Strain Fitness in Pseudomonas sp. S08-1 around OH686_07495

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_07485 and OH686_07490 overlap by 4 nucleotidesOH686_07490 and OH686_07495 are separated by 54 nucleotidesOH686_07495 and OH686_07500 are separated by 84 nucleotides OH686_07485: OH686_07485 - putative lipoprotein, at 1,522,531 to 1,523,091 _07485 OH686_07490: OH686_07490 - hypothetical protein, at 1,523,088 to 1,523,576 _07490 OH686_07495: OH686_07495 - hypothetical protein, at 1,523,631 to 1,524,074 _07495 OH686_07500: OH686_07500 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 1,524,159 to 1,525,286 _07500 Position (kb) 1523 1524 1525Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1522.669 kb on + strand, within OH686_07485at 1522.846 kb on + strand, within OH686_07485at 1522.846 kb on + strand, within OH686_07485at 1522.846 kb on + strand, within OH686_07485at 1522.846 kb on + strand, within OH686_07485at 1522.846 kb on + strand, within OH686_07485at 1522.846 kb on + strand, within OH686_07485at 1522.846 kb on + strand, within OH686_07485at 1522.846 kb on + strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.847 kb on - strand, within OH686_07485at 1522.855 kb on + strand, within OH686_07485at 1522.856 kb on - strand, within OH686_07485at 1522.897 kb on + strand, within OH686_07485at 1522.897 kb on + strand, within OH686_07485at 1522.897 kb on + strand, within OH686_07485at 1522.897 kb on + strand, within OH686_07485at 1522.898 kb on - strand, within OH686_07485at 1522.898 kb on - strand, within OH686_07485at 1522.898 kb on - strand, within OH686_07485at 1522.898 kb on - strand, within OH686_07485at 1522.898 kb on - strand, within OH686_07485at 1522.898 kb on - strand, within OH686_07485at 1522.922 kb on - strand, within OH686_07485at 1522.922 kb on - strand, within OH686_07485at 1522.922 kb on - strand, within OH686_07485at 1522.922 kb on - strand, within OH686_07485at 1523.066 kb on + strandat 1523.067 kb on - strandat 1523.077 kb on + strandat 1523.077 kb on + strandat 1523.185 kb on - strand, within OH686_07490at 1523.298 kb on + strand, within OH686_07490at 1523.298 kb on + strand, within OH686_07490at 1523.299 kb on - strand, within OH686_07490at 1523.299 kb on - strand, within OH686_07490at 1523.319 kb on + strand, within OH686_07490at 1523.319 kb on + strand, within OH686_07490at 1523.320 kb on - strand, within OH686_07490at 1523.320 kb on - strand, within OH686_07490at 1523.320 kb on - strand, within OH686_07490at 1523.379 kb on + strand, within OH686_07490at 1523.379 kb on + strand, within OH686_07490at 1523.379 kb on + strand, within OH686_07490at 1523.379 kb on + strand, within OH686_07490at 1523.379 kb on + strand, within OH686_07490at 1523.380 kb on - strand, within OH686_07490at 1523.380 kb on - strand, within OH686_07490at 1523.380 kb on - strand, within OH686_07490at 1523.478 kb on + strand, within OH686_07490at 1523.478 kb on + strand, within OH686_07490at 1523.478 kb on + strand, within OH686_07490at 1523.478 kb on + strand, within OH686_07490at 1523.478 kb on + strand, within OH686_07490at 1523.478 kb on + strand, within OH686_07490at 1523.479 kb on - strand, within OH686_07490at 1523.479 kb on - strand, within OH686_07490at 1523.479 kb on - strand, within OH686_07490at 1523.479 kb on - strand, within OH686_07490at 1523.479 kb on - strand, within OH686_07490at 1523.479 kb on - strand, within OH686_07490at 1523.479 kb on - strand, within OH686_07490at 1523.598 kb on + strandat 1523.599 kb on - strandat 1523.599 kb on - strandat 1523.599 kb on - strandat 1523.599 