH686_12055at 2543.638 kb on + strand, within OH686_12055at 2543.638 kb on + strand, within OH686_12055at 2543.638 kb on + strand, within OH686_12055at 2543.639 kb on - strand, within OH686_12055at 2543.639 kb on - strand, within OH686_12055at 2543.639 kb on - strand, within OH686_12055at 2543.639 kb on - strand, within OH686_12055at 2543.639 kb on - strand, within OH686_12055at 2543.639 kb on - strand, within OH686_12055at 2543.812 kb on + strand, within OH686_12055at 2543.812 kb on + strand, within OH686_12055at 2543.812 kb on + strand, within OH686_12055at 2543.812 kb on + strand, within OH686_12055at 2543.813 kb on - strand, within OH686_12055at 2543.813 kb on - strand, within OH686_12055at 2543.813 kb on - strand, within OH686_12055at 2543.813 kb on - strand, within OH686_12055at 2543.878 kb on + strand, within OH686_12055at 2543.878 kb on + strand, within OH686_12055at 2543.878 kb on + strand, within OH686_12055at 2543.878 kb on + strand, within OH686_12055at 2543.878 kb on + strand, within OH686_12055at 2543.878 kb on + strand, within OH686_12055at 2543.879 kb on - strand, within OH686_12055at 2543.879 kb on - strand, within OH686_12055at 2543.879 kb on - strand, within OH686_12055at 2543.879 kb on - strand, within OH686_12055at 2543.879 kb on - strand, within OH686_12055at 2543.879 kb on - strand, within OH686_12055at 2543.879 kb on - strand, within OH686_12055at 2543.881 kb on + strand, within OH686_12055at 2543.881 kb on + strand, within OH686_12055at 2543.881 kb on + strand, within OH686_12055at 2543.882 kb on - strand, within OH686_12055at 2543.882 kb on - strand, within OH686_12055at 2543.882 kb on - strand, within OH686_12055at 2543.882 kb on - strand, within OH686_12055

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,541,819 + OH686_12040 0.79 +0.5
2,541,819 + OH686_12040 0.79 -1.0
2,541,887 + OH686_12040 0.83 -1.1
2,542,227 - +1.1
2,542,239 - +0.1
2,542,239 - +0.9
2,542,239 - -0.2
2,542,239 - -0.4
2,542,311 + OH686_12045 0.18 -0.2
2,542,311 + OH686_12045 0.18 +0.3
2,542,311 + OH686_12045 0.18 -0.1
2,542,311 + OH686_12045 0.18 -0.9
2,542,312 - OH686_12045 0.19 -0.3
2,542,312 - OH686_12045 0.19 -1.0
2,542,312 - OH686_12045 0.19 +0.0
2,542,312 - OH686_12045 0.19 +0.2
2,542,312 - OH686_12045 0.19 +0.0
2,542,312 - OH686_12045 0.19 +0.4
2,542,312 - OH686_12045 0.19 -0.9
2,542,312 - OH686_12045 0.19 +0.3
2,542,427 + OH686_12045 0.47 -0.4
2,542,427 + OH686_12045 0.47 -0.1
2,542,427 + OH686_12045 0.47 -0.6
2,542,427 + OH686_12045 0.47 -0.5
2,542,428 - OH686_12045 0.48 -0.3
2,542,428 - OH686_12045 0.48 -1.8
2,542,428 - OH686_12045 0.48 +0.0
2,542,428 - OH686_12045 0.48 +1.1
2,542,428 - OH686_12045 0.48 +0.4
2,542,454 + OH686_12045 0.54 +0.7
2,542,454 + OH686_12045 0.54 +0.1
2,542,454 + OH686_12045 0.54 +0.2
2,542,455 - OH686_12045 0.54 -0.4
