Strain Fitness in Pseudomonas sp. S08-1 around OH686_09650

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_09640 and OH686_09645 overlap by 93 nucleotidesOH686_09645 and OH686_09650 are separated by 29 nucleotidesOH686_09650 and OH686_09655 are separated by 45 nucleotidesOH686_09655 and OH686_09660 overlap by 4 nucleotides OH686_09640: OH686_09640 - Glycosyl transferase in large core OS assembly cluster, at 1,969,755 to 1,970,921 _09640 OH686_09645: OH686_09645 - hypothetical protein' product='hypothetical protein, at 1,970,829 to 1,971,017 _09645 OH686_09650: OH686_09650 - Carbamoyltransferase in large core OS assembly cluster, at 1,971,047 to 1,972,801 _09650 OH686_09655: OH686_09655 - CDS, at 1,972,847 to 1,972,960 _09655 OH686_09660: OH686_09660 - Serine/threonine protein kinase, at 1,972,957 to 1,974,378 _09660 Position (kb) 1971 1972 1973Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1970.072 kb on - strand, within OH686_09640at 1970.967 kb on + strand, within OH686_09645at 1970.967 kb on + strand, within OH686_09645at 1970.967 kb on + strand, within OH686_09645at 1970.967 kb on + strand, within OH686_09645at 1970.967 kb on + strand, within OH686_09645at 1970.967 kb on + strand, within OH686_09645at 1970.968 kb on - strand, within OH686_09645at 1970.968 kb on - strand, within OH686_09645at 1970.968 kb on - strand, within OH686_09645at 1970.975 kb on + strand, within OH686_09645at 1970.975 kb on + strand, within OH686_09645at 1970.976 kb on - strand, within OH686_09645at 1970.976 kb on - strand, within OH686_09645at 1970.976 kb on - strand, within OH686_09645at 1971.005 kb on - strandat 1971.015 kb on + strandat 1971.052 kb on + strandat 1971.052 kb on + strandat 1971.052 kb on + strandat 1971.052 kb on + strandat 1971.052 kb on + strandat 1971.052 kb on + strandat 1971.052 kb on + strandat 1971.052 kb on + strandat 1971.053 kb on - strandat 1971.053 kb on - strandat 1971.053 kb on - strandat 1971.053 kb on - strandat 1971.053 kb on - strandat 1971.053 kb on - strandat 1971.053 kb on - strandat 1971.060 kb on + strandat 1971.060 kb on + strandat 1971.060 kb on + strandat 1971.061 kb on - strandat 1971.061 kb on - strandat 1971.061 kb on - strandat 1971.061 kb on - strandat 1971.061 kb on - strandat 1971.061 kb on - strandat 1971.108 kb on + strandat 1971.108 kb on + strandat 1971.108 kb on + strandat 1971.109 kb on - strandat 1971.126 kb on + strandat 1971.126 kb on + strandat 1971.126 kb on + strandat 1971.126 kb on + strandat 1971.127 kb on - strandat 1971.127 kb on - strandat 1971.127 kb on - strandat 1971.127 kb on - strandat 1971.127 kb on - strandat 1971.127 kb on - strandat 1971.127 kb on - strandat 1971.127 kb on - strandat 1971.127 kb on - strandat 1971.127 kb on - strandat 1971.244 kb on - strand, within OH686_09650at 1971.258 kb on + strand, within OH686_09650at 1971.258 kb on + strand, within OH686_09650at 1971.258 kb on + strand, within OH686_09650at 1971.258 kb on + strand, within OH686_09650at 1971.259 kb on - strand, within OH686_09650at 1971.259 kb on - strand, within OH686_09650at 1971.259 kb on - strand, within OH686_09650at 1971.289 kb on + strand, within OH686_09650at 1971.289 kb on + strand, within OH686_09650at 1971.290 kb on - strand, within OH686_09650at 1971.290 kb on - strand, within OH686_09650at 1971.290 kb on - strand, within OH686_09650at 1971.621 kb on - strand, within OH686_09650at 1971.672 kb on + strand, within OH686_09650at 1971.673 kb on - strand, within OH686_09650at 1971.673 kb on - strand, within OH686_09650at 1971.687 kb on + strand, within OH686_09650at 1971.687 kb on + strand, within OH686_09650at 1971.687 kb on + strand, within OH686_09650at 1971.687 kb on + strand, within OH686_09650at 1971.688 kb on - strand, within OH686_09650at 1971.688 kb on - strand, within OH686_09650at 1971.688 kb on - strand, within OH686_09650at 1971.736 kb on - strand, within OH686_09650at 1971.736 kb on - strand, within OH686_09650at 1971.758 kb on - strand, within OH686_09650at 1971.897 kb on + strand, within OH686_09650at 1971.897 kb on + strand, within OH686_09650at 1971.897 kb on + strand, within OH686_09650at 1971.897 kb on + strand, within OH686_09650at 1971.897 kb on + strand, within OH686_09650at 1971.897 kb on + strand, within OH686_09650at 1971.898 kb on - strand, within OH686_09650at 1971.898 kb on - strand, within OH686_09650at 1971.898 kb on - strand, within OH686_09650at 1971.898 kb on - strand, within OH686_09650at 1971.898 kb on - strand, within OH686_09650at 1971.898 kb on - strand, within OH686_09650at 1971.900 kb on + strand, within OH686_09650at 1971.900 kb on + strand, within OH686_09650at 1971.900 kb on + strand, within OH686_09650at 1971.900 kb on + strand, within OH686_09650at 1971.900 kb on + strand, within OH686_09650at 1971.901 kb on - strand, within OH686_09650at 1971.901 kb on - strand, within OH686_09650at 1971.901 kb on - strand, within OH686_09650at 1971.954 kb on + strand, within OH686_09650at 1971.955 kb on - strand, within OH686_09650at 1971.963 kb on + strand, within OH686_09650at 1971.963 kb on + strand, within OH686_09650at 1971.963 kb on + strand, within OH686_09650at 1971.963 kb on + strand, within OH686_09650at 1971.963 kb on + strand, within OH686_09650at 1971.964 kb on - strand, within OH686_09650at 1971.964 kb on - strand, within OH686_09650at 1971.964 kb on - strand, within OH686_09650at 1971.964 kb on - strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.029 kb on + strand, within OH686_09650at 1972.030 kb on - strand, within OH686_09650at 1972.030 kb on - strand, within OH686_09650at 1972.030 kb on - strand, within OH686_09650at 