Strain Fitness in Pseudomonas sp. S08-1 around OH686_09470

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09465 and OH686_09470 are separated by 12 nucleotidesOH686_09470 and OH686_09475 are separated by 98 nucleotides OH686_09465: OH686_09465 - GTP-binding protein HflX, at 1,931,352 to 1,932,653 _09465 OH686_09470: OH686_09470 - RNA chaperone Hfq, at 1,932,666 to 1,932,920 _09470 OH686_09475: OH686_09475 - tRNA dimethylallyltransferase, at 1,933,019 to 1,933,990 _09475 Position (kb) 1932 1933Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.704 kb on + strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.705 kb on - strand, within OH686_09465at 1931.706 kb on + strand, within OH686_09465at 1931.706 kb on + strand, within OH686_09465at 1931.706 kb on + strand, within OH686_09465at 1931.706 kb on + strand, within OH686_09465at 1931.706 kb on + strand, within OH686_09465at 1931.706 kb on + strand, within OH686_09465at 1931.707 kb on - strand, within OH686_09465at 1931.707 kb on - strand, within OH686_09465at 1931.707 kb on - strand, within OH686_09465at 1931.707 kb on - strand, within OH686_09465at 1931.707 kb on - strand, within OH686_09465at 1931.707 kb on - strand, within OH686_09465at 1931.707 kb on - strand, within OH686_09465at 1931.983 kb on + strand, within OH686_09465at 1931.983 kb on + strand, within OH686_09465at 1931.983 kb on + strand, within OH686_09465at 1931.983 kb on + strand, within OH686_09465at 1931.983 kb on + strand, within OH686_09465at 1931.984 kb on - strand, within OH686_09465at 1931.984 kb on - strand, within OH686_09465at 1931.984 kb on - strand, within OH686_09465at 1931.984 kb on - strand, within OH686_09465at 1931.984 kb on - strand, within OH686_09465at 1932.038 kb on - strand, within OH686_09465at 1932.038 kb on - strand, within OH686_09465at 1932.495 kb on - strand, within OH686_09465at 1932.664 kb on + strandat 1932.664 kb on + strandat 1932.664 kb on + strandat 1932.665 kb on - strandat 1932.665 kb on - strandat 1932.665 kb on - strandat 1932.708 kb on - strand, within OH686_09470at 1932.708 kb on - strand, within OH686_09470at 1932.708 kb on - strand, within OH686_09470at 1932.948 kb on - strandat 1932.967 kb on - strandat 1932.996 kb on - strandat 1932.996 kb on - strandat 1932.996 kb on - strandat 1933.007 kb on - strandat 1933.007 kb on - strandat 1933.025 kb on + strandat 1933.025 kb on + strandat 1933.026 kb on - strandat 1933.044 kb on + strandat 1933.045 kb on - strandat 1933.054 kb on + strandat 1933.200 kb on + strand, within OH686_09475at 1933.208 kb on + strand, within OH686_09475at 1933.209 kb on - strand, within OH686_09475at 1933.384 kb on + strand, within OH686_09475at 1933.384 kb on + strand, within OH686_09475at 1933.384 kb on + strand, within OH686_09475at 1933.384 