Strain Fitness in Pseudomonas sp. S08-1 around OH686_08035

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08025 and OH686_08030 are separated by 1 nucleotidesOH686_08030 and OH686_08035 are separated by 32 nucleotidesOH686_08035 and OH686_08040 overlap by 4 nucleotidesOH686_08040 and OH686_08045 are separated by 148 nucleotides OH686_08025: OH686_08025 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,632,758 to 1,633,657 _08025 OH686_08030: OH686_08030 - Carbonic anhydrase, beta class , at 1,633,659 to 1,634,303 _08030 OH686_08035: OH686_08035 - ribosomal-protein-alanine acetyltransferase, at 1,634,336 to 1,634,788 _08035 OH686_08040: OH686_08040 - hypothetical protein, at 1,634,785 to 1,635,582 _08040 OH686_08045: OH686_08045 - hypothetical protein, at 1,635,731 to 1,636,981 _08045 Position (kb) 1634 1635Strain fitness (log2 ratio) -2 -1 0 1 2at 1633.395 kb on + strand, within OH686_08025at 1633.395 kb on + strand, within OH686_08025at 1633.395 kb on + strand, within OH686_08025at 1633.395 kb on + strand, within OH686_08025at 1633.396 kb on - strand, within OH686_08025at 1633.410 kb on + strand, within OH686_08025at 1633.410 kb on + strand, within OH686_08025at 1633.410 kb on + strand, within OH686_08025at 1633.410 kb on + strand, within OH686_08025at 1633.410 kb on + strand, within OH686_08025at 1633.410 kb on + strand, within OH686_08025at 1633.410 kb on + strand, within OH686_08025at 1633.411 kb on - strand, within OH686_08025at 1633.411 kb on - strand, within OH686_08025at 1633.411 kb on - strand, within OH686_08025at 1633.411 kb on - strand, within OH686_08025at 1633.411 kb on - strand, within OH686_08025at 1633.411 kb on - strand, within OH686_08025at 1633.470 kb on + strand, within OH686_08025at 1633.470 kb on + strand, within OH686_08025at 1633.470 kb on + strand, within OH686_08025at 1633.584 kb on - strandat 1633.688 kb on - strandat 1633.759 kb on + strand, within OH686_08030at 1633.759 kb on + strand, within OH686_08030at 1633.759 kb on + strand, within OH686_08030at 1633.759 kb on + strand, within OH686_08030at 1633.759 kb on + strand, within OH686_08030at 1633.759 kb on + strand, within OH686_08030at 1633.760 kb on - strand, within OH686_08030at 1633.760 kb on - strand, within OH686_08030at 1633.760 kb on - strand, within OH686_08030at 1633.760 kb on - strand, within OH686_08030at 1633.760 kb on - strand, within OH686_08030at 1633.921 kb on + strand, within OH686_08030at 1633.921 kb on + strand, within OH686_08030at 1633.921 kb on + strand, within OH686_08030at 1633.922 kb on - strand, within OH686_08030at 1633.922 kb on - strand, within OH686_08030at 1633.922 kb on - strand, within OH686_08030at 1633.924 kb on + strand, within OH686_08030at 1633.924 kb on + strand, within OH686_08030at 1633.924 kb on + strand, within OH686_08030at 1633.925 kb on - strand, within OH686_08030at 1633.925 kb on - strand, within OH686_08030at 1633.925 kb on - strand, within OH686_08030at 1633.925 kb on - strand, within OH686_08030at 1633.925 kb on - strand, within OH686_08030at 1633.925 kb on - strand, within OH686_08030at 1634.126 kb on + strand, within OH686_08030at 1634.337 kb on + strandat 1634.337 kb on + strandat 1634.338 kb on - strandat 1634.338 kb on - strandat 1634.360 kb on + strandat 1634.394 kb on + strand, within OH686_08035at 1634.397 kb on + strand, within OH686_08035at 1634.397 kb on + strand, within OH686_08035at 1634.397 kb on + strand, within OH686_08035at 1634.397 kb on + strand, within OH686_08035at 1634.397 kb on + strand, within OH686_08035at 1634.398 kb on - strand, within OH686_08035at 1634.398 kb on - strand, within OH686_08035at 1634.398 kb on - strand, within OH686_08035at 1634.440 kb on - strand, within OH686_08035at 1634.440 kb on - strand, within OH686_08035at 1634.440 kb on - strand, within OH686_08035at 1634.440 kb on - strand, within OH686_08035at 1634.664 kb on + strand, within OH686_08035at 1634.665 kb on - strand, within OH686_08035at 1635.684 