Strain Fitness in Pseudomonas sp. S08-1 around OH686_11450

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_11440 and OH686_11445 are separated by 58 nucleotidesOH686_11445 and OH686_11450 overlap by 4 nucleotidesOH686_11450 and OH686_11455 overlap by 4 nucleotides OH686_11440: OH686_11440 - N-acyl-homoserine lactone acylase, at 2,356,568 to 2,358,949 _11440 OH686_11445: OH686_11445 - Putrescine transport system permease protein PotI, at 2,359,008 to 2,359,886 _11445 OH686_11450: OH686_11450 - Putrescine transport system permease protein PotH, at 2,359,883 to 2,360,791 _11450 OH686_11455: OH686_11455 - Putrescine transport ATP-binding protein PotG, at 2,360,788 to 2,361,942 _11455 Position (kb) 2359 2360 2361Strain fitness (log2 ratio) -2 -1 0 1 2at 2359.158 kb on + strand, within OH686_11445at 2359.158 kb on + strand, within OH686_11445at 2359.158 kb on + strand, within OH686_11445at 2359.158 kb on + strand, within OH686_11445at 2359.158 kb on + strand, within OH686_11445at 2359.441 kb on + strand, within OH686_11445at 2359.441 kb on + strand, within OH686_11445at 2359.442 kb on - strand, within OH686_11445at 2359.442 kb on - strand, within OH686_11445at 2359.681 kb on + strand, within OH686_11445at 2359.681 kb on + strand, within OH686_11445at 2359.681 kb on + strand, within OH686_11445at 2359.681 kb on + strand, within OH686_11445at 2359.681 kb on + strand, within OH686_11445at 2359.682 kb on - strand, within OH686_11445at 2359.682 kb on - strand, within OH686_11445at 2359.682 kb on - strand, within OH686_11445at 2359.747 kb on + strand, within OH686_11445at 2359.747 kb on + strand, within OH686_11445at 2359.748 kb on - strand, within OH686_11445at 2359.804 kb on + strandat 2359.804 kb on + strandat 2359.804 kb on + strandat 2359.804 kb on + strandat 2359.804 kb on + strandat 2359.804 kb on + strandat 2359.804 kb on + strandat 2359.804 kb on + strandat 2359.804 kb on + strandat 2359.805 kb on - strandat 2359.805 kb on - strandat 2359.805 kb on - strandat 2359.805 kb on - strandat 2359.805 kb on - strandat 2359.805 kb on - strandat 2359.831 kb on + strandat 2359.831 kb on + strandat 2359.831 kb on + strandat 2359.831 kb on + strandat 2359.831 kb on + strandat 2359.831 kb on + strandat 2359.831 kb on + strandat 2359.831 kb on + strandat 2359.831 kb on + strandat 2359.832 kb on - strandat 2359.832 kb on - strandat 2359.832 kb on - strandat 2359.832 kb on - strandat 2359.915 kb on + strandat 2360.226 kb on + strand, within OH686_11450at 2360.227 kb on - strand, within OH686_11450at 2360.253 kb on + strand, within OH686_11450at 2360.259 kb on + strand, within OH686_11450at 2360.259 kb on + strand, within OH686_11450at 2360.259 kb on + strand, within OH686_11450at 2360.274 kb on + strand, within OH686_11450at 2360.274 kb on + strand, within OH686_11450at 2360.274 kb on + strand, within OH686_11450at 2360.274 kb on + strand, within OH686_11450at 2360.274 kb on + strand, within OH686_11450at 2360.274 kb on + strand, within OH686_11450at 2360.275 kb on - strand, within OH686_11450at 2360.275 kb on - strand, within OH686_11450at 2360.275 kb on - strand, within OH686_11450at 2360.318 kb on + strand, within OH686_11450at 2360.382 kb on + strand, within OH686_11450at 2360.383 kb on - strand, within OH686_11450at 2360.473 kb on - strand, within OH686_11450at 2360.473 kb on - strand, within OH686_11450at 2360.541 kb on + strand, within OH686_11450at 2360.542 kb on - strand, within OH686_11450at 2360.542 kb on - strand, within OH686_11450at 2360.542 kb on - strand, within OH686_11450at 2360.553 kb on + strand, within OH686_11450at 2360.554 kb on - strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.580 kb on + strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.581 kb on - strand, within OH686_11450at 2360.588 kb on + strand, within OH686_11450at 2360.588 kb on + strand, within OH686_11450at 2360.588 kb on + strand, within OH686_11450at 2360.588 kb on + strand, within OH686_11450at 2360.588 kb on + strand, within OH686_11450at 2360.589 kb on - strand, within OH686_11450at 2360.589 kb on - strand, within OH686_11450at 2360.589 kb on - strand, within OH686_11450at 2360.628 kb on + strand, within OH686_11450at 2360.628 kb on + strand, within OH686_11450at 2360.628 kb on + strand, within OH686_11450at 2360.628 kb on + strand, within OH686_11450at 2360.628 kb on + strand, within OH686_11450at 2360.628 kb on + strand, within OH686_11450at 2360.628 kb on + strand, within OH686_11450at 2360.628 kb on + strand, within OH686_11450at 2360.628 kb on + strand, within OH686_11450at 2360.629 kb on - strand, within OH686_11450at 2360.629 kb on - strand, within OH686_11450at 2360.629 kb on - strand, within OH686_11450at 2360.629 kb on - strand, within OH686_11450at 2360.629 kb on - strand, within OH686_11450at 2360.629 kb on - strand, within OH686_11450at 2360.629 kb on - strand, within OH686_11450at 2360.629 kb on - strand, within OH686_11450at 2360.629 kb on - strand, within OH686_11450at 2360.629 kb on - strand, within OH686_11450at 2360.629 kb on - strand, within OH686_11450at 2360.640 kb on + strand, within OH686_11450at 2360.640 kb on + strand, within OH686_11450at 2360.766 kb on + strandat 2360.766 kb on + strandat 2360.766 kb on + strandat 2360.766 kb on + strandat 2360.766 kb on + strandat 2360.767 kb on - strandat 2360.767 kb on - strandat 2360.800 kb on + strandat 2360.801 kb on - strandat 2360.825 kb on + strandat 2360.825 kb on + strandat 2360.825 kb on + strandat 2360.825 kb on + strandat 2360.826 kb on - strandat 2360.924 kb on + strand, within OH686_11455at 2360.924 kb on + strand, within OH686_11455at 2360.924 kb on + strand, within OH686_11455at 