Strain Fitness in Pseudomonas sp. S08-1 around OH686_06680

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_06670 and OH686_06675 are separated by 76 nucleotidesOH686_06675 and OH686_06680 are separated by 62 nucleotidesOH686_06680 and OH686_06685 are separated by 63 nucleotides OH686_06670: OH686_06670 - Nitroreductase family protein, at 1,355,779 to 1,356,378 _06670 OH686_06675: OH686_06675 - ase-related protein, at 1,356,455 to 1,357,189 _06675 OH686_06680: OH686_06680 - CDS, at 1,357,252 to 1,357,473 _06680 OH686_06685: OH686_06685 - FMNH2-dependent alkanesulfonate monooxygenase , at 1,357,537 to 1,358,703 _06685 Position (kb) 1357 1358Strain fitness (log2 ratio) -2 -1 0 1 2at 1356.579 kb on + strand, within OH686_06675at 1356.579 kb on + strand, within OH686_06675at 1356.580 kb on - strand, within OH686_06675at 1356.580 kb on - strand, within OH686_06675at 1356.580 kb on - strand, within OH686_06675at 1356.580 kb on - strand, within OH686_06675at 1356.580 kb on - strand, within OH686_06675at 1356.738 kb on + strand, within OH686_06675at 1356.738 kb on + strand, within OH686_06675at 1356.738 kb on + strand, within OH686_06675at 1356.739 kb on - strand, within OH686_06675at 1356.739 kb on - strand, within OH686_06675at 1356.739 kb on - strand, within OH686_06675at 1356.739 kb on - strand, within OH686_06675at 1356.739 kb on - strand, within OH686_06675at 1356.739 kb on - strand, within OH686_06675at 1356.828 kb on + strand, within OH686_06675at 1356.828 kb on + strand, within OH686_06675at 1356.829 kb on - strand, within OH686_06675at 1356.829 kb on - strand, within OH686_06675at 1356.829 kb on - strand, within OH686_06675at 1356.829 kb on - strand, within OH686_06675at 1356.888 kb on + strand, within OH686_06675at 1356.972 kb on + strand, within OH686_06675at 1356.972 kb on + strand, within OH686_06675at 1356.972 kb on + strand, within OH686_06675at 1356.972 kb on + strand, within OH686_06675at 1356.972 kb on + strand, within OH686_06675at 1356.972 kb on + strand, within OH686_06675at 1356.973 kb on - strand, within OH686_06675at 1356.973 kb on - strand, within OH686_06675at 1356.973 kb on - strand, within OH686_06675at 1356.973 kb on - strand, within OH686_06675at 1356.973 kb on - strand, within OH686_06675at 1357.065 kb on + strand, within OH686_06675at 1357.065 kb on + strand, within OH686_06675at 1357.065 kb on + strand, within OH686_06675at 1357.066 kb on - strand, within OH686_06675at 1357.074 kb on + strand, within OH686_06675at 1357.074 kb on + strand, within OH686_06675at 1357.074 kb on + strand, within OH686_06675at 1357.074 kb on + strand, within OH686_06675at 1357.074 kb on + strand, within OH686_06675at 1357.074 kb on + strand, within OH686_06675at 1357.075 kb on - strand, within OH686_06675at 1357.075 kb on - strand, within OH686_06675at 1357.075 kb on - strand, within OH686_06675at 1357.075 kb on - strand, within OH686_06675at 1357.075 kb on - strand, within OH686_06675at 1357.075 kb on - strand, within OH686_06675at 1357.414 kb on + strand, within OH686_06680at 1357.414 kb on + strand, within OH686_06680at 1357.414 kb on + strand, within OH686_06680at 1357.414 