2,542,455 - OH686_12045 0.54 -0.1
2,542,455 - OH686_12045 0.54 +1.0
2,542,455 - OH686_12045 0.54 +0.2
2,542,455 - OH686_12045 0.54 -0.2
2,542,455 - OH686_12045 0.54 +0.6
2,542,455 - OH686_12045 0.54 -1.2
2,542,519 + OH686_12045 0.70 -2.1
2,542,519 + OH686_12045 0.70 -0.6
2,542,519 + OH686_12045 0.70 -0.3
2,542,519 + OH686_12045 0.70 +0.3
2,542,519 + OH686_12045 0.70 -0.6
2,542,519 + OH686_12045 0.70 +1.2
2,542,519 + OH686_12045 0.70 +0.1
2,542,519 + OH686_12045 0.70 -0.2
2,542,520 - OH686_12045 0.70 +1.4
2,542,520 - OH686_12045 0.70 +0.1
2,542,593 - OH686_12045 0.89 -0.4
2,542,672 + -0.4
2,542,672 + +0.8
2,542,672 + +0.5
2,542,673 - -0.0
2,542,673 - +0.9
2,542,673 - -0.0
2,542,673 - -0.1
2,542,707 + OH686_12050 0.14 +0.0
2,542,708 - OH686_12050 0.14 -1.2
2,542,708 - OH686_12050 0.14 +0.7
2,542,829 + OH686_12050 0.61 +0.6
2,542,829 + OH686_12050 0.61 +1.6
2,542,829 + OH686_12050 0.61 -2.1
2,542,829 + OH686_12050 0.61 +0.8
2,542,829 + OH686_12050 0.61 -0.9
2,542,830 - OH686_12050 0.61 +0.3
2,542,830 - OH686_12050 0.61 +0.2
2,542,830 - OH686_12050 0.61 +1.5
2,542,830 - OH686_12050 0.61 +1.2
2,542,830 - OH686_12050 0.61 +1.1
2,542,876 + +0.1
2,542,876 + -0.8
2,542,876 + -0.5
2,542,876 + +0.6
2,542,876 + +0.0
2,542,876 + +0.2
2,542,877 - -0.2
2,542,877 - -0.2
2,542,877 - +0.2
2,542,877 - +0.7
2,542,877 - -1.2
2,542,877 - -1.2
2,542,877 - -0.5
2,542,877 - -2.4
2,542,877 - -1.1
2,542,877 - -0.1
2,542,877 - -0.1
2,543,038 + OH686_12055 0.16 -0.9
2,543,038 + OH686_12055 0.16 -0.0
2,543,038 + OH686_12055 0.16 -0.1
2,543,038 + OH686_12055 0.16 -0.9
2,543,038 + OH686_12055 0.16 -0.6
2,543,038 + OH686_12055 0.16 +0.2
2,543,038 + OH686_12055 0.16 +0.2
2,543,038 + OH686_12055 0.16 +0.3
2,543,038 + OH686_12055 0.16 +0.3
2,543,039 - OH686_12055 0.16 +0.6
2,543,039 - OH686_12055 0.16 +0.7
2,543,039 - OH686_12055 0.16 -0.7
2,543,039 - OH686_12055 0.16 -0.6
2,543,039 - OH686_12055 0.16 +0.6
2,543,039 - OH686_12055 0.16 -1.4
2,543,039 - OH686_12055 0.16 +0.5
2,543,039 - OH686_12055 0.16 -0.1
2,543,039 - OH686_12055 0.16 +0.7
2,543,039 - OH686_12055 0.16 -0.7
2,543,039 - OH686_12055 0.16 +0.0
2,543,123 + OH686_12055 0.22 +0.2
2,543,123 + OH686_12055 0.22 -1.4
2,543,123 + OH686_12055 0.22 +0.2
2,543,123 + OH686_12055 0.22 -1.4
2,543,124 - OH686_12055 0.22 -1.1
2,543,124 - OH686_12055 0.22 +0.3
2,543,185 + OH686_12055 0.27 +0.5
2,543,185 + OH686_12055 0.27 +0.2
2,543,185 + OH686_12055 0.27 +0.8
2,543,185 + OH686_12055 0.27 +0.2
2,543,185 + OH686_12055 0.27 -0.3
2,543,185 + OH686_12055 0.27 +0.7
2,543,185 + OH686_12055 0.27 +0.3
2,543,185 + OH686_12055 0.27 +0.3
2,543,185 + OH686_12055 0.27 +0.5
2,543,185 + OH686_12055 0.27 -0.3
2,543,185 + OH686_12055 0.27 -0.1
2,543,185 + OH686_12055 0.27 -0.8
2,543,185 + OH686_12055 0.27 -0.1
2,543,185 + OH686_12055 0.27 +0.3