2360.925 kb on - strand, within OH686_11455at 2360.925 kb on - strand, within OH686_11455at 2360.925 kb on - strand, within OH686_11455at 2360.925 kb on - strand, within OH686_11455at 2360.945 kb on + strand, within OH686_11455at 2360.946 kb on - strand, within OH686_11455at 2360.981 kb on + strand, within OH686_11455at 2360.981 kb on + strand, within OH686_11455at 2360.981 kb on + strand, within OH686_11455at 2360.981 kb on + strand, within OH686_11455at 2361.048 kb on - strand, within OH686_11455at 2361.095 kb on + strand, within OH686_11455at 2361.095 kb on + strand, within OH686_11455at 2361.095 kb on + strand, within OH686_11455at 2361.095 kb on + strand, within OH686_11455at 2361.095 kb on + strand, within OH686_11455at 2361.095 kb on + strand, within OH686_11455at 2361.096 kb on - strand, within OH686_11455at 2361.096 kb on - strand, within OH686_11455at 2361.096 kb on - strand, within OH686_11455at 2361.096 kb on - strand, within OH686_11455at 2361.096 kb on - strand, within OH686_11455at 2361.096 kb on - strand, within OH686_11455at 2361.180 kb on + strand, within OH686_11455at 2361.221 kb on + strand, within OH686_11455at 2361.221 kb on + strand, within OH686_11455at 2361.221 kb on + strand, within OH686_11455at 2361.221 kb on + strand, within OH686_11455at 2361.221 kb on + strand, within OH686_11455at 2361.221 kb on + strand, within OH686_11455at 2361.221 kb on + strand, within OH686_11455at 2361.221 kb on + strand, within OH686_11455at 2361.221 kb on + strand, within OH686_11455at 2361.222 kb on - strand, within OH686_11455at 2361.222 kb on - strand, within OH686_11455at 2361.222 kb on - strand, within OH686_11455at 2361.222 kb on - strand, within OH686_11455at 2361.222 kb on - strand, within OH686_11455at 2361.222 kb on - strand, within OH686_11455at 2361.222 kb on - strand, within OH686_11455at 2361.222 kb on - strand, within OH686_11455at 2361.222 kb on - strand, within OH686_11455at 2361.635 kb on + strand, within OH686_11455at 2361.635 kb on + strand, within OH686_11455at 2361.635 kb on + strand, within OH686_11455at 2361.635 kb on + strand, within OH686_11455at 2361.636 kb on - strand, within OH686_11455at 2361.636 kb on - strand, within OH686_11455at 2361.669 kb on - strand, within OH686_11455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
2,359,158 + OH686_11445 0.17 +0.0
2,359,158 + OH686_11445 0.17 +1.0
2,359,158 + OH686_11445 0.17 +1.6
2,359,158 + OH686_11445 0.17 +1.0
2,359,158 + OH686_11445 0.17 +1.2
2,359,441 + OH686_11445 0.49 +1.3
2,359,441 + OH686_11445 0.49 +0.8
2,359,442 - OH686_11445 0.49 +0.2
2,359,442 - OH686_11445 0.49 +0.3
2,359,681 + OH686_11445 0.77 +1.8
2,359,681 + OH686_11445 0.77 +0.3
2,359,681 + OH686_11445 0.77 +0.8
2,359,681 + OH686_11445 0.77 +1.1
2,359,681 + OH686_11445 0.77 +1.1
2,359,682 - OH686_11445 0.77 +0.1
