Strain Fitness in Pseudomonas sp. S08-1 around OH686_10600

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_10595 and OH686_10600 are separated by 3 nucleotidesOH686_10600 and OH686_10605 are separated by 171 nucleotides OH686_10595: OH686_10595 - Serine acetyltransferase , at 2,173,829 to 2,174,812 _10595 OH686_10600: OH686_10600 - Ser-tRNA(Ala) deacylase or Gly-tRNA(Ala) deacylase, at 2,174,816 to 2,175,541 _10600 OH686_10605: OH686_10605 - Vibriolysin, extracellular zinc protease or Pseudolysin, extracellular zinc protease , at 2,175,713 to 2,177,194 _10605 Position (kb) 2174 2175 2176Strain fitness (log2 ratio) -1 0 1 2at 2173.835 kb on + strandat 2173.857 kb on - strandat 2173.857 kb on - strandat 2173.922 kb on + strandat 2173.979 kb on + strand, within OH686_10595at 2173.979 kb on + strand, within OH686_10595at 2173.979 kb on + strand, within OH686_10595at 2173.979 kb on + strand, within OH686_10595at 2173.979 kb on + strand, within OH686_10595at 2173.980 kb on - strand, within OH686_10595at 2173.980 kb on - strand, within OH686_10595at 2173.980 kb on - strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.033 kb on + strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.034 kb on - strand, within OH686_10595at 2174.255 kb on + strand, within OH686_10595at 2174.255 kb on + strand, within OH686_10595at 2174.255 kb on + strand, within OH686_10595at 2174.255 kb on + strand, within OH686_10595at 2174.255 kb on + strand, within OH686_10595at 2174.255 kb on + strand, within OH686_10595at 2174.255 kb on + strand, within OH686_10595at 2174.255 kb on + strand, within OH686_10595at 2174.256 kb on - strand, within OH686_10595at 2174.256 kb on - strand, within OH686_10595at 2174.256 kb on - strand, within OH686_10595at 2174.505 kb on - strand, within OH686_10595at 2174.505 kb on - strand, within OH686_10595at 2174.836 kb on + strandat 2174.836 kb on + strandat 2174.837 kb on - strandat 2174.890 kb on - strand, within OH686_10600at 2174.890 kb on - strand, within OH686_10600at 2174.936 kb on + strand, within OH686_10600at 2174.937 kb on - strand, within OH686_10600at 2175.676 kb on - strandat 2175.676 kb on - strandat 2175.718 kb on + strandat 2175.718 kb on + strandat 2175.718 kb on + strandat 2175.718 kb on + strandat 2175.718 kb on + strandat 2175.718 kb on + strandat 2175.719 kb on - strandat 2175.719 kb on - strandat 2175.719 kb on - strandat 2175.719 kb on - strandat 2175.719 kb on - strandat 2175.744 kb on + strandat 2175.744 kb on + strandat 2175.744 kb on + strandat 2175.745 kb on - strandat 2175.745 kb on - strandat 2175.938 kb on + strand, within OH686_10605at 2175.938 kb on + strand, within OH686_10605at 2175.938 kb on + strand, within OH686_10605at 2175.938 kb on + strand, within OH686_10605at 2175.939 kb on - strand, within OH686_10605at 2175.939 kb on - strand, within OH686_10605at 2175.939 kb on - strand, within OH686_10605at 2176.178 kb on + strand, within OH686_10605at 2176.178 kb on + strand, within OH686_10605at 2176.178 kb on + strand, within OH686_10605at 2176.178 kb on + strand, within OH686_10605at 2176.178 kb on + strand, within OH686_10605at 2176.178 kb on + strand, within OH686_10605at 2176.178 kb on + strand, within OH686_10605at 2176.179 kb on - strand, within OH686_10605at 