kb on + strand, within OH686_06680at 1357.586 kb on - strandat 1357.586 kb on - strandat 1357.684 kb on + strand, within OH686_06685at 1357.684 kb on + strand, within OH686_06685at 1357.684 kb on + strand, within OH686_06685at 1357.684 kb on + strand, within OH686_06685at 1357.684 kb on + strand, within OH686_06685at 1357.684 kb on + strand, within OH686_06685at 1357.684 kb on + strand, within OH686_06685at 1357.684 kb on + strand, within OH686_06685at 1357.684 kb on + strand, within OH686_06685at 1357.685 kb on - strand, within OH686_06685at 1357.685 kb on - strand, within OH686_06685at 1357.685 kb on - strand, within OH686_06685at 1357.685 kb on - strand, within OH686_06685at 1357.685 kb on - strand, within OH686_06685at 1357.685 kb on - strand, within OH686_06685at 1357.685 kb on - strand, within OH686_06685at 1357.685 kb on - strand, within OH686_06685at 1357.685 kb on - strand, within OH686_06685at 1357.693 kb on + strand, within OH686_06685at 1357.852 kb on + strand, within OH686_06685at 1357.853 kb on - strand, within OH686_06685at 1357.978 kb on + strand, within OH686_06685at 1358.041 kb on + strand, within OH686_06685at 1358.041 kb on + strand, within OH686_06685at 1358.042 kb on - strand, within OH686_06685at 1358.042 kb on - strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.056 kb on + strand, within OH686_06685at 1358.057 kb on - strand, within OH686_06685at 1358.057 kb on - strand, within OH686_06685at 1358.057 kb on - strand, within OH686_06685at 1358.057 kb on - strand, within OH686_06685at 1358.057 kb on - strand, within OH686_06685at 1358.116 kb on + strand, within OH686_06685at 1358.117 kb on - strand, within OH686_06685at 1358.117 kb on - strand, within OH686_06685at 1358.117 kb on - strand, within OH686_06685at 1358.117 kb on - strand, within OH686_06685at 1358.173 kb on + strand, within OH686_06685at 1358.173 kb on + strand, within OH686_06685at 1358.174 kb on - strand, within OH686_06685at 1358.174 kb on - strand, within OH686_06685at 1358.174 kb on - strand, within OH686_06685at 1358.332 kb on + strand, within OH686_06685at 1358.333 kb on - strand, within OH686_06685at 1358.419 kb on + strand, within OH686_06685at 1358.419 kb on + strand, within OH686_06685at 1358.420 kb on - strand, within OH686_06685at 1358.420 kb on - strand, within OH686_06685

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,356,579 + OH686_06675 0.17 +0.5
1,356,579 + OH686_06675 0.17 +0.2
1,356,580 - OH686_06675 0.17 +1.7
1,356,580 - OH686_06675 0.17 -2.1
1,356,580 - OH686_06675 0.17 -0.1
1,356,580 - OH686_06675 0.17 -0.4
1,356,580 - OH686_06675 0.17 -1.0
1,356,738 + OH686_06675 0.39 +0.7
1,356,738 + OH686_06675 0.39 -0.7
1,356,738 + OH686_06675 0.39 +0.1
1,356,739 - OH686_06675 0.39 -0.4
1,356,739 - OH686_06675 0.39 -0.3
1,356,739 - OH686_06675 0.39 +0.3
1,356,739 - OH686_06675 0.39 -0.1
1,356,739 - OH686_06675 0.39 -0.6
1,356,739 - OH686_06675 0.39 -0.4
1,356,828 + OH686_06675 0.51 -0.2
1,356,828 + OH686_06675 0.51 -0.2
1,356,829 - OH686_06675 0.51 -0.3
1,356,829 - OH686_06675 0.51 +0.1
1,356,829 - OH686_06675 0.51 +0.5
1,356,829 - OH686_06675 0.51 -0.1
1,356,888 + OH686_06675 0.59 -0.8
