Strain Fitness in Pseudomonas sp. S08-1 around OH686_11095

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_11090 and OH686_11095 are separated by 12 nucleotidesOH686_11095 and OH686_11100 are separated by 171 nucleotides OH686_11090: OH686_11090 - Osmolarity sensory histidine kinase EnvZ, at 2,281,518 to 2,282,831 _11090 OH686_11095: OH686_11095 - Two-component system response regulator OmpR, at 2,282,844 to 2,283,575 _11095 OH686_11100: OH686_11100 - Transcription accessory protein (S1 RNA-binding domain), at 2,283,747 to 2,286,083 _11100 Position (kb) 2282 2283 2284Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2281.936 kb on + strand, within OH686_11090at 2281.936 kb on + strand, within OH686_11090at 2281.936 kb on + strand, within OH686_11090at 2281.936 kb on + strand, within OH686_11090at 2281.937 kb on - strand, within OH686_11090at 2281.937 kb on - strand, within OH686_11090at 2282.042 kb on + strand, within OH686_11090at 2282.042 kb on + strand, within OH686_11090at 2282.042 kb on + strand, within OH686_11090at 2282.042 kb on + strand, within OH686_11090at 2282.042 kb on + strand, within OH686_11090at 2282.042 kb on + strand, within OH686_11090at 2282.042 kb on + strand, within OH686_11090at 2282.043 kb on - strand, within OH686_11090at 2282.043 kb on - strand, within OH686_11090at 2282.043 kb on - strand, within OH686_11090at 2282.043 kb on - strand, within OH686_11090at 2282.043 kb on - strand, within OH686_11090at 2282.043 kb on - strand, within OH686_11090at 2282.218 kb on + strand, within OH686_11090at 2282.218 kb on + strand, within OH686_11090at 2282.219 kb on - strand, within OH686_11090at 2282.425 kb on + strand, within OH686_11090at 2282.425 kb on + strand, within OH686_11090at 2282.544 kb on + strand, within OH686_11090at 2282.544 kb on + strand, within OH686_11090at 2282.545 kb on - strand, within OH686_11090at 2282.545 kb on - strand, within OH686_11090at 2282.545 kb on - strand, within OH686_11090at 2282.663 kb on - strand, within OH686_11090at 2282.734 kb on + strandat 2282.734 kb on + strandat 2282.734 kb on + strandat 2282.734 kb on + strandat 2282.734 kb on + strandat 2282.734 kb on + strandat 2282.734 kb on + strandat 2282.734 kb on + strandat 2282.734 kb on + strandat 2282.735 kb on - strandat 2282.735 kb on - strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.845 kb on + strandat 2282.846 kb on - strandat 2282.846 kb on - strandat 2282.846 kb on - strandat 2282.846 kb on - strandat 2282.846 kb on - strandat 2282.846 kb on - strandat 2282.846 kb on - strandat 2282.846 kb on - strandat 2282.846 kb on - strandat 2282.846 kb on - strandat 2282.846 kb on - strandat 2282.846 kb on - strandat 2282.853 kb on - strandat 2282.853 kb on - strandat 2282.872 kb on + strandat 2282.872 kb on + strandat 2282.872 kb on + strandat 2282.872 kb on + strandat 2282.872 kb on + strandat 2282.873 kb on - strandat 2282.873 kb on - strandat 2282.873 kb on - strandat 2282.873 kb on - strandat 2282.873 kb on - strandat 2282.873 kb on - strandat 2282.898 kb on - strandat 2282.899 kb on + strandat 2282.899 kb on + strandat 2282.899 kb on + strandat 2282.900 kb on - strandat 2282.900 kb on - strandat 2282.900 kb on - strandat 2282.900 kb on - strandat 2283.077 kb on + strand, within OH686_11095at 2283.078 kb on - strand, within OH686_11095at 2283.078 kb on - strand, within OH686_11095at 2283.078 kb on - strand, within OH686_11095at 2283.078 kb on - strand, within OH686_11095at 2283.078 kb on - strand, within OH686_11095at 2283.078 kb on - strand, within OH686_11095at 2283.133 kb on + strand, within OH686_11095at 2283.256 kb on + strand, within OH686_11095at 2283.256 kb on + strand, within OH686_11095at 2283.256 kb on + strand, within OH686_11095at 2283.256 kb on + strand, within OH686_11095at 2283.256 kb on + strand, within OH686_11095at 2283.257 kb on - strand, within OH686_11095at 2283.468 kb on + strand, within OH686_11095at 2283.566 kb on + strandat 2283.566 kb on + strandat 2283.566 kb on + strandat 2283.566 kb on + strandat 2283.567 kb on - strandat 2283.567 kb on - strandat 2283.567 kb on - strandat 2283.567 kb on - strandat 2283.567 kb on - strandat 2283.567 kb on - strandat 2283.567 kb on - strandat 2283.567 kb on - strandat 2283.605 kb on + strandat 2283.643 kb on + strandat 2283.691 kb on + strandat 2283.691 kb on + strandat 2283.691 kb on + strandat 2283.691 kb on + strandat 2283.692 kb on - strandat 2283.692 kb on - strandat 2283.692 kb on - strandat 2283.692 kb on - strandat 2283.692 kb on - strandat 2283.692 kb on - strandat 2283.692 kb on - strandat 2283.692 kb on - strandat 2283.692 kb on - strandat 2283.693 kb on + strandat 2283.694 kb on - strandat 2283.694 kb on - strandat 2283.694 kb on - strandat 2283.739 kb on + strandat 2283.739 kb on + strandat 2283.740 kb on - strandat 2283.740 kb on - strandat 2283.925 kb on - strandat 2284.050 kb on + strand, within OH686_11100at 2284.050 kb on + strand, within OH686_11100at 2284.051 kb on - strand, within OH686_11100at 2284.051 kb on - strand, within OH686_11100at 2284.059 kb on + strand, within OH686_11100at 2284.059 kb on + strand, within OH686_11100at 2284.059 kb on + strand, within OH686_11100at 2284.059 kb on + strand, within OH686_11100at 2284.059 kb on + strand, within OH686_11100at 2284.059 kb on + strand, within OH686_11100at 2284.060 kb on - strand, within OH686_11100at 2284.060 kb on - strand, within OH686_11100at 2284.060 kb on - strand, within OH686_11100at 2284.060 kb on - strand, within OH686_11100at 2284.060 kb on - strand, within OH686_11100at 2284.060 kb on - strand, within OH686_11100at 2284.060 kb on - strand, within OH686_11100at 2284.060 kb on - strand, within OH686_11100at 2284.060 kb on - strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.230 kb on + strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.231 kb on - strand, within OH686_11100at 