Strain Fitness in Pseudomonas sp. S08-1 around OH686_06590

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_06585 and OH686_06590 are separated by 90 nucleotidesOH686_06590 and OH686_06595 are separated by 2 nucleotidesOH686_06595 and OH686_06600 overlap by 4 nucleotides OH686_06585: OH686_06585 - hypothetical protein, at 1,337,033 to 1,338,010 _06585 OH686_06590: OH686_06590 - Gliding motility-associated ABC transporter substrate-binding protein GldG, at 1,338,101 to 1,339,933 _06590 OH686_06595: OH686_06595 - Gliding motility-associated ABC transporter permease protein GldF, at 1,339,936 to 1,340,667 _06595 OH686_06600: OH686_06600 - Gliding motility-associated ABC transporter ATP-binding protein GldA, at 1,340,664 to 1,341,584 _06600 Position (kb) 1338 1339 1340Strain fitness (log2 ratio) -2 -1 0 1 2at 1337.187 kb on + strand, within OH686_06585at 1337.681 kb on + strand, within OH686_06585at 1337.691 kb on + strand, within OH686_06585at 1337.691 kb on + strand, within OH686_06585at 1337.691 kb on + strand, within OH686_06585at 1337.691 kb on + strand, within OH686_06585at 1337.692 kb on - strand, within OH686_06585at 1337.692 kb on - strand, within OH686_06585at 1337.692 kb on - strand, within OH686_06585at 1337.692 kb on - strand, within OH686_06585at 1337.692 kb on - strand, within OH686_06585at 1337.934 kb on - strandat 1337.934 kb on - strandat 1337.949 kb on + strandat 1337.949 kb on + strandat 1337.949 kb on + strandat 1337.949 kb on + strandat 1337.950 kb on - strandat 1337.950 kb on - strandat 1338.010 kb on + strandat 1338.010 kb on + strandat 1338.010 kb on + strandat 1338.010 kb on + strandat 1338.011 kb on - strandat 1338.011 kb on - strandat 1338.011 kb on - strandat 1338.011 kb on - strandat 1338.011 kb on - strandat 1338.011 kb on - strandat 1338.691 kb on - strand, within OH686_06590at 1338.732 kb on + strand, within OH686_06590at 1338.819 kb on + strand, within OH686_06590at 1339.035 kb on - strand, within OH686_06590at 1339.035 kb on - strand, within OH686_06590at 1339.203 kb on + strand, within OH686_06590at 1339.452 kb on + strand, within OH686_06590at 1339.453 kb on - strand, within OH686_06590at 1339.453 kb on - strand, within OH686_06590at 1339.536 kb on + strand, within OH686_06590at 1339.536 kb on + strand, within OH686_06590at 1339.536 kb on + strand, within OH686_06590at 1339.536 kb on + strand, within OH686_06590at 1339.537 kb on - strand, within OH686_06590at 1339.537 kb on - strand, within OH686_06590at 1339.537 kb on - strand, within OH686_06590at 1339.537 kb on - strand, within OH686_06590at 1339.665 kb on + strand, within OH686_06590at 1339.666 kb on - strand, within OH686_06590at 1339.698 kb on + strand, within OH686_06590at 1339.698 kb on + strand, within OH686_06590at 1339.698 kb on + strand, within OH686_06590at 1339.699 kb on - strand, within OH686_06590at 1339.749 kb on + strand, within OH686_06590at 1339.749 kb on + strand, within OH686_06590at 1339.749 kb on + strand, within OH686_06590at 1339.750 kb on - strandat 1339.750 kb on - strandat 1339.750 kb on - strandat 1339.809 kb on + strandat 1339.809 kb on + strandat 1339.809 kb on + strandat 1339.809 kb on + strandat 1339.809 kb on + strandat 1339.810 kb on - strandat 1339.810 kb on - strandat 1339.810 kb on - strandat 1339.810 kb on - strandat 1339.810 kb on - strandat 1339.917 kb on + strandat 1339.917 kb on + strandat 1339.917 kb on + strandat 1339.917 kb on + strandat 1339.917 kb on + strandat 1339.917 kb on + strandat 1339.917 kb on + strandat 1339.918 kb on - strandat 1339.918 kb on - strandat 1339.918 kb on - strandat 1339.918 kb on - strandat 1339.918 kb on - strandat 1339.918 kb on - strandat 1340.006 kb on + strandat 1340.006 kb on + strandat 1340.006 kb on + strandat 1340.006 kb on + strandat 1340.006 kb on + strandat 1340.007 kb on - strandat 1340.007 kb on - strandat 1340.231 kb on + strand, within OH686_06595at 1340.231 kb on + strand, within OH686_06595at 1340.231 kb on + strand, within OH686_06595at 1340.231 kb on + strand, within OH686_06595at 1340.231 kb on + strand, within OH686_06595at 1340.232 kb on - strand, within OH686_06595at 1340.261 kb on + strand, within OH686_06595at 1340.261 kb on + strand, within OH686_06595at 1340.300 kb on + strand, within OH686_06595at 1340.300 kb on + strand, within OH686_06595at 1340.300 kb on + strand, within OH686_06595at 1340.300 kb on + strand, within OH686_06595at 1340.300 kb on + strand, within OH686_06595at 1340.300 kb on + strand, within OH686_06595at 1340.301 kb on - strand, within OH686_06595at 1340.301 kb on - strand, within OH686_06595at 1340.301 kb on - strand, within OH686_06595at 1340.301 kb on - strand, within OH686_06595at 1340.301 kb on - strand, within OH686_06595at 1340.301 kb on - strand, within OH686_06595at 1340.301 kb on - strand, within OH686_06595at 1340.486 kb on + strand, within OH686_06595at 1340.486 kb on + strand, within OH686_06595at 1340.486 kb on + strand, within OH686_06595at 1340.486 kb on + strand, within OH686_06595at 1340.487 kb on - strand, within OH686_06595at 1340.487 kb on - strand, within OH686_06595at 1340.487 kb on - strand, within OH686_06595at 1340.540 kb on + strand, within OH686_06595at 1340.540 kb on + strand, within OH686_06595at 1340.541 kb on - strand, within OH686_06595at 1340.541 kb on - strand, within OH686_06595at 1340.541 kb on - strand, within OH686_06595at 1340.555 kb on + strand, within OH686_06595at 1340.555 kb on + strand, within OH686_06595at 1340.556 kb on - strand, within OH686_06595at 1340.556 kb on - strand, within OH686_06595at 1340.603 kb on + strandat 1340.603 kb on + strandat 1340.603 kb on + strandat 1340.603 kb on + strandat 1340.604 kb on - strandat 1340.604 kb on - strandat 1340.604 kb on - strandat 1340.604 kb on - strandat 1340.604 kb on - strandat 1340.624 kb on + strandat 1340.624 kb on + strandat 1340.624 kb on + strandat 1340.624 kb on + strandat 1340.625 kb on - strandat 1340.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,337,187 + OH686_06585 0.16 -0.8
1,337,681 + OH686_06585 0.66 -0.8
1,337,691 + OH686_06585 0.67 -0.0
1,337,691 + OH686_06585 0.67 -0.1
1,337,691 + OH686_06585 0.67 +0.5
1,337,691 + OH686_06585 0.67 +1.0
1,337,692 - OH686_06585 0.67 -0.6
1,337,692 - OH686_06585 0.67 +0.2
1,337,692 - OH686_06585 0.67 -1.3
1,337,692 - OH686_06585 0.67 +0.3
1,337,692 - OH686_06585 0.67 +0.9
1,337,934 - +0.3
1,337,934 - -0.8
1,337,949 + +1.7
1,337,949 + -0.0
1,337,949 + +1.3