1972.030 kb on - strand, within OH686_09650at 1972.030 kb on - strand, within OH686_09650at 1972.030 kb on - strand, within OH686_09650at 1972.030 kb on - strand, within OH686_09650at 1972.030 kb on - strand, within OH686_09650at 1972.030 kb on - strand, within OH686_09650at 1972.032 kb on + strand, within OH686_09650at 1972.032 kb on + strand, within OH686_09650at 1972.033 kb on - strand, within OH686_09650at 1972.033 kb on - strand, within OH686_09650at 1972.053 kb on + strand, within OH686_09650at 1972.053 kb on + strand, within OH686_09650at 1972.080 kb on + strand, within OH686_09650at 1972.080 kb on + strand, within OH686_09650at 1972.081 kb on - strand, within OH686_09650at 1972.138 kb on - strand, within OH686_09650at 1972.138 kb on - strand, within OH686_09650at 1972.138 kb on - strand, within OH686_09650at 1972.138 kb on - strand, within OH686_09650at 1972.138 kb on - strand, within OH686_09650at 1972.138 kb on - strand, within OH686_09650at 1972.228 kb on - strand, within OH686_09650at 1972.228 kb on - strand, within OH686_09650at 1972.255 kb on - strand, within OH686_09650at 1972.255 kb on - strand, within OH686_09650at 1972.315 kb on - strand, within OH686_09650at 1972.315 kb on - strand, within OH686_09650at 1972.486 kb on - strand, within OH686_09650at 1972.486 kb on - strand, within OH686_09650at 1972.534 kb on - strand, within OH686_09650at 1972.534 kb on - strand, within OH686_09650at 1972.534 kb on - strand, within OH686_09650at 1972.534 kb on - strand, within OH686_09650at 1972.534 kb on - strand, within OH686_09650at 1972.552 kb on - strand, within OH686_09650at 1972.662 kb on + strandat 1972.663 kb on - strandat 1972.740 kb on + strandat 1972.740 kb on + strandat 1972.740 kb on + strandat 1972.740 kb on + strandat 1972.740 kb on + strandat 1972.740 kb on + strandat 1972.740 kb on + strandat 1972.741 kb on - strandat 1972.741 kb on - strandat 1972.741 kb on - strandat 1972.888 kb on + strand, within OH686_09655at 1972.888 kb on + strand, within OH686_09655at 1972.888 kb on + strand, within OH686_09655at 1972.889 kb on - strand, within OH686_09655at 1972.889 kb on - strand, within OH686_09655at 1972.890 kb on + strand, within OH686_09655at 1972.891 kb on - strand, within OH686_09655at 1972.891 kb on - strand, within OH686_09655at 1972.891 kb on - strand, within OH686_09655at 1972.891 kb on - strand, within OH686_09655at 1972.908 kb on + strand, within OH686_09655at 1972.909 kb on - strand, within OH686_09655at 1972.958 kb on + strandat 1972.958 kb on + strandat 1972.959 kb on - strandat 1972.959 kb on - strandat 1972.959 kb on - strandat 1972.959 kb on - strandat 1972.959 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
1,970,072 - OH686_09640 0.27 -1.1
1,970,967 + OH686_09645 0.73 -0.6
1,970,967 + OH686_09645 0.73 -0.0