kb on + strandat 1635.684 kb on + strandat 1635.684 kb on + strandat 1635.684 kb on + strandat 1635.684 kb on + strandat 1635.684 kb on + strandat 1635.684 kb on + strandat 1635.684 kb on + strandat 1635.685 kb on - strandat 1635.685 kb on - strandat 1635.685 kb on - strandat 1635.685 kb on - strandat 1635.685 kb on - strandat 1635.699 kb on + strandat 1635.699 kb on + strandat 1635.699 kb on + strandat 1635.699 kb on + strandat 1635.699 kb on + strandat 1635.699 kb on + strandat 1635.699 kb on + strandat 1635.699 kb on + strandat 1635.699 kb on + strandat 1635.699 kb on + strandat 1635.699 kb on + strandat 1635.700 kb on - strandat 1635.700 kb on - strandat 1635.700 kb on - strandat 1635.700 kb on - strandat 1635.700 kb on - strandat 1635.700 kb on - strandat 1635.700 kb on - strandat 1635.701 kb on + strandat 1635.701 kb on + strandat 1635.701 kb on + strandat 1635.702 kb on - strandat 1635.702 kb on - strandat 1635.702 kb on - strandat 1635.702 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,633,395 + OH686_08025 0.71 +1.0
1,633,395 + OH686_08025 0.71 +0.3
1,633,395 + OH686_08025 0.71 -1.2
1,633,395 + OH686_08025 0.71 +0.0
1,633,396 - OH686_08025 0.71 -0.3
1,633,410 + OH686_08025 0.72 +1.0
1,633,410 + OH686_08025 0.72 -1.0
1,633,410 + OH686_08025 0.72 +0.9
1,633,410 + OH686_08025 0.72 +0.4
1,633,410 + OH686_08025 0.72 +0.6
1,633,410 + OH686_08025 0.72 -1.8
1,633,410 + OH686_08025 0.72 +0.1
1,633,411 - OH686_08025 0.73 +0.1
1,633,411 - OH686_08025 0.73 +0.9
1,633,411 - OH686_08025 0.73 -0.2
1,633,411 - OH686_08025 0.73 -0.0
1,633,411 - OH686_08025 0.73 -0.6
1,633,411 - OH686_08025 0.73 +0.3
1,633,470 + OH686_08025 0.79 -0.4
1,633,470 + OH686_08025 0.79 -0.4
1,633,470 + OH686_08025 0.79 +0.3
1,633,584 - +0.1
1,633,688 - -1.4
1,633,759 + OH686_08030 0.16 -0.2
1,633,759 + OH686_08030 0.16 -0.6
1,633,759 + OH686_08030 0.16 -0.1
1,633,759 + OH686_08030 0.16 -1.5
1,633,759 + OH686_08030 0.16 -0.1
1,633,759 + OH686_08030 0.16 +0.5
1,633,760 - OH686_08030 0.16 +0.2
1,633,760 - OH686_08030 0.16 +0.0
1,633,760 - OH686_08030 0.16 +0.3
1,633,760 - OH686_08030 0.16 +0.3
1,633,760 - OH686_08030 0.16 +0.4
1,633,921 + OH686_08030 0.41 +0.5
1,633,921 + OH686_08030 0.41 +0.6
1,633,921 + OH686_08030 0.41 -0.2
1,633,922 - OH686_08030 0.41 +0.3
1,633,922 - OH686_08030 0.41 +1.0
1,633,922 - OH686_08030 0.41 -0.4
1,633,924 + OH686_08030 0.41 -0.1
1,633,924 + OH686_08030 0.41 +0.5
1,633,924 + OH686_08030 0.41 +0.8
1,633,925 - OH686_08030 0.41 -0.5
1,633,925 - OH686_08030 0.41 +0.1
1,633,925 - OH686_08030 0.41 -0.1
1,633,925 - OH686_08030 0.41 +0.0
1,633,925 - OH686_08030 0.41 +0.4
1,633,925 - OH686_08030 0.41 -0.0
1,634,126 + OH686_08030 0.72 +0.5
1,634,337 + -0.2
1,634,337 + +0.9
1,634,338 - -1.6
1,634,338 - +0.2
1,634,360 + +0.9
1,634,394 + OH686_08035 0.13 +0.0
1,634,397 + OH686_08035 0.13 +0.2
1,634,397 + OH686_08035 0.13 +1.3
1,634,397 + OH686_08035 0.13 +0.2
1,634,397 + OH686_08035 0.13 +0.7
1,634,397 + OH686_08035 0.13 +0.3
1,634,398 - OH686_08035 0.14 +1.9
1,634,398 - OH686_08035 0.14 +0.7
1,634,398 - OH686_08035 0.14 -0.1
1,634,440 - OH686_08035 0.23 +0.8
1,634,440 - OH686_08035 0.23 +2.2
1,634,440 - OH686_08035 0.23 -0.3
1,634,440 - OH686_08035 0.23 +0.3
1,634,664 + OH686_08035 0.72 +0.9
1,634,665 - OH686_08035 0.73 +0.3
1,635,684 + -0.1
1,635,684 + +0.0
1,635,684 + +0.5
1,635,684 + +1.5
1,635,684 + +0.8
1,635,684 + -0.1
1,635,684 + +0.4
1,635,684 + +0.2
1,635,685 - +1.1
1,635,685 - +0.2
1,635,685 - +0.0
1,635,685 - +1.2
1,635,685 - -1.4
1,635,699 + +0.4
1,635,699 + +1.8
1,635,699 + -0.9
1,635,699 + +0.3
1,635,699 + +0.5
1,635,699 + +0.8
1,635,699 + -0.3
1,635,699 + -0.9
1,635,699 + -1.2
1,635,699 + -0.9
1,635,699 + +1.0
1,635,700 - -0.6
1,635,700 - +0.2
1,635,700 - -0.3
1,635,700 - +0.1
1,635,700 - +1.0
1,635,700 - +0.0
1,635,700 - -1.4
1,635,701 + -0.4
1,635,701 + +0.2
1,635,701 + +0.0
1,635,702 - +0.2
1,635,702 - -0.7
1,635,702 - +1.2
1,635,702 - +0.3

Or see this region's nucleotide sequence