1,337,949 + -0.5
1,337,950 - +0.3
1,337,950 - -2.2
1,338,010 + +0.5
1,338,010 + +1.0
1,338,010 + +0.4
1,338,010 + +0.2
1,338,011 - +0.3
1,338,011 - -0.5
1,338,011 - +0.5
1,338,011 - -0.7
1,338,011 - +0.2
1,338,011 - -0.3
1,338,691 - OH686_06590 0.32 +0.7
1,338,732 + OH686_06590 0.34 -0.9
1,338,819 + OH686_06590 0.39 +0.1
1,339,035 - OH686_06590 0.51 +1.3
1,339,035 - OH686_06590 0.51 +0.3
1,339,203 + OH686_06590 0.60 +0.6
1,339,452 + OH686_06590 0.74 +0.4
1,339,453 - OH686_06590 0.74 +0.5
1,339,453 - OH686_06590 0.74 +0.4
1,339,536 + OH686_06590 0.78 +0.8
1,339,536 + OH686_06590 0.78 +0.6
1,339,536 + OH686_06590 0.78 -2.0
1,339,536 + OH686_06590 0.78 +1.1
1,339,537 - OH686_06590 0.78 +0.1
1,339,537 - OH686_06590 0.78 -0.2
1,339,537 - OH686_06590 0.78 +0.0
1,339,537 - OH686_06590 0.78 +0.4
1,339,665 + OH686_06590 0.85 +1.1
1,339,666 - OH686_06590 0.85 +0.2
1,339,698 + OH686_06590 0.87 +0.5
1,339,698 + OH686_06590 0.87 +0.2
1,339,698 + OH686_06590 0.87 -1.0
1,339,699 - OH686_06590 0.87 +0.0
1,339,749 + OH686_06590 0.90 +0.4
1,339,749 + OH686_06590 0.90 +0.1
1,339,749 + OH686_06590 0.90 +1.2
1,339,750 - -0.2
1,339,750 - -0.3
1,339,750 - +0.9
1,339,809 + -0.1
1,339,809 + -0.4
1,339,809 + +1.5
1,339,809 + +2.0
1,339,809 + +0.7
1,339,810 - -0.7
1,339,810 - +0.9
1,339,810 - +0.5
1,339,810 - +0.6
1,339,810 - -1.1
1,339,917 + +2.1
1,339,917 + +0.2
1,339,917 + +0.1
1,339,917 + +1.0
1,339,917 + +1.2
1,339,917 + +1.0
1,339,917 + +1.7
1,339,918 - +0.7
1,339,918 - +0.4
1,339,918 - +0.9
1,339,918 - +0.5
1,339,918 - -0.2
1,339,918 - +2.3
1,340,006 + +0.4
1,340,006 + -0.1
1,340,006 + +0.3
1,340,006 + +0.0
1,340,006 + +0.8
1,340,007 - +0.3
1,340,007 - -0.6
1,340,231 + OH686_06595 0.40 -0.5
1,340,231 + OH686_06595 0.40 +0.6
1,340,231 + OH686_06595 0.40 +1.0
1,340,231 + OH686_06595 0.40 +0.4
1,340,231 + OH686_06595 0.40 -0.1
1,340,232 - OH686_06595 0.40 +1.0
1,340,261 + OH686_06595 0.44 -0.0
1,340,261 + OH686_06595 0.44 +0.6
1,340,300 + OH686_06595 0.50 +0.3
1,340,300 + OH686_06595 0.50 -0.2
1,340,300 + OH686_06595 0.50 -0.1
1,340,300 + OH686_06595 0.50 -0.2
1,340,300 + OH686_06595 0.50 -0.2
1,340,300 + OH686_06595 0.50 +0.4
1,340,301 - OH686_06595 0.50 +0.0
1,340,301 - OH686_06595 0.50 -0.5
1,340,301 - OH686_06595 0.50 +0.4
1,340,301 - OH686_06595 0.50 +0.8
1,340,301 - OH686_06595 0.50 +0.3
1,340,301 - OH686_06595 0.50 +0.2
1,340,301 - OH686_06595 0.50 -0.3
1,340,486 + OH686_06595 0.75 -0.8
1,340,486 + OH686_06595 0.75 +0.1
1,340,486 + OH686_06595 0.75 -0.0
1,340,486 + OH686_06595 0.75 -0.8
1,340,487 - OH686_06595 0.75 +1.0
1,340,487 - OH686_06595 0.75 +0.5
1,340,487 - OH686_06595 0.75 +0.7
1,340,540 + OH686_06595 0.83 +0.7
1,340,540 + OH686_06595 0.83 +1.0
1,340,541 - OH686_06595 0.83 +0.1
1,340,541 - OH686_06595 0.83 +1.2
1,340,541 - OH686_06595 0.83 -0.2
1,340,555 + OH686_06595 0.85 +1.3
1,340,555 + OH686_06595 0.85 +0.4
1,340,556 - OH686_06595 0.85 -0.8
1,340,556 - OH686_06595 0.85 -0.2
1,340,603 + -1.4
1,340,603 + +0.7
1,340,603 + -0.5
1,340,603 + +0.5
1,340,604 - +0.2
1,340,604 - +1.3
1,340,604 - +0.5
1,340,604 - -0.7
1,340,604 - -0.4
1,340,624 + +0.5
1,340,624 + +0.2
1,340,624 + +1.3
1,340,624 + -0.1
1,340,625 - +0.4
1,340,625 - +0.6

Or see this region's nucleotide sequence