1,970,967 + OH686_09645 0.73 -1.1
1,970,967 + OH686_09645 0.73 -0.9
1,970,967 + OH686_09645 0.73 +0.1
1,970,967 + OH686_09645 0.73 -0.6
1,970,968 - OH686_09645 0.74 +0.1
1,970,968 - OH686_09645 0.74 -0.9
1,970,968 - OH686_09645 0.74 +0.1
1,970,975 + OH686_09645 0.77 -0.3
1,970,975 + OH686_09645 0.77 -0.6
1,970,976 - OH686_09645 0.78 +1.0
1,970,976 - OH686_09645 0.78 -2.1
1,970,976 - OH686_09645 0.78 +0.2
1,971,005 - +0.4
1,971,015 + +0.5
1,971,052 + +1.8
1,971,052 + +2.2
1,971,052 + +1.5
1,971,052 + +1.2
1,971,052 + +1.0
1,971,052 + +1.4
1,971,052 + +1.3
1,971,052 + +1.2
1,971,053 - +0.6
1,971,053 - +1.1
1,971,053 - +1.2
1,971,053 - +1.1
1,971,053 - +2.1
1,971,053 - +0.8
1,971,053 - +0.1
1,971,060 + +1.6
1,971,060 + +1.8
1,971,060 + +0.7
1,971,061 - +2.6
1,971,061 - +2.0
1,971,061 - +0.4
1,971,061 - -0.6
1,971,061 - +1.6
1,971,061 - +1.7
1,971,108 + +0.6
1,971,108 + +1.5
1,971,108 + +2.1
1,971,109 - +1.4
1,971,126 + +1.6
1,971,126 + +1.9
1,971,126 + +2.4
1,971,126 + +1.8
1,971,127 - +0.0
1,971,127 - +2.4
1,971,127 - +2.0
1,971,127 - +1.4
1,971,127 - +1.4
1,971,127 - +0.0
1,971,127 - +2.3
1,971,127 - +1.0
1,971,127 - +1.7
1,971,127 - +0.7
1,971,244 - OH686_09650 0.11 +2.3
1,971,258 + OH686_09650 0.12 +3.0
1,971,258 + OH686_09650 0.12 -0.8
1,971,258 + OH686_09650 0.12 +2.3
1,971,258 + OH686_09650 0.12 +1.4
1,971,259 - OH686_09650 0.12 +1.3
1,971,259 - OH686_09650 0.12 +1.7
1,971,259 - OH686_09650 0.12 +2.9
1,971,289 + OH686_09650 0.14 +1.0
1,971,289 + OH686_09650 0.14 +1.7
1,971,290 - OH686_09650 0.14 +1.8
1,971,290 - OH686_09650 0.14 +1.3
1,971,290 - OH686_09650 0.14 +1.0
1,971,621 - OH686_09650 0.33 +2.4
1,971,672 + OH686_09650 0.36 +0.2
1,971,673 - OH686_09650 0.36 +0.3
1,971,673 - OH686_09650 0.36 +1.2
1,971,687 + OH686_09650 0.36 +2.0
1,971,687 + OH686_09650 0.36 +2.3
1,971,687 + OH686_09650 0.36 +1.2
1,971,687 + OH686_09650 0.36 +3.3
1,971,688 - OH686_09650 0.37 +1.0
1,971,688 - OH686_09650 0.37 +2.0
1,971,688 - OH686_09650 0.37 +1.6
1,971,736 - OH686_09650 0.39 +1.2
1,971,736 - OH686_09650 0.39 +2.0
1,971,758 - OH686_09650 0.41 +0.6
1,971,897 + OH686_09650 0.48 +1.8
1,971,897 + OH686_09650 0.48 +0.2
1,971,897 + OH686_09650 0.48 +1.3
1,971,897 + OH686_09650 0.48 +0.3
1,971,897 + OH686_09650 0.48 +2.0
1,971,897 + OH686_09650 0.48 +1.4
1,971,898 - OH686_09650 0.48 +0.9
1,971,898 - OH686_09650 0.48 +2.0
1,971,898 - OH686_09650 0.48 +2.2
1,971,898 - OH686_09650 0.48 +1.3
1,971,898 - OH686_09650 0.48 +1.8
1,971,898 - OH686_09650 0.48 +1.9
1,971,900 + OH686_09650 0.49 +3.0
1,971,900 + OH686_09650 0.49 +2.6
1,971,900 + OH686_09650 0.49 +0.7
1,971,900 + OH686_09650 0.49 +0.4
1,971,900 + OH686_09650 0.49 +1.6
1,971,901 - OH686_09650 0.49 +1.7
1,971,901 - OH686_09650 0.49 +1.4
1,971,901 - OH686_09650 0.49 +1.8
1,971,954 + OH686_09650 0.52 +1.7
1,971,955 - OH686_09650 0.52 +0.4