1,356,972 + OH686_06675 0.70 +0.5
1,356,972 + OH686_06675 0.70 +0.8
1,356,972 + OH686_06675 0.70 -0.3
1,356,972 + OH686_06675 0.70 -0.6
1,356,972 + OH686_06675 0.70 +0.8
1,356,972 + OH686_06675 0.70 -0.1
1,356,973 - OH686_06675 0.70 +0.5
1,356,973 - OH686_06675 0.70 -0.5
1,356,973 - OH686_06675 0.70 -0.0
1,356,973 - OH686_06675 0.70 -0.1
1,356,973 - OH686_06675 0.70 -0.9
1,357,065 + OH686_06675 0.83 +0.1
1,357,065 + OH686_06675 0.83 -0.1
1,357,065 + OH686_06675 0.83 -0.0
1,357,066 - OH686_06675 0.83 -0.2
1,357,074 + OH686_06675 0.84 -1.8
1,357,074 + OH686_06675 0.84 -0.0
1,357,074 + OH686_06675 0.84 +0.1
1,357,074 + OH686_06675 0.84 -0.0
1,357,074 + OH686_06675 0.84 -1.0
1,357,074 + OH686_06675 0.84 +0.3
1,357,075 - OH686_06675 0.84 -0.8
1,357,075 - OH686_06675 0.84 -0.6
1,357,075 - OH686_06675 0.84 +0.7
1,357,075 - OH686_06675 0.84 +0.1
1,357,075 - OH686_06675 0.84 +2.1
1,357,075 - OH686_06675 0.84 -0.8
1,357,414 + OH686_06680 0.73 -0.3
1,357,414 + OH686_06680 0.73 +1.0
1,357,414 + OH686_06680 0.73 -0.1
1,357,414 + OH686_06680 0.73 +0.5
1,357,586 - +0.9
1,357,586 - +0.1
1,357,684 + OH686_06685 0.13 -0.7
1,357,684 + OH686_06685 0.13 -2.3
1,357,684 + OH686_06685 0.13 -0.5
1,357,684 + OH686_06685 0.13 +1.5
1,357,684 + OH686_06685 0.13 +0.4
1,357,684 + OH686_06685 0.13 +0.7
1,357,684 + OH686_06685 0.13 +0.2
1,357,684 + OH686_06685 0.13 -0.1
1,357,684 + OH686_06685 0.13 +0.0
1,357,685 - OH686_06685 0.13 -0.9
1,357,685 - OH686_06685 0.13 -0.0
1,357,685 - OH686_06685 0.13 -0.3
1,357,685 - OH686_06685 0.13 +0.3
1,357,685 - OH686_06685 0.13 -0.4
1,357,685 - OH686_06685 0.13 -0.4
1,357,685 - OH686_06685 0.13 +0.1
1,357,685 - OH686_06685 0.13 +0.3
1,357,685 - OH686_06685 0.13 +0.9
1,357,693 + OH686_06685 0.13 +1.6
1,357,852 + OH686_06685 0.27 -0.2
1,357,853 - OH686_06685 0.27 -0.5
1,357,978 + OH686_06685 0.38 +0.8
1,358,041 + OH686_06685 0.43 -0.9
1,358,041 + OH686_06685 0.43 +0.5
1,358,042 - OH686_06685 0.43 +0.4
1,358,042 - OH686_06685 0.43 -0.7
1,358,056 + OH686_06685 0.44 +0.2
1,358,056 + OH686_06685 0.44 +0.2
1,358,056 + OH686_06685 0.44 +1.2
1,358,056 + OH686_06685 0.44 +0.3
1,358,056 + OH686_06685 0.44 -1.7
1,358,056 + OH686_06685 0.44 -1.2
1,358,056 + OH686_06685 0.44 -0.1
1,358,056 + OH686_06685 0.44 -0.8
1,358,056 + OH686_06685 0.44 -0.1
1,358,056 + OH686_06685 0.44 -0.9
1,358,056 + OH686_06685 0.44 +0.2
1,358,056 + OH686_06685 0.44 +0.4
1,358,057 - OH686_06685 0.45 +0.7
1,358,057 - OH686_06685 0.45 +0.6
1,358,057 - OH686_06685 0.45 -0.4
1,358,057 - OH686_06685 0.45 -0.3
1,358,057 - OH686_06685 0.45 +1.3
1,358,116 + OH686_06685 0.50 +0.7
1,358,117 - OH686_06685 0.50 -0.3
1,358,117 - OH686_06685 0.50 -0.7
1,358,117 - OH686_06685 0.50 -0.1
1,358,117 - OH686_06685 0.50 -1.7
1,358,173 + OH686_06685 0.54 -0.3
1,358,173 + OH686_06685 0.54 -0.7
1,358,174 - OH686_06685 0.55 +1.4
1,358,174 - OH686_06685 0.55 -0.6
1,358,174 - OH686_06685 0.55 +0.1
1,358,332 + OH686_06685 0.68 +0.3
1,358,333 - OH686_06685 0.68 -0.3
1,358,419 + OH686_06685 0.76 -0.5
1,358,419 + OH686_06685 0.76 +1.4
1,358,420 - OH686_06685 0.76 -0.3
1,358,420 - OH686_06685 0.76 -0.1

Or see this region's nucleotide sequence