2284.362 kb on + strand, within OH686_11100at 2284.362 kb on + strand, within OH686_11100at 2284.362 kb on + strand, within OH686_11100at 2284.363 kb on - strand, within OH686_11100at 2284.363 kb on - strand, within OH686_11100at 2284.394 kb on - strand, within OH686_11100at 2284.568 kb on - strand, within OH686_11100at 2284.568 kb on - strand, within OH686_11100at 2284.568 kb on - strand, within OH686_11100at 2284.568 kb on - strand, within OH686_11100at 2284.568 kb on - strand, within OH686_11100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
2,281,936 + OH686_11090 0.32 +0.0
2,281,936 + OH686_11090 0.32 +0.2
2,281,936 + OH686_11090 0.32 -0.0
2,281,936 + OH686_11090 0.32 +0.1
2,281,937 - OH686_11090 0.32 -0.3
2,281,937 - OH686_11090 0.32 -0.2
2,282,042 + OH686_11090 0.40 +0.6
2,282,042 + OH686_11090 0.40 +0.8
2,282,042 + OH686_11090 0.40 -0.3
2,282,042 + OH686_11090 0.40 +0.3
2,282,042 + OH686_11090 0.40 -2.3
2,282,042 + OH686_11090 0.40 -0.5
2,282,042 + OH686_11090 0.40 -1.0
2,282,043 - OH686_11090 0.40 +0.0
2,282,043 - OH686_11090 0.40 +0.4
2,282,043 - OH686_11090 0.40 +0.1
2,282,043 - OH686_11090 0.40 +0.1
2,282,043 - OH686_11090 0.40 +0.9
2,282,043 - OH686_11090 0.40 +2.0
2,282,218 + OH686_11090 0.53 -0.2
2,282,218 + OH686_11090 0.53 +0.5
2,282,219 - OH686_11090 0.53 -0.6
2,282,425 + OH686_11090 0.69 -1.5
2,282,425 + OH686_11090 0.69 +0.0
2,282,544 + OH686_11090 0.78 +0.0
2,282,544 + OH686_11090 0.78 +0.3
2,282,545 - OH686_11090 0.78 -0.3
2,282,545 - OH686_11090 0.78 +0.2
2,282,545 - OH686_11090 0.78 -1.9
2,282,663 - OH686_11090 0.87 -0.4
2,282,734 + -1.9
2,282,734 + +0.4
2,282,734 + -0.2
2,282,734 + +0.2
2,282,734 + -1.8
2,282,734 + -0.2
2,282,734 + +0.0
2,282,734 + +0.4
2,282,734 + +0.4
2,282,735 - -1.5
2,282,735 - -0.3
2,282,845 + -0.7
2,282,845 + -0.4
2,282,845 + -0.2
2,282,845 + -1.6
2,282,845 + -0.7
2,282,845 + +1.3
2,282,845 + -0.4
2,282,845 + -0.9
2,282,845 + +0.1
2,282,845 + -1.3
2,282,845 + -0.1
2,282,845 + -0.8
2,282,845 + -0.4
2,282,845 + +0.5
2,282,845 + -0.4
2,282,845 + +0.4
2,282,845 + -1.2
2,282,845 + +0.5
2,282,845 + -0.2
2,282,845 + +0.4
2,282,845 + +1.1
2,282,845 + -1.0
2,282,846 - +0.7
2,282,846 - +0.1
2,282,846 - -0.0
2,282,846 - -0.4
2,282,846 - +0.7
2,282,846 - -0.5
2,282,846 - +0.7
2,282,846 - +0.1
2,282,846 - +1.0
2,282,846 - -2.2
2,282,846 - +0.2
2,282,846 - +1.1
2,282,853 - -0.2
2,282,853 - +0.0
2,282,872 + -0.7
2,282,872 + +0.6
2,282,872 + +0.4
2,282,872 + +0.6
2,282,872 + -0.3
2,282,873 - +3.7
2,282,873 - +2.4
2,282,873 - +2.5
2,282,873 - +2.9
2,282,873 - +2.9
2,282,873 - +1.9
2,282,898 - +3.0
2,282,899 + +1.0
2,282,899 + +0.4
2,282,899 + +0.8
2,282,900 - +2.5
2,282,900 - +2.3
2,282,900 - +2.5
2,282,900 - +3.0
2,283,077 + OH686_11095 0.32 +0.2
2,283,078 - OH686_11095 0.32 +1.9
2,283,078 - OH686_11095 0.32 +1.7
2,283,078 - OH686_11095 0.32 +3.2
2,283,078 - OH686_11095 0.32 +1.4
2,283,078 - OH686_11095 0.32 +0.4
2,283,078 - OH686_11095 0.32 +0.7