2,543,185 + OH686_12055 0.27 +1.0
2,543,185 + OH686_12055 0.27 +0.8
2,543,185 + OH686_12055 0.27 +0.3
2,543,185 + OH686_12055 0.27 -0.2
2,543,185 + OH686_12055 0.27 +1.0
2,543,185 + OH686_12055 0.27 +0.2
2,543,186 - OH686_12055 0.27 -1.1
2,543,186 - OH686_12055 0.27 +1.2
2,543,186 - OH686_12055 0.27 -0.0
2,543,186 - OH686_12055 0.27 -0.9
2,543,186 - OH686_12055 0.27 +0.4
2,543,186 - OH686_12055 0.27 -0.8
2,543,186 - OH686_12055 0.27 +0.7
2,543,186 - OH686_12055 0.27 +0.7
2,543,186 - OH686_12055 0.27 -0.0
2,543,186 - OH686_12055 0.27 -0.3
2,543,186 - OH686_12055 0.27 -0.7
2,543,186 - OH686_12055 0.27 -1.1
2,543,186 - OH686_12055 0.27 -2.0
2,543,186 - OH686_12055 0.27 +1.2
2,543,186 - OH686_12055 0.27 +0.0
2,543,186 - OH686_12055 0.27 -0.4
2,543,186 - OH686_12055 0.27 -0.7
2,543,186 - OH686_12055 0.27 +0.2
2,543,186 - OH686_12055 0.27 +0.1
2,543,186 - OH686_12055 0.27 -0.7
2,543,186 - OH686_12055 0.27 -0.1
2,543,218 + OH686_12055 0.29 -0.5
2,543,218 + OH686_12055 0.29 -0.1
2,543,218 + OH686_12055 0.29 -0.1
2,543,218 + OH686_12055 0.29 +0.7
2,543,218 + OH686_12055 0.29 +0.7
2,543,218 + OH686_12055 0.29 +0.4
2,543,219 - OH686_12055 0.30 -1.3
2,543,219 - OH686_12055 0.30 -0.2
2,543,219 - OH686_12055 0.30 -0.1
2,543,219 - OH686_12055 0.30 -2.0
2,543,416 + OH686_12055 0.45 -1.3
2,543,416 + OH686_12055 0.45 +0.2
2,543,416 + OH686_12055 0.45 -0.5
2,543,501 - OH686_12055 0.51 -1.3
2,543,638 + OH686_12055 0.62 +0.6
2,543,638 + OH686_12055 0.62 -1.0
2,543,638 + OH686_12055 0.62 +0.4
2,543,638 + OH686_12055 0.62 +1.0
2,543,638 + OH686_12055 0.62 -0.5
2,543,638 + OH686_12055 0.62 +0.0
2,543,639 - OH686_12055 0.62 +1.4
2,543,639 - OH686_12055 0.62 -0.5
2,543,639 - OH686_12055 0.62 +0.6
2,543,639 - OH686_12055 0.62 +0.7
2,543,639 - OH686_12055 0.62 +0.0
2,543,639 - OH686_12055 0.62 +0.8
2,543,812 + OH686_12055 0.75 +0.0
2,543,812 + OH686_12055 0.75 +1.0
2,543,812 + OH686_12055 0.75 +0.4
2,543,812 + OH686_12055 0.75 -0.3
2,543,813 - OH686_12055 0.75 +0.4
2,543,813 - OH686_12055 0.75 +0.8
2,543,813 - OH686_12055 0.75 -0.8
2,543,813 - OH686_12055 0.75 -0.9
2,543,878 + OH686_12055 0.80 -0.1
2,543,878 + OH686_12055 0.80 -0.3
2,543,878 + OH686_12055 0.80 +1.2
2,543,878 + OH686_12055 0.80 +1.8
2,543,878 + OH686_12055 0.80 -0.4
2,543,878 + OH686_12055 0.80 +0.4
2,543,879 - OH686_12055 0.80 +0.4
2,543,879 - OH686_12055 0.80 -0.3
2,543,879 - OH686_12055 0.80 -1.3
2,543,879 - OH686_12055 0.80 -0.5
2,543,879 - OH686_12055 0.80 -0.6
2,543,879 - OH686_12055 0.80 -1.4
2,543,879 - OH686_12055 0.80 +0.6
2,543,881 + OH686_12055 0.80 +1.2
2,543,881 + OH686_12055 0.80 +0.9
2,543,881 + OH686_12055 0.80 +1.0
2,543,882 - OH686_12055 0.80 +0.9
2,543,882 - OH686_12055 0.80 +0.8
2,543,882 - OH686_12055 0.80 +1.4
2,543,882 - OH686_12055 0.80 -0.6

Or see this region's nucleotide sequence