kb on + strand, within OH686_09475at 1933.384 kb on + strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.386 kb on + strand, within OH686_09475at 1933.423 kb on + strand, within OH686_09475at 1933.424 kb on - strand, within OH686_09475at 1933.481 kb on + strand, within OH686_09475at 1933.481 kb on + strand, within OH686_09475at 1933.481 kb on + strand, within OH686_09475at 1933.481 kb on + strand, within OH686_09475at 1933.481 kb on + strand, within OH686_09475at 1933.482 kb on - strand, within OH686_09475at 1933.482 kb on - strand, within OH686_09475at 1933.482 kb on - strand, within OH686_09475at 1933.482 kb on - strand, within OH686_09475at 1933.640 kb on - strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.669 kb on - strand, within OH686_09475at 1933.669 kb on - strand, within OH686_09475at 1933.669 kb on - strand, within OH686_09475at 1933.671 kb on + strand, within OH686_09475at 1933.671 kb on + strand, within OH686_09475at 1933.672 kb on - strand, within OH686_09475at 1933.672 kb on - strand, within OH686_09475at 1933.767 kb on + strand, within OH686_09475at 1933.767 kb on + strand, within OH686_09475at 1933.768 kb on - strand, within OH686_09475at 1933.768 kb on - strand, within OH686_09475

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,931,704 + OH686_09465 0.27 +0.9
1,931,704 + OH686_09465 0.27 +0.4
1,931,704 + OH686_09465 0.27 +1.1
1,931,704 + OH686_09465 0.27 +1.2
1,931,704 + OH686_09465 0.27 +0.1
1,931,704 + OH686_09465 0.27 -0.8
1,931,704 + OH686_09465 0.27 +0.9
1,931,704 + OH686_09465 0.27 +0.2
1,931,704 + OH686_09465 0.27 +1.0
1,931,704 + OH686_09465 0.27 +0.3
1,931,704 + OH686_09465 0.27 -0.5
1,931,704 + OH686_09465 0.27 +1.1
1,931,704 + OH686_09465 0.27 +0.4
1,931,704 + OH686_09465 0.27 +1.0
1,931,705 - OH686_09465 0.27 +0.4
1,931,705 - OH686_09465 0.27 +0.1
1,931,705 - OH686_09465 0.27 +0.4
1,931,705 - OH686_09465 0.27 +1.2
1,931,705 - OH686_09465 0.27 -0.1
1,931,705 - OH686_09465 0.27 +0.1
1,931,705 - OH686_09465 0.27 +0.9
1,931,705 - OH686_09465 0.27 -0.5
1,931,705 - OH686_09465 0.27 +0.7
1,931,705 - OH686_09465 0.27 -0.1
1,931,705 - OH686_09465 0.27 +0.6
1,931,705 - OH686_09465 0.27 +0.2
1,931,705 - OH686_09465 0.27 +0.9
1,931,705 - OH686_09465 0.27 -1.1
1,931,705 - OH686_09465 0.27 -0.4
1,931,705 - OH686_09465 0.27 -0.2
1,931,705 - OH686_09465 0.27 -1.7
1,931,705 - OH686_09465 0.27 +0.8
1,931,705 - OH686_09465 0.27 +0.4
1,931,705 - OH686_09465 0.27 +1.0
1,931,705 - OH686_09465 0.27 -0.0
1,931,705 - OH686_09465 0.27 +0.4
1,931,705 - OH686_09465 0.27 +0.3
1,931,705 - OH686_09465 0.27 -1.4
1,931,706 + OH686_09465 0.27 +0.7
1,931,706 + OH686_09465 0.27 -0.2
1,931,706 + OH686_09465 0.27 -0.1
1,931,706 + OH686_09465 0.27 +0.2
1,931,706 + OH686_09465 0.27 +0.1
1,931,706 + OH686_09465 0.27 -0.2