2,283,133 + OH686_11095 0.39 -0.1
2,283,256 + OH686_11095 0.56 +0.4
2,283,256 + OH686_11095 0.56 -0.2
2,283,256 + OH686_11095 0.56 +0.3
2,283,256 + OH686_11095 0.56 +0.9
2,283,256 + OH686_11095 0.56 +0.1
2,283,257 - OH686_11095 0.56 +2.1
2,283,468 + OH686_11095 0.85 -0.7
2,283,566 + +0.1
2,283,566 + -0.8
2,283,566 + +0.3
2,283,566 + +0.0
2,283,567 - +2.2
2,283,567 - +2.0
2,283,567 - +1.3
2,283,567 - +3.4
2,283,567 - +1.9
2,283,567 - +2.0
2,283,567 - +0.0
2,283,567 - +0.1
2,283,605 + +0.6
2,283,643 + +0.7
2,283,691 + -0.3
2,283,691 + -0.7
2,283,691 + -1.0
2,283,691 + -1.0
2,283,692 - +0.2
2,283,692 - +0.1
2,283,692 - -0.2
2,283,692 - -1.1
2,283,692 - -0.8
2,283,692 - -0.8
2,283,692 - -0.7
2,283,692 - -0.3
2,283,692 - +0.8
2,283,693 + -0.9
2,283,694 - -0.2
2,283,694 - -1.2
2,283,694 - -0.4
2,283,739 + -1.0
2,283,739 + -0.4
2,283,740 - -0.2
2,283,740 - -0.7
2,283,925 - -0.3
2,284,050 + OH686_11100 0.13 -0.2
2,284,050 + OH686_11100 0.13 +0.9
2,284,051 - OH686_11100 0.13 -0.5
2,284,051 - OH686_11100 0.13 -0.5
2,284,059 + OH686_11100 0.13 -0.5
2,284,059 + OH686_11100 0.13 -1.2
2,284,059 + OH686_11100 0.13 +0.0
2,284,059 + OH686_11100 0.13 -1.4
2,284,059 + OH686_11100 0.13 -1.8
2,284,059 + OH686_11100 0.13 -0.8
2,284,060 - OH686_11100 0.13 -0.4
2,284,060 - OH686_11100 0.13 -1.7
2,284,060 - OH686_11100 0.13 -0.6
2,284,060 - OH686_11100 0.13 -1.2
2,284,060 - OH686_11100 0.13 +0.6
2,284,060 - OH686_11100 0.13 -2.2
2,284,060 - OH686_11100 0.13 +0.5
2,284,060 - OH686_11100 0.13 -1.0
2,284,060 - OH686_11100 0.13 -0.5
2,284,230 + OH686_11100 0.21 -2.8
2,284,230 + OH686_11100 0.21 -0.2
2,284,230 + OH686_11100 0.21 -0.7
2,284,230 + OH686_11100 0.21 -2.5
2,284,230 + OH686_11100 0.21 +0.2
2,284,230 + OH686_11100 0.21 +1.2
2,284,230 + OH686_11100 0.21 -0.5
2,284,230 + OH686_11100 0.21 -0.4
2,284,230 + OH686_11100 0.21 -0.1
2,284,230 + OH686_11100 0.21 +0.7
2,284,230 + OH686_11100 0.21 -1.1
2,284,230 + OH686_11100 0.21 +0.3
2,284,230 + OH686_11100 0.21 -1.2
2,284,230 + OH686_11100 0.21 -0.3
2,284,231 - OH686_11100 0.21 +0.0
2,284,231 - OH686_11100 0.21 -0.9
2,284,231 - OH686_11100 0.21 -0.7
2,284,231 - OH686_11100 0.21 -1.1
2,284,231 - OH686_11100 0.21 -0.1
2,284,231 - OH686_11100 0.21 +0.0
2,284,231 - OH686_11100 0.21 -0.5
2,284,231 - OH686_11100 0.21 -1.4
2,284,231 - OH686_11100 0.21 +0.7
2,284,231 - OH686_11100 0.21 -2.5
2,284,231 - OH686_11100 0.21 +0.4
2,284,231 - OH686_11100 0.21 -0.5
2,284,231 - OH686_11100 0.21 -2.2
2,284,231 - OH686_11100 0.21 +0.7
2,284,231 - OH686_11100 0.21 -1.6
2,284,362 + OH686_11100 0.26 -1.0
2,284,362 + OH686_11100 0.26 +2.3
2,284,362 + OH686_11100 0.26 +0.0
2,284,363 - OH686_11100 0.26 -0.8
2,284,363 - OH686_11100 0.26 -0.8
2,284,394 - OH686_11100 0.28 -0.1
2,284,568 - OH686_11100 0.35 -1.0
2,284,568 - OH686_11100 0.35 +0.8
2,284,568 - OH686_11100 0.35 +0.9
2,284,568 - OH686_11100 0.35 +1.0
2,284,568 - OH686_11100 0.35 +0.7

Or see this region's nucleotide sequence