2,359,682 - OH686_11445 0.77 +0.4
2,359,682 - OH686_11445 0.77 +2.3
2,359,747 + OH686_11445 0.84 +0.4
2,359,747 + OH686_11445 0.84 -0.1
2,359,748 - OH686_11445 0.84 -0.2
2,359,804 + +1.1
2,359,804 + +0.9
2,359,804 + +0.8
2,359,804 + +0.5
2,359,804 + +0.5
2,359,804 + +1.3
2,359,804 + +0.2
2,359,804 + -0.3
2,359,804 + +0.4
2,359,805 - +1.2
2,359,805 - +0.7
2,359,805 - -0.7
2,359,805 - -0.2
2,359,805 - +1.4
2,359,805 - -0.2
2,359,831 + +0.8
2,359,831 + +0.8
2,359,831 + +1.8
2,359,831 + +0.6
2,359,831 + +0.1
2,359,831 + +0.5
2,359,831 + +0.9
2,359,831 + +0.0
2,359,831 + +1.1
2,359,832 - +1.7
2,359,832 - +0.9
2,359,832 - +0.9
2,359,832 - -0.3
2,359,915 + +0.2
2,360,226 + OH686_11450 0.38 +0.9
2,360,227 - OH686_11450 0.38 +1.3
2,360,253 + OH686_11450 0.41 +1.3
2,360,259 + OH686_11450 0.41 +1.1
2,360,259 + OH686_11450 0.41 +0.8
2,360,259 + OH686_11450 0.41 +0.6
2,360,274 + OH686_11450 0.43 -0.1
2,360,274 + OH686_11450 0.43 +0.6
2,360,274 + OH686_11450 0.43 +0.4
2,360,274 + OH686_11450 0.43 -0.4
2,360,274 + OH686_11450 0.43 +0.5
2,360,274 + OH686_11450 0.43 +1.5
2,360,275 - OH686_11450 0.43 +0.3
2,360,275 - OH686_11450 0.43 +0.5
2,360,275 - OH686_11450 0.43 +0.7
2,360,318 + OH686_11450 0.48 -0.9
2,360,382 + OH686_11450 0.55 +0.5
2,360,383 - OH686_11450 0.55 +0.7
2,360,473 - OH686_11450 0.65 +1.9
2,360,473 - OH686_11450 0.65 +1.3
2,360,541 + OH686_11450 0.72 +1.8
2,360,542 - OH686_11450 0.72 +0.5
2,360,542 - OH686_11450 0.72 +1.1
2,360,542 - OH686_11450 0.72 +0.5
2,360,553 + OH686_11450 0.74 +0.6
2,360,554 - OH686_11450 0.74 +0.9
2,360,580 + OH686_11450 0.77 +1.3
2,360,580 + OH686_11450 0.77 +1.4
2,360,580 + OH686_11450 0.77 +0.0
2,360,580 + OH686_11450 0.77 +0.7
2,360,580 + OH686_11450 0.77 +0.9
2,360,580 + OH686_11450 0.77 +0.8
2,360,580 + OH686_11450 0.77 +0.8
2,360,580 + OH686_11450 0.77 +0.7
2,360,580 + OH686_11450 0.77 +1.3
2,360,580 + OH686_11450 0.77 +0.9
2,360,580 + OH686_11450 0.77 +0.4
2,360,580 + OH686_11450 0.77 +1.4
2,360,580 + OH686_11450 0.77 +0.7
2,360,581 - OH686_11450 0.77 +0.9
2,360,581 - OH686_11450 0.77 +0.2
2,360,581 - OH686_11450 0.77 +1.7
2,360,581 - OH686_11450 0.77 +0.5
2,360,581 - OH686_11450 0.77 +1.3
2,360,581 - OH686_11450 0.77 +1.8
2,360,581 - OH686_11450 0.77 -0.3
2,360,581 - OH686_11450 0.77 +0.8
2,360,581 - OH686_11450 0.77 +0.2
2,360,581 - OH686_11450 0.77 +0.5
2,360,581 - OH686_11450 0.77 +0.9
2,360,581 - OH686_11450 0.77 -0.6
2,360,581 - OH686_11450 0.77 +1.8
2,360,581 - OH686_11450 0.77 +0.9
2,360,581 - OH686_11450 0.77 -0.2
2,360,581 - OH686_11450 0.77 +2.2
2,360,581 - OH686_11450 0.77 +1.8
2,360,581 - OH686_11450 0.77 +0.2
2,360,588 + OH686_11450 0.78 -0.5
2,360,588 + OH686_11450 0.78 -1.3
2,360,588 + OH686_11450 0.78 +1.8
2,360,588 + OH686_11450 0.78 -0.8
2,360,588 + OH686_11450 0.78 +1.1
2,360,589 - OH686_11450 0.78 +0.2
2,360,589 - OH686_11450 0.78 +0.6