2176.179 kb on - strand, within OH686_10605at 2176.179 kb on - strand, within OH686_10605at 2176.332 kb on - strand, within OH686_10605at 2176.418 kb on + strand, within OH686_10605at 2176.418 kb on + strand, within OH686_10605at 2176.418 kb on + strand, within OH686_10605at 2176.418 kb on + strand, within OH686_10605at 2176.418 kb on + strand, within OH686_10605at 2176.418 kb on + strand, within OH686_10605at 2176.419 kb on - strand, within OH686_10605at 2176.419 kb on - strand, within OH686_10605at 2176.419 kb on - strand, within OH686_10605at 2176.460 kb on + strand, within OH686_10605at 2176.460 kb on + strand, within OH686_10605at 2176.461 kb on - strand, within OH686_10605at 2176.461 kb on - strand, within OH686_10605at 2176.461 kb on - strand, within OH686_10605at 2176.461 kb on - strand, within OH686_10605at 2176.469 kb on + strand, within OH686_10605at 2176.469 kb on + strand, within OH686_10605at 2176.469 kb on + strand, within OH686_10605at 2176.469 kb on + strand, within OH686_10605at 2176.470 kb on - strand, within OH686_10605at 2176.470 kb on - strand, within OH686_10605at 2176.470 kb on - strand, within OH686_10605at 2176.470 kb on - strand, within OH686_10605at 2176.470 kb on - strand, within OH686_10605at 2176.514 kb on + strand, within OH686_10605at 2176.514 kb on + strand, within OH686_10605at 2176.514 kb on + strand, within OH686_10605at 2176.515 kb on - strand, within OH686_10605at 2176.515 kb on - strand, within OH686_10605at 2176.515 kb on - strand, within OH686_10605at 2176.541 kb on + strand, within OH686_10605at 2176.541 kb on + strand, within OH686_10605at 2176.541 kb on + strand, within OH686_10605at 2176.541 kb on + strand, within OH686_10605at 2176.541 kb on + strand, within OH686_10605at 2176.541 kb on + strand, within OH686_10605at 2176.541 kb on + strand, within OH686_10605

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,173,835 + +0.3
2,173,857 - -0.7
2,173,857 - +0.6
2,173,922 + +0.0
2,173,979 + OH686_10595 0.15 -0.2
2,173,979 + OH686_10595 0.15 +0.8
2,173,979 + OH686_10595 0.15 +1.9
2,173,979 + OH686_10595 0.15 -0.4
2,173,979 + OH686_10595 0.15 +1.3
2,173,980 - OH686_10595 0.15 +0.4
2,173,980 - OH686_10595 0.15 +1.2
2,173,980 - OH686_10595 0.15 +0.8
2,174,033 + OH686_10595 0.21 -0.7
2,174,033 + OH686_10595 0.21 +0.2
2,174,033 + OH686_10595 0.21 -0.1
2,174,033 + OH686_10595 0.21 +0.9
2,174,033 + OH686_10595 0.21 +0.4
2,174,033 + OH686_10595 0.21 +0.2
2,174,033 + OH686_10595 0.21 -0.5
2,174,033 + OH686_10595 0.21 -0.1
2,174,033 + OH686_10595 0.21 +0.4
2,174,033 + OH686_10595 0.21 +0.2
2,174,033 + OH686_10595 0.21 -0.7
2,174,033 + OH686_10595 0.21 +0.4
2,174,033 + OH686_10595 0.21 +0.4
2,174,033 + OH686_10595 0.21 -0.6
2,174,033 + OH686_10595 0.21 -0.7
2,174,033 + OH686_10595 0.21 +1.5
2,174,033 + OH686_10595 0.21 -0.1
2,174,033 + OH686_10595 0.21 -0.9
2,174,033 + OH686_10595 0.21 -0.8
2,174,034 - OH686_10595 0.21 -0.4
2,174,034 - OH686_10595 0.21 +0.4
2,174,034 - OH686_10595 0.21 +0.6
2,174,034 - OH686_10595 0.21 +0.2
2,174,034 - OH686_10595 0.21 +1.6
2,174,034 - OH686_10595 0.21 +0.7
2,174,034 - OH686_10595 0.21 +0.3
2,174,034 - OH686_10595 0.21 +0.7
2,174,034 - OH686_10595 0.21 +0.8
2,174,034 - OH686_10595 0.21 -1.3
2,174,034 - OH686_10595 0.21 +0.6
2,174,034 - OH686_10595 0.21 +0.3
