Strain Fitness in Pseudomonas sp. S08-1 around OH686_09535

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09530 and OH686_09535 are separated by 44 nucleotidesOH686_09535 and OH686_09540 are separated by 14 nucleotides OH686_09530: OH686_09530 - Predicted signal transduction protein, at 1,945,025 to 1,946,545 _09530 OH686_09535: OH686_09535 - Thiosulfate sulfurtransferase, rhodanese , at 1,946,590 to 1,947,405 _09535 OH686_09540: OH686_09540 - phosphatidylserine decarboxylase, at 1,947,420 to 1,948,280 _09540 Position (kb) 1946 1947 1948Strain fitness (log2 ratio) -2 -1 0 1 2at 1945.874 kb on + strand, within OH686_09530at 1945.874 kb on + strand, within OH686_09530at 1945.874 kb on + strand, within OH686_09530at 1945.874 kb on + strand, within OH686_09530at 1945.874 kb on + strand, within OH686_09530at 1945.874 kb on + strand, within OH686_09530at 1945.874 kb on + strand, within OH686_09530at 1945.874 kb on + strand, within OH686_09530at 1945.874 kb on + strand, within OH686_09530at 1945.874 kb on + strand, within OH686_09530at 1945.875 kb on - strand, within OH686_09530at 1945.875 kb on - strand, within OH686_09530at 1945.875 kb on - strand, within OH686_09530at 1945.875 kb on - strand, within OH686_09530at 1945.875 kb on - strand, within OH686_09530at 1945.875 kb on - strand, within OH686_09530at 1945.944 kb on - strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.959 kb on + strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1945.960 kb on - strand, within OH686_09530at 1946.247 kb on + strand, within OH686_09530at 1946.247 kb on + strand, within OH686_09530at 1946.247 kb on + strand, within OH686_09530at 1946.248 kb on - strand, within OH686_09530at 1946.346 kb on + strand, within OH686_09530at 1946.346 kb on + strand, within OH686_09530at 1946.347 kb on - strand, within OH686_09530at 1946.543 kb on + strandat 1946.543 kb on + strandat 1946.543 kb on + strandat 1946.543 kb on + strandat 1946.543 kb on + strandat 1946.544 kb on - strandat 1946.544 kb on - strandat 1946.544 kb on - strandat 1946.555 kb on + strandat 1946.695 kb on + strand, within OH686_09535at 1946.695 kb on + strand, within OH686_09535at 1946.695 kb on + strand, within OH686_09535at 1946.695 kb on + strand, within OH686_09535at 1946.711 kb on + strand, within OH686_09535at 1946.711 kb on + strand, within OH686_09535at 1946.711 kb on + strand, within OH686_09535at 1946.711 kb on + strand, within OH686_09535at 1946.711 kb on + strand, within OH686_09535at 1946.711 kb on + strand, within OH686_09535at 1946.711 kb on + strand, within OH686_09535at 1946.711 kb on + strand, within OH686_09535at 1946.712 kb on - strand, within OH686_09535at 1946.712 kb on - strand, within OH686_09535at 1946.712 kb on - strand, within OH686_09535at 1946.712 kb on - strand, within OH686_09535at 1946.839 kb on + strand, within OH686_09535at 1946.839 kb on + strand, within OH686_09535at 1946.839 kb on + strand, within OH686_09535at 1946.839 kb on + strand, within OH686_09535at 1946.839 kb on + strand, within OH686_09535at 1946.840 kb on - strand, within OH686_09535at 1946.840 kb on - strand, within OH686_09535at 1946.848 kb on + strand, within OH686_09535at 1946.848 kb on + strand, within OH686_09535at 1946.848 kb on + strand, within OH686_09535at 1946.848 kb on + strand, within OH686_09535at 1946.848 kb on + strand, within OH686_09535at 1946.848 kb on + strand, within OH686_09535at 1946.848 kb on + strand, within OH686_09535at 1946.848 kb on + strand, within OH686_09535at 1946.848 kb on + strand, within OH686_09535at 1946.849 kb on - strand, within OH686_09535at 1946.849 kb on - strand, within OH686_09535at 1946.849 kb on - strand, within OH686_09535at 1946.849 kb on - strand, within OH686_09535at 1947.046 kb on + strand, within OH686_09535at 1947.047 kb on - strand, within OH686_09535at 1947.047 kb on - strand, within OH686_09535at 1947.047 kb on - strand, within OH686_09535at 1947.047 kb on - strand, within OH686_09535at 1947.047 kb on - strand, within OH686_09535at 1947.230 kb on + strand, within OH686_09535at 1947.230 kb on + strand, within OH686_09535at 1947.230 kb on + strand, within OH686_09535at 1947.231 kb on - strand, within OH686_09535at 1947.231 kb on - strand, within OH686_09535at 1947.307 kb on + strand, within OH686_09535at 1947.307 kb on + strand, within OH686_09535at 1947.307 kb on + strand, within OH686_09535at 1947.307 kb on + strand, within OH686_09535at 1947.307 kb on + strand, within OH686_09535at 1947.307 kb on + strand, within OH686_09535at 1947.307 kb on + strand, within OH686_09535at 1947.307 kb on + strand, within OH686_09535at 1947.308 kb on - strand, within OH686_09535at 1947.308 kb on - strand, within OH686_09535at 1947.349 kb on + strandat 1947.349 kb on + strandat 1947.349 kb on + strandat 1947.350 kb on - strandat 1947.350 kb on - strandat 1947.350 kb on - strandat 1947.413 kb on - strandat 1947.415 kb on + strandat 1947.415 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,945,874 + OH686_09530 0.56 -0.0
1,945,874 + OH686_09530 0.56 +1.0
1,945,874 + OH686_09530 0.56 -1.8
1,945,874 + OH686_09530 0.56 +0.2
1,945,874 + OH686_09530 0.56 +0.0
1,945,874 + OH686_09530 0.56 +0.7
1,945,874 + OH686_09530 0.56 -0.3
1,945,874 + OH686_09530 0.56 -0.8
1,945,874 + OH686_09530 0.56 +0.7
1,945,874 + OH686_09530 0.56 +0.6
1,945,875 - OH686_09530 0.56 -0.6
1,945,875 - OH686_09530 0.56 -0.8
1,945,875 - OH686_09530 0.56 -1.1
1,945,875 - OH686_09530 0.56 +0.2
1,945,875 - OH686_09530 0.56 +1.0
1,945,875 - OH686_09530 0.56 -0.4
1,945,944 - OH686_09530 0.60 -0.5
1,945,959 + OH686_09530 0.61 +0.6
1,945,959 + OH686_09530 0.61 -0.6
1,945,959 + OH686_09530 0.61 -0.1
1,945,959 + OH686_09530 0.61 -0.2
1,945,959 + OH686_09530 0.61 -0.6
1,945,959 + OH686_09530 0.61 -0.4
1,945,959 + OH686_09530 0.61 +1.0
1,945,959 + OH686_09530 0.61 +0.2
1,945,959 + OH686_09530 0.61 +0.5
1,945,959 + OH686_09530 0.61 +0.3
1,945,959 + OH686_09530 0.61 +1.0