kb on - strandat 1523.601 kb on + strandat 1523.601 kb on + strandat 1523.647 kb on + strandat 1523.648 kb on - strandat 1523.662 kb on + strandat 1523.662 kb on + strandat 1523.938 kb on + strand, within OH686_07495at 1523.986 kb on + strand, within OH686_07495at 1524.120 kb on + strandat 1524.120 kb on + strandat 1524.120 kb on + strandat 1524.120 kb on + strandat 1524.120 kb on + strandat 1524.120 kb on + strandat 1524.120 kb on + strandat 1524.120 kb on + strandat 1524.121 kb on - strandat 1524.121 kb on - strandat 1524.121 kb on - strandat 1524.121 kb on - strandat 1524.121 kb on - strandat 1524.121 kb on - strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.252 kb on + strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.253 kb on - strandat 1524.255 kb on + strandat 1524.255 kb on + strandat 1524.255 kb on + strandat 1524.255 kb on + strandat 1524.256 kb on - strandat 1524.256 kb on - strandat 1524.606 kb on + strand, within OH686_07500at 1524.606 kb on + strand, within OH686_07500at 1524.606 kb on + strand, within OH686_07500at 1524.606 kb on + strand, within OH686_07500at 1524.607 kb on - strand, within OH686_07500at 1524.607 kb on - strand, within OH686_07500at 1524.607 kb on - strand, within OH686_07500at 1524.607 kb on - strand, within OH686_07500at 1524.678 kb on + strand, within OH686_07500at 1524.679 kb on - strand, within OH686_07500at 1524.687 kb on + strand, within OH686_07500at 1524.687 kb on + strand, within OH686_07500at 1524.687 kb on + strand, within OH686_07500at 1524.687 kb on + strand, within OH686_07500at 1524.687 kb on + strand, within OH686_07500at 1524.687 kb on + strand, within OH686_07500at 1524.687 kb on + strand, within OH686_07500at 1524.687 kb on + strand, within OH686_07500at 1524.687 kb on + strand, within OH686_07500at 1524.687 kb on + strand, within OH686_07500at 1524.723 kb on + strand, within OH686_07500at 1524.723 kb on + strand, within OH686_07500at 1524.723 kb on + strand, within OH686_07500at 1524.724 kb on - strand, within OH686_07500at 1524.724 kb on - strand, within OH686_07500at 1524.774 kb on + strand, within OH686_07500at 1524.775 kb on - strand, within OH686_07500at 1524.775 kb on - strand, within OH686_07500at 1524.775 kb on - strand, within OH686_07500at 1524.934 kb on - strand, within OH686_07500

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,522,669 + OH686_07485 0.25 -0.0
1,522,846 + OH686_07485 0.56 -0.3
1,522,846 + OH686_07485 0.56 -0.4
1,522,846 + OH686_07485 0.56 -0.4
1,522,846 + OH686_07485 0.56 +0.2
1,522,846 + OH686_07485 0.56 -0.1
1,522,846 + OH686_07485 0.56 -0.2
1,522,846 + OH686_07485 0.56 -0.9
1,522,846 + OH686_07485 0.56 +1.4
1,522,847 - OH686_07485 0.56 -0.4
1,522,847 - OH686_07485 0.56 +0.6
1,522,847 - OH686_07485 0.56 -0.5
1,522,847 - OH686_07485 0.56 +0.5
1,522,847 - OH686_07485 0.56 -0.5
1,522,847 - OH686_07485 0.56 +0.1
1,522,847 - OH686_07485 0.56 -1.7
1,522,847 - OH686_07485 0.56 -0.1
1,522,847 - OH686_07485 0.56 -0.2
1,522,847 - OH686_07485 0.56 -1.6
1,522,847 - OH686_07485 0.56 +1.0
1,522,847 - OH686_07485 0.56 +0.4
1,522,847 - OH686_07485 0.56 -0.4
1,522,855 + OH686_07485 0.58 +0.8
1,522,856 - OH686_07485 0.58 -1.3
1,522,897 + OH686_07485 0.65 -0.2
1,522,897 + OH686_07485 0.65 +0.8
1,522,897 + OH686_07485 0.65 -0.2
1,522,897 + OH686_07485 0.65 +0.4
1,522,898 - OH686_07485 0.65 -0.8
1,522,898 - OH686_07485 0.65 -1.6
1,522,898 - OH686_07485 0.65 +0.3
1,522,898 - OH686_07485 0.65 +0.4
1,522,898 - OH686_07485 0.65 -0.9
1,522,898 - OH686_07485 0.65 +0.1
1,522,922 - OH686_07485 0.70 -0.3
1,522,922 - OH686_07485 0.70 +0.1