2,174,034 - OH686_10595 0.21 +0.4
2,174,034 - OH686_10595 0.21 +1.0
2,174,034 - OH686_10595 0.21 +1.3
2,174,034 - OH686_10595 0.21 -0.6
2,174,034 - OH686_10595 0.21 +1.6
2,174,034 - OH686_10595 0.21 +0.5
2,174,034 - OH686_10595 0.21 +0.9
2,174,034 - OH686_10595 0.21 -1.0
2,174,034 - OH686_10595 0.21 +0.4
2,174,034 - OH686_10595 0.21 +0.7
2,174,034 - OH686_10595 0.21 -0.6
2,174,034 - OH686_10595 0.21 +0.0
2,174,255 + OH686_10595 0.43 +0.8
2,174,255 + OH686_10595 0.43 +0.1
2,174,255 + OH686_10595 0.43 +0.0
2,174,255 + OH686_10595 0.43 +1.0
2,174,255 + OH686_10595 0.43 +0.7
2,174,255 + OH686_10595 0.43 -0.0
2,174,255 + OH686_10595 0.43 +0.1
2,174,255 + OH686_10595 0.43 -0.3
2,174,256 - OH686_10595 0.43 +0.1
2,174,256 - OH686_10595 0.43 +1.0
2,174,256 - OH686_10595 0.43 +0.2
2,174,505 - OH686_10595 0.69 +0.1
2,174,505 - OH686_10595 0.69 +0.7
2,174,836 + +0.5
2,174,836 + +0.0
2,174,837 - +0.5
2,174,890 - OH686_10600 0.10 +1.3
2,174,890 - OH686_10600 0.10 +0.2
2,174,936 + OH686_10600 0.17 +0.6
2,174,937 - OH686_10600 0.17 +0.4
2,175,676 - +1.3
2,175,676 - -0.4
2,175,718 + -1.4
2,175,718 + +0.1
2,175,718 + -0.1
2,175,718 + -0.5
2,175,718 + -0.6
2,175,718 + +1.0
2,175,719 - +0.2
2,175,719 - +0.4
2,175,719 - -0.3
2,175,719 - +0.0
2,175,719 - -0.5
2,175,744 + +0.7
2,175,744 + -0.4
2,175,744 + +0.8
2,175,745 - -1.0
2,175,745 - +0.1
2,175,938 + OH686_10605 0.15 +1.2
2,175,938 + OH686_10605 0.15 -0.6
2,175,938 + OH686_10605 0.15 -0.3
2,175,938 + OH686_10605 0.15 +1.0
2,175,939 - OH686_10605 0.15 +0.5
2,175,939 - OH686_10605 0.15 +0.5
2,175,939 - OH686_10605 0.15 -0.1
2,176,178 + OH686_10605 0.31 +0.8
2,176,178 + OH686_10605 0.31 +0.0
2,176,178 + OH686_10605 0.31 +0.3
2,176,178 + OH686_10605 0.31 +1.3
2,176,178 + OH686_10605 0.31 +0.6
2,176,178 + OH686_10605 0.31 -0.7
2,176,178 + OH686_10605 0.31 -1.3
2,176,179 - OH686_10605 0.31 +0.8
2,176,179 - OH686_10605 0.31 -0.6
2,176,179 - OH686_10605 0.31 +0.8
2,176,332 - OH686_10605 0.42 -1.7
2,176,418 + OH686_10605 0.48 -0.5
2,176,418 + OH686_10605 0.48 +0.2
2,176,418 + OH686_10605 0.48 +0.6
2,176,418 + OH686_10605 0.48 +0.4
2,176,418 + OH686_10605 0.48 -0.5
2,176,418 + OH686_10605 0.48 -1.6
2,176,419 - OH686_10605 0.48 -0.0
2,176,419 - OH686_10605 0.48 +0.5
2,176,419 - OH686_10605 0.48 -0.3
2,176,460 + OH686_10605 0.50 -0.8
2,176,460 + OH686_10605 0.50 -0.4
2,176,461 - OH686_10605 0.50 +1.4
2,176,461 - OH686_10605 0.50 -0.2
2,176,461 - OH686_10605 0.50 -0.1
2,176,461 - OH686_10605 0.50 -0.3
2,176,469 + OH686_10605 0.51 -0.3
2,176,469 + OH686_10605 0.51 +0.8
2,176,469 + OH686_10605 0.51 -0.4
2,176,469 + OH686_10605 0.51 +0.7
2,176,470 - OH686_10605 0.51 +0.6
2,176,470 - OH686_10605 0.51 +0.7
2,176,470 - OH686_10605 0.51 +0.7
2,176,470 - OH686_10605 0.51 -0.2
2,176,470 - OH686_10605 0.51 +0.3
2,176,514 + OH686_10605 0.54 -1.4
2,176,514 + OH686_10605 0.54 +0.2
2,176,514 + OH686_10605 0.54 -0.2
2,176,515 - OH686_10605 0.54 +0.0
2,176,515 - OH686_10605 0.54 +1.5
2,176,515 - OH686_10605 0.54 +1.5
2,176,541 + OH686_10605 0.56 -0.5
2,176,541 + OH686_10605 0.56 -0.4
2,176,541 + OH686_10605 0.56 -1.1
2,176,541 + OH686_10605 0.56 +0.2
2,176,541 + OH686_10605 0.56 +0.2
2,176,541 + OH686_10605 0.56 +1.0
2,176,541 + OH686_10605 0.56 -0.3

Or see this region's nucleotide sequence