1,971,963 + OH686_09650 0.52 -0.1
1,971,963 + OH686_09650 0.52 +2.0
1,971,963 + OH686_09650 0.52 +1.3
1,971,963 + OH686_09650 0.52 +1.9
1,971,963 + OH686_09650 0.52 +1.0
1,971,964 - OH686_09650 0.52 +0.4
1,971,964 - OH686_09650 0.52 +2.8
1,971,964 - OH686_09650 0.52 +1.8
1,971,964 - OH686_09650 0.52 +1.9
1,972,029 + OH686_09650 0.56 +0.7
1,972,029 + OH686_09650 0.56 +0.7
1,972,029 + OH686_09650 0.56 +2.6
1,972,029 + OH686_09650 0.56 +2.0
1,972,029 + OH686_09650 0.56 +3.4
1,972,029 + OH686_09650 0.56 +1.8
1,972,029 + OH686_09650 0.56 +1.9
1,972,029 + OH686_09650 0.56 +1.3
1,972,029 + OH686_09650 0.56 +1.2
1,972,029 + OH686_09650 0.56 +2.3
1,972,029 + OH686_09650 0.56 +1.1
1,972,029 + OH686_09650 0.56 +1.3
1,972,029 + OH686_09650 0.56 +1.4
1,972,030 - OH686_09650 0.56 +0.8
1,972,030 - OH686_09650 0.56 +0.6
1,972,030 - OH686_09650 0.56 +1.7
1,972,030 - OH686_09650 0.56 +1.8
1,972,030 - OH686_09650 0.56 +1.4
1,972,030 - OH686_09650 0.56 +1.9
1,972,030 - OH686_09650 0.56 +1.0
1,972,030 - OH686_09650 0.56 +2.2
1,972,030 - OH686_09650 0.56 +0.2
1,972,032 + OH686_09650 0.56 +1.3
1,972,032 + OH686_09650 0.56 +1.8
1,972,033 - OH686_09650 0.56 +2.7
1,972,033 - OH686_09650 0.56 +1.0
1,972,053 + OH686_09650 0.57 +1.5
1,972,053 + OH686_09650 0.57 +2.3
1,972,080 + OH686_09650 0.59 +0.8
1,972,080 + OH686_09650 0.59 +2.4
1,972,081 - OH686_09650 0.59 +1.2
1,972,138 - OH686_09650 0.62 +2.0
1,972,138 - OH686_09650 0.62 +3.2
1,972,138 - OH686_09650 0.62 +1.8
1,972,138 - OH686_09650 0.62 +0.9
1,972,138 - OH686_09650 0.62 -0.4
1,972,138 - OH686_09650 0.62 +1.4
1,972,228 - OH686_09650 0.67 +2.4
1,972,228 - OH686_09650 0.67 +3.0
1,972,255 - OH686_09650 0.69 +1.9
1,972,255 - OH686_09650 0.69 +1.3
1,972,315 - OH686_09650 0.72 +0.9
1,972,315 - OH686_09650 0.72 +1.6
1,972,486 - OH686_09650 0.82 +2.5
1,972,486 - OH686_09650 0.82 +1.6
1,972,534 - OH686_09650 0.85 +1.9
1,972,534 - OH686_09650 0.85 +1.6
1,972,534 - OH686_09650 0.85 +0.8
1,972,534 - OH686_09650 0.85 +0.2
1,972,534 - OH686_09650 0.85 +1.5
1,972,552 - OH686_09650 0.86 +1.0
1,972,662 + +3.0
1,972,663 - +0.6
1,972,740 + -0.4
1,972,740 + +1.0
1,972,740 + +1.7
1,972,740 + -1.0
1,972,740 + +0.8
1,972,740 + +2.6
1,972,740 + +0.2
1,972,741 - +1.8
1,972,741 - +2.0
1,972,741 - +1.7
1,972,888 + OH686_09655 0.36 +1.4
1,972,888 + OH686_09655 0.36 +1.2
1,972,888 + OH686_09655 0.36 +1.9
1,972,889 - OH686_09655 0.37 +0.1
1,972,889 - OH686_09655 0.37 -0.8
1,972,890 + OH686_09655 0.38 +0.7
1,972,891 - OH686_09655 0.39 +0.4
1,972,891 - OH686_09655 0.39 -0.1
1,972,891 - OH686_09655 0.39 +0.2
1,972,891 - OH686_09655 0.39 +0.3
1,972,908 + OH686_09655 0.54 +1.1
1,972,909 - OH686_09655 0.54 -0.8
1,972,958 + +0.7
1,972,958 + -0.0
1,972,959 - -0.1
1,972,959 - -1.6
1,972,959 - -0.8
1,972,959 - +0.1
1,972,959 - +0.2

Or see this region's nucleotide sequence