1,522,922 - OH686_07485 0.70 -0.5
1,522,922 - OH686_07485 0.70 -1.2
1,523,066 + +0.0
1,523,067 - -0.0
1,523,077 + +0.7
1,523,077 + -0.3
1,523,185 - OH686_07490 0.20 -0.3
1,523,298 + OH686_07490 0.43 +0.3
1,523,298 + OH686_07490 0.43 -0.0
1,523,299 - OH686_07490 0.43 -0.5
1,523,299 - OH686_07490 0.43 -0.9
1,523,319 + OH686_07490 0.47 -0.1
1,523,319 + OH686_07490 0.47 -0.8
1,523,320 - OH686_07490 0.47 +0.8
1,523,320 - OH686_07490 0.47 +0.4
1,523,320 - OH686_07490 0.47 -0.3
1,523,379 + OH686_07490 0.60 -0.2
1,523,379 + OH686_07490 0.60 +0.6
1,523,379 + OH686_07490 0.60 +0.4
1,523,379 + OH686_07490 0.60 -1.1
1,523,379 + OH686_07490 0.60 -0.3
1,523,380 - OH686_07490 0.60 -0.0
1,523,380 - OH686_07490 0.60 -0.6
1,523,380 - OH686_07490 0.60 -0.3
1,523,478 + OH686_07490 0.80 -0.6
1,523,478 + OH686_07490 0.80 +0.4
1,523,478 + OH686_07490 0.80 -0.3
1,523,478 + OH686_07490 0.80 -1.4
1,523,478 + OH686_07490 0.80 +0.1
1,523,478 + OH686_07490 0.80 -0.2
1,523,479 - OH686_07490 0.80 -1.5
1,523,479 - OH686_07490 0.80 +0.3
1,523,479 - OH686_07490 0.80 +0.2
1,523,479 - OH686_07490 0.80 -0.9
1,523,479 - OH686_07490 0.80 -0.2
1,523,479 - OH686_07490 0.80 +0.4
1,523,479 - OH686_07490 0.80 -0.6
1,523,598 + -1.3
1,523,599 - -0.9
1,523,599 - +0.4
1,523,599 - +0.1
1,523,599 - -0.0
1,523,601 + -0.6
1,523,601 + +0.9
1,523,647 + +0.4
1,523,648 - +0.0
1,523,662 + -0.0
1,523,662 + -1.1
1,523,938 + OH686_07495 0.69 +0.2
1,523,986 + OH686_07495 0.80 +1.1
1,524,120 + -1.7
1,524,120 + +0.1
1,524,120 + -0.7
1,524,120 + -0.4
1,524,120 + -0.5
1,524,120 + -0.0
1,524,120 + -0.5
1,524,120 + -0.4
1,524,121 - -0.6
1,524,121 - +0.1
1,524,121 - -0.8
1,524,121 - -0.1
1,524,121 - -0.3
1,524,121 - +0.4
1,524,252 + +0.7
1,524,252 + -0.2
1,524,252 + -0.1
1,524,252 + +0.4
1,524,252 + -0.3
1,524,252 + +0.3
1,524,252 + -0.1
1,524,252 + +0.1
1,524,252 + -0.5
1,524,252 + +0.4
1,524,252 + -0.1
1,524,252 + +0.0
1,524,252 + +0.7
1,524,252 + +0.4
1,524,252 + +0.3
1,524,252 + -0.8
1,524,252 + -0.1
1,524,252 + -1.0
1,524,252 + -0.3
1,524,253 - -1.6
1,524,253 - -0.4
1,524,253 - +0.4
1,524,253 - +1.0
1,524,253 - -0.1
1,524,253 - -0.0
1,524,253 - -0.6
1,524,253 - +0.0
1,524,253 - -0.5
1,524,253 - +0.1
1,524,253 - +0.4
1,524,253 - -0.9
1,524,253 - +0.7
1,524,253 - +0.1
1,524,253 - +0.2
1,524,253 - -0.6
1,524,253 - +0.2
1,524,253 - +1.1
1,524,253 - +0.8
1,524,253 - +0.2
1,524,253 - -0.8
1,524,253 - +0.4
1,524,253 - -0.3
1,524,253 - +1.3
1,524,255 + -0.3
1,524,255 + +0.5
1,524,255 + +0.3
1,524,255 + -0.3
1,524,256 - +0.0
1,524,256 - -0.1
1,524,606 + OH686_07500 0.40 +1.1
1,524,606 + OH686_07500 0.40 +0.6
1,524,606 + OH686_07500 0.40 -0.2
1,524,606 + OH686_07500 0.40 -0.6
1,524,607 - OH686_07500 0.40 -0.1
1,524,607 - OH686_07500 0.40 +1.6
1,524,607 - OH686_07500 0.40 -1.2
1,524,607 - OH686_07500 0.40 -2.7
1,524,678 + OH686_07500 0.46 -1.8
1,524,679 - OH686_07500 0.46 +1.5
1,524,687 + OH686_07500 0.47 -0.2
1,524,687 + OH686_07500 0.47 -2.8
1,524,687 + OH686_07500 0.47 +1.8
1,524,687 + OH686_07500 0.47 +0.1
1,524,687 + OH686_07500 0.47 +1.2
1,524,687 + OH686_07500 0.47 -1.0
1,524,687 + OH686_07500 0.47 +0.7
1,524,687 + OH686_07500 0.47 -0.3
1,524,687 + OH686_07500 0.47 +0.1
1,524,687 + OH686_07500 0.47 +1.2
1,524,723 + OH686_07500 0.50 +0.7
1,524,723 + OH686_07500 0.50 +0.3
1,524,723 + OH686_07500 0.50 +1.6
1,524,724 - OH686_07500 0.50 -0.9
1,524,724 - OH686_07500 0.50 -0.8
1,524,774 + OH686_07500 0.55 -0.0
1,524,775 - OH686_07500 0.55 -1.1
1,524,775 - OH686_07500 0.55 -0.1
1,524,775 - OH686_07500 0.55 +0.4
1,524,934 - OH686_07500 0.69 -0.4

Or see this region's nucleotide sequence