2,360,589 - OH686_11450 0.78 +1.1
2,360,628 + OH686_11450 0.82 +0.2
2,360,628 + OH686_11450 0.82 +0.5
2,360,628 + OH686_11450 0.82 +1.0
2,360,628 + OH686_11450 0.82 +0.7
2,360,628 + OH686_11450 0.82 +0.3
2,360,628 + OH686_11450 0.82 +0.5
2,360,628 + OH686_11450 0.82 +1.5
2,360,628 + OH686_11450 0.82 +0.8
2,360,628 + OH686_11450 0.82 +1.2
2,360,629 - OH686_11450 0.82 +0.2
2,360,629 - OH686_11450 0.82 +0.6
2,360,629 - OH686_11450 0.82 +0.8
2,360,629 - OH686_11450 0.82 +2.2
2,360,629 - OH686_11450 0.82 +1.2
2,360,629 - OH686_11450 0.82 +1.1
2,360,629 - OH686_11450 0.82 +0.9
2,360,629 - OH686_11450 0.82 +2.3
2,360,629 - OH686_11450 0.82 +1.0
2,360,629 - OH686_11450 0.82 +0.3
2,360,629 - OH686_11450 0.82 +1.0
2,360,640 + OH686_11450 0.83 +0.4
2,360,640 + OH686_11450 0.83 +0.7
2,360,766 + +1.2
2,360,766 + +0.1
2,360,766 + +1.0
2,360,766 + +0.8
2,360,766 + +0.2
2,360,767 - +0.7
2,360,767 - +1.1
2,360,800 + -0.2
2,360,801 - -1.0
2,360,825 + -0.6
2,360,825 + -0.5
2,360,825 + +0.4
2,360,825 + +1.5
2,360,826 - +1.2
2,360,924 + OH686_11455 0.12 +0.8
2,360,924 + OH686_11455 0.12 +0.7
2,360,924 + OH686_11455 0.12 +0.4
2,360,925 - OH686_11455 0.12 +0.7
2,360,925 - OH686_11455 0.12 +0.7
2,360,925 - OH686_11455 0.12 +0.5
2,360,925 - OH686_11455 0.12 +1.3
2,360,945 + OH686_11455 0.14 +1.3
2,360,946 - OH686_11455 0.14 +0.7
2,360,981 + OH686_11455 0.17 +0.2
2,360,981 + OH686_11455 0.17 +1.0
2,360,981 + OH686_11455 0.17 -0.2
2,360,981 + OH686_11455 0.17 -2.1
2,361,048 - OH686_11455 0.23 +1.2
2,361,095 + OH686_11455 0.27 +1.3
2,361,095 + OH686_11455 0.27 +0.9
2,361,095 + OH686_11455 0.27 +0.7
2,361,095 + OH686_11455 0.27 +0.4
2,361,095 + OH686_11455 0.27 +0.6
2,361,095 + OH686_11455 0.27 +0.3
2,361,096 - OH686_11455 0.27 +0.7
2,361,096 - OH686_11455 0.27 +1.8
2,361,096 - OH686_11455 0.27 -0.8
2,361,096 - OH686_11455 0.27 +1.0
2,361,096 - OH686_11455 0.27 +0.7
2,361,096 - OH686_11455 0.27 +0.4
2,361,180 + OH686_11455 0.34 +1.6
2,361,221 + OH686_11455 0.37 +1.1
2,361,221 + OH686_11455 0.37 +0.9
2,361,221 + OH686_11455 0.37 +0.9
2,361,221 + OH686_11455 0.37 +0.2
2,361,221 + OH686_11455 0.37 +0.6
2,361,221 + OH686_11455 0.37 +1.7
2,361,221 + OH686_11455 0.37 +1.1
2,361,221 + OH686_11455 0.37 +1.2
2,361,221 + OH686_11455 0.37 +1.0
2,361,222 - OH686_11455 0.38 +0.5
2,361,222 - OH686_11455 0.38 +0.8
2,361,222 - OH686_11455 0.38 -0.0
2,361,222 - OH686_11455 0.38 -0.1
2,361,222 - OH686_11455 0.38 +0.5
2,361,222 - OH686_11455 0.38 +1.2
2,361,222 - OH686_11455 0.38 +0.7
2,361,222 - OH686_11455 0.38 +1.5
2,361,222 - OH686_11455 0.38 +1.4
2,361,635 + OH686_11455 0.73 +0.1
2,361,635 + OH686_11455 0.73 -0.2
2,361,635 + OH686_11455 0.73 +0.5
2,361,635 + OH686_11455 0.73 +0.9
2,361,636 - OH686_11455 0.73 -0.4
2,361,636 - OH686_11455 0.73 +0.4
2,361,669 - OH686_11455 0.76 +0.9

Or see this region's nucleotide sequence