1,931,707 - OH686_09465 0.27 -1.0
1,931,707 - OH686_09465 0.27 -1.6
1,931,707 - OH686_09465 0.27 +0.4
1,931,707 - OH686_09465 0.27 +0.0
1,931,707 - OH686_09465 0.27 -0.8
1,931,707 - OH686_09465 0.27 +0.1
1,931,707 - OH686_09465 0.27 +0.8
1,931,983 + OH686_09465 0.48 +0.7
1,931,983 + OH686_09465 0.48 +0.1
1,931,983 + OH686_09465 0.48 +0.3
1,931,983 + OH686_09465 0.48 +0.7
1,931,983 + OH686_09465 0.48 +1.6
1,931,984 - OH686_09465 0.49 +1.2
1,931,984 - OH686_09465 0.49 +0.1
1,931,984 - OH686_09465 0.49 -1.0
1,931,984 - OH686_09465 0.49 +0.3
1,931,984 - OH686_09465 0.49 -0.4
1,932,038 - OH686_09465 0.53 -0.2
1,932,038 - OH686_09465 0.53 +0.5
1,932,495 - OH686_09465 0.88 +0.4
1,932,664 + +3.2
1,932,664 + +1.6
1,932,664 + +1.0
1,932,665 - -0.1
1,932,665 - +0.3
1,932,665 - -0.1
1,932,708 - OH686_09470 0.16 +3.3
1,932,708 - OH686_09470 0.16 +1.9
1,932,708 - OH686_09470 0.16 +1.6
1,932,948 - +0.9
1,932,967 - -2.9
1,932,996 - -2.4
1,932,996 - -1.5
1,932,996 - -2.3
1,933,007 - -1.3
1,933,007 - +0.0
1,933,025 + +1.6
1,933,025 + +1.7
1,933,026 - -1.9
1,933,044 + +1.6
1,933,045 - +0.0
1,933,054 + +0.0
1,933,200 + OH686_09475 0.19 +0.0
1,933,208 + OH686_09475 0.19 -0.3
1,933,209 - OH686_09475 0.20 -0.3
1,933,384 + OH686_09475 0.38 +0.0
1,933,384 + OH686_09475 0.38 -0.8
1,933,384 + OH686_09475 0.38 +0.0
1,933,384 + OH686_09475 0.38 -1.0
1,933,384 + OH686_09475 0.38 -1.6
1,933,385 - OH686_09475 0.38 -1.0
1,933,385 - OH686_09475 0.38 -0.8
1,933,385 - OH686_09475 0.38 +0.0
1,933,385 - OH686_09475 0.38 -0.6
1,933,385 - OH686_09475 0.38 -0.6
1,933,385 - OH686_09475 0.38 -1.0
1,933,385 - OH686_09475 0.38 +0.0
1,933,385 - OH686_09475 0.38 +0.0
1,933,385 - OH686_09475 0.38 -1.0
1,933,385 - OH686_09475 0.38 +0.0
1,933,386 + OH686_09475 0.38 +0.0
1,933,423 + OH686_09475 0.42 -0.3
1,933,424 - OH686_09475 0.42 -0.3
1,933,481 + OH686_09475 0.48 -1.0
1,933,481 + OH686_09475 0.48 -0.3
1,933,481 + OH686_09475 0.48 -0.3
1,933,481 + OH686_09475 0.48 -1.0
1,933,481 + OH686_09475 0.48 +0.0
1,933,482 - OH686_09475 0.48 -1.1
1,933,482 - OH686_09475 0.48 +0.0
1,933,482 - OH686_09475 0.48 +0.0
1,933,482 - OH686_09475 0.48 -1.3
1,933,640 - OH686_09475 0.64 +0.0
1,933,668 + OH686_09475 0.67 -1.3
1,933,668 + OH686_09475 0.67 -0.3
1,933,668 + OH686_09475 0.67 +0.0
1,933,668 + OH686_09475 0.67 -0.3
1,933,668 + OH686_09475 0.67 +0.0
1,933,668 + OH686_09475 0.67 +0.0
1,933,669 - OH686_09475 0.67 -0.3
1,933,669 - OH686_09475 0.67 -0.8
1,933,669 - OH686_09475 0.67 +0.0
1,933,671 + OH686_09475 0.67 -0.3
1,933,671 + OH686_09475 0.67 -0.8
1,933,672 - OH686_09475 0.67 -1.1
1,933,672 - OH686_09475 0.67 +0.0
1,933,767 + OH686_09475 0.77 +0.0
1,933,767 + OH686_09475 0.77 +0.0
1,933,768 - OH686_09475 0.77 -0.3
1,933,768 - OH686_09475 0.77 -0.6

Or see this region's nucleotide sequence