1,945,959 + OH686_09530 0.61 -1.7
1,945,960 - OH686_09530 0.61 +0.3
1,945,960 - OH686_09530 0.61 +0.5
1,945,960 - OH686_09530 0.61 -0.8
1,945,960 - OH686_09530 0.61 -0.7
1,945,960 - OH686_09530 0.61 +0.9
1,945,960 - OH686_09530 0.61 +0.5
1,945,960 - OH686_09530 0.61 +0.0
1,945,960 - OH686_09530 0.61 -0.2
1,945,960 - OH686_09530 0.61 -0.4
1,945,960 - OH686_09530 0.61 +1.4
1,945,960 - OH686_09530 0.61 -1.3
1,945,960 - OH686_09530 0.61 +1.9
1,946,247 + OH686_09530 0.80 +0.6
1,946,247 + OH686_09530 0.80 +0.3
1,946,247 + OH686_09530 0.80 +0.1
1,946,248 - OH686_09530 0.80 -0.3
1,946,346 + OH686_09530 0.87 -0.4
1,946,346 + OH686_09530 0.87 +1.0
1,946,347 - OH686_09530 0.87 -0.9
1,946,543 + +0.7
1,946,543 + +0.1
1,946,543 + +1.2
1,946,543 + -0.3
1,946,543 + +0.2
1,946,544 - -0.7
1,946,544 - +0.4
1,946,544 - -0.9
1,946,555 + -0.3
1,946,695 + OH686_09535 0.13 -1.1
1,946,695 + OH686_09535 0.13 -2.1
1,946,695 + OH686_09535 0.13 +0.3
1,946,695 + OH686_09535 0.13 -0.3
1,946,711 + OH686_09535 0.15 +0.6
1,946,711 + OH686_09535 0.15 +1.2
1,946,711 + OH686_09535 0.15 -0.3
1,946,711 + OH686_09535 0.15 +0.0
1,946,711 + OH686_09535 0.15 -0.9
1,946,711 + OH686_09535 0.15 -0.6
1,946,711 + OH686_09535 0.15 +0.4
1,946,711 + OH686_09535 0.15 -0.4
1,946,712 - OH686_09535 0.15 -0.3
1,946,712 - OH686_09535 0.15 +1.2
1,946,712 - OH686_09535 0.15 -1.0
1,946,712 - OH686_09535 0.15 +0.1
1,946,839 + OH686_09535 0.31 +0.3
1,946,839 + OH686_09535 0.31 -0.1
1,946,839 + OH686_09535 0.31 -0.7
1,946,839 + OH686_09535 0.31 -1.3
1,946,839 + OH686_09535 0.31 -0.2
1,946,840 - OH686_09535 0.31 -0.9
1,946,840 - OH686_09535 0.31 +0.3
1,946,848 + OH686_09535 0.32 +1.4
1,946,848 + OH686_09535 0.32 -0.2
1,946,848 + OH686_09535 0.32 +0.2
1,946,848 + OH686_09535 0.32 -0.4
1,946,848 + OH686_09535 0.32 -0.4
1,946,848 + OH686_09535 0.32 +0.6
1,946,848 + OH686_09535 0.32 -0.8
1,946,848 + OH686_09535 0.32 +0.2
1,946,848 + OH686_09535 0.32 +0.1
1,946,849 - OH686_09535 0.32 -1.5
1,946,849 - OH686_09535 0.32 -0.2
1,946,849 - OH686_09535 0.32 +1.3
1,946,849 - OH686_09535 0.32 +0.5
1,947,046 + OH686_09535 0.56 +0.3
1,947,047 - OH686_09535 0.56 +0.3
1,947,047 - OH686_09535 0.56 -0.7
1,947,047 - OH686_09535 0.56 +0.5
1,947,047 - OH686_09535 0.56 +0.4
1,947,047 - OH686_09535 0.56 +0.2
1,947,230 + OH686_09535 0.78 +0.0
1,947,230 + OH686_09535 0.78 -0.9
1,947,230 + OH686_09535 0.78 +0.7
1,947,231 - OH686_09535 0.79 -1.0
1,947,231 - OH686_09535 0.79 -0.6
1,947,307 + OH686_09535 0.88 +0.4
1,947,307 + OH686_09535 0.88 -0.3
1,947,307 + OH686_09535 0.88 -0.4
1,947,307 + OH686_09535 0.88 +0.0
1,947,307 + OH686_09535 0.88 +0.0
1,947,307 + OH686_09535 0.88 -0.6
1,947,307 + OH686_09535 0.88 +0.1
1,947,307 + OH686_09535 0.88 +1.2
1,947,308 - OH686_09535 0.88 +0.5
1,947,308 - OH686_09535 0.88 +0.7
1,947,349 + +1.4
1,947,349 + +1.2
1,947,349 + +0.3
1,947,350 - +0.0
1,947,350 - -1.1
1,947,350 - +0.0
1,947,413 - -1.0
1,947,415 + -0.1
1,947,415 + -0.1

Or see this region's nucleotide sequence