Strain Fitness in Pseudomonas sp. S08-1 around OH686_04300

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04290 and OH686_04295 are separated by 1 nucleotidesOH686_04295 and OH686_04300 are separated by 83 nucleotidesOH686_04300 and OH686_04305 are separated by 3 nucleotides OH686_04290: OH686_04290 - ase-related protein, at 889,863 to 890,837 _04290 OH686_04295: OH686_04295 - NAD kinase , at 890,839 to 891,726 _04295 OH686_04300: OH686_04300 - hypothetical protein, at 891,810 to 892,739 _04300 OH686_04305: OH686_04305 - hypothetical protein, at 892,743 to 893,972 _04305 Position (kb) 891 892 893Strain fitness (log2 ratio) -2 -1 0 1at 891.760 kb on - strandat 891.760 kb on - strandat 891.798 kb on + strandat 892.050 kb on + strand, within OH686_04300at 892.050 kb on + strand, within OH686_04300at 892.051 kb on - strand, within OH686_04300at 892.053 kb on + strand, within OH686_04300at 892.053 kb on + strand, within OH686_04300at 892.054 kb on - strand, within OH686_04300at 892.054 kb on - strand, within OH686_04300at 892.054 kb on - strand, within OH686_04300at 892.139 kb on + strand, within OH686_04300at 892.139 kb on + strand, within OH686_04300at 892.139 kb on + strand, within OH686_04300at 892.140 kb on - strand, within OH686_04300at 892.140 kb on - strand, within OH686_04300at 892.140 kb on - strand, within OH686_04300at 892.212 kb on + strand, within OH686_04300at 892.404 kb on + strand, within OH686_04300at 892.404 kb on + strand, within OH686_04300at 892.404 kb on + strand, within OH686_04300at 892.405 kb on - strand, within OH686_04300at 892.405 kb on - strand, within OH686_04300at 892.405 kb on - strand, within OH686_04300at 892.413 kb on + strand, within OH686_04300at 892.413 kb on + strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.539 kb on - strand, within OH686_04300at 892.737 kb on + strandat 892.737 kb on + strandat 892.738 kb on - strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.741 kb on + strandat 892.742 kb on - strandat 892.742 kb on - strandat 892.761 kb on - strandat 892.783 kb on + strandat 892.783 kb on + strandat 892.784 kb on - strandat 892.821 kb on + strandat 892.859 kb on - strandat 892.925 kb on - strand, within OH686_04305at 892.933 kb on + strand, within OH686_04305at 892.933 kb on + strand, within OH686_04305at 892.933 kb on + strand, within OH686_04305at 892.933 kb on + strand, within OH686_04305at 892.933 kb on + strand, within OH686_04305at 892.934 kb on - strand, within OH686_04305at 892.934 kb on - strand, within OH686_04305at 892.934 kb on - strand, within OH686_04305at 892.934 kb on - strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.971 kb on + strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 892.972 kb on - strand, within OH686_04305at 893.020 kb on + strand, within OH686_04305at 893.021 kb on - strand, within OH686_04305at 893.021 kb on - strand, within OH686_04305at 893.021 kb on - strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.308 kb on + strand, within OH686_04305at 893.309 kb on - strand, within OH686_04305at 893.309 kb on - strand, within OH686_04305at 893.551 kb on - strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.692 kb on + strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.693 kb on - strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.695 kb on + strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305at 893.696 kb on - strand, within OH686_04305

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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891,760 - -0.3
891,760 - +0.6
891,798 + +0.0
892,050 + OH686_04300 0.26 -0.2
892,050 + OH686_04300 0.26 -0.8
892,051 - OH686_04300 0.26 +0.5
892,053 + OH686_04300 0.26 -0.8
892,053 + OH686_04300 0.26 +1.2
892,054 - OH686_04300 0.26 -0.2
892,054 - OH686_04300 0.26 +0.8
892,054 - OH686_04300 0.26 -1.9
892,139 + OH686_04300 0.35 +0.4
892,139 + OH686_04300 0.35 -0.6
892,139 + OH686_04300 0.35 +0.6
892,140 - OH686_04300 0.35 -0.2
892,140 - OH686_04300 0.35 -1.7
892,140 - OH686_04300 0.35 -0.1
892,212 + OH686_04300 0.43 -0.4
892,404 + OH686_04300 0.64 +0.3
892,404 + OH686_04300 0.64 -1.0
892,404 + OH686_04300 0.64 -0.7
892,405 - OH686_04300 0.64 -0.9
892,405 - OH686_04300 0.64 -0.1
892,405 - OH686_04300 0.64 +0.2
892,413 + OH686_04300 0.65 -0.0
892,413 + OH686_04300 0.65 -0.6
892,414 - OH686_04300 0.65 -0.5
892,414 - OH686_04300 0.65 -0.1
892,414 - OH686_04300 0.65 +1.1
892,414 - OH686_04300 0.65 +0.4
892,539 - OH686_04300 0.78 +0.3
892,737 + +0.7
892,737 + -0.9
892,738 - +1.2
892,741 + +0.9
892,741 + -0.9
892,741 + -0.1
892,741 + -0.8
892,741 + -0.1
892,741 + -2.3
892,741 + +0.4
892,742 - -0.5
892,742 - +0.1
892,761 - -0.5
892,783 + -0.1
892,783 + -0.2
892,784 - +0.1
892,821 + -0.7
892,859 - +0.8
892,925 - OH686_04305 0.15 -0.4
892,933 + OH686_04305 0.15 -0.6
892,933 + OH686_04305 0.15 -0.3
892,933 + OH686_04305 0.15 +1.1
892,933 + OH686_04305 0.15 -1.0
892,933 + OH686_04305 0.15 +1.1
892,934 - OH686_04305 0.16 -1.0
892,934 - OH686_04305 0.16 -1.4
892,934 - OH686_04305 0.16 +0.3
892,934 - OH686_04305 0.16 -0.5
892,971 + OH686_04305 0.19 +0.8
892,971 + OH686_04305 0.19 +0.2
892,971 + OH686_04305 0.19 +0.8
892,971 + OH686_04305 0.19 -0.5
892,971 + OH686_04305 0.19 +0.2
892,971 + OH686_04305 0.19 -1.3
892,971 + OH686_04305 0.19 -0.5
892,971 + OH686_04305 0.19 +1.4
892,971 + OH686_04305 0.19 -1.0
892,972 - OH686_04305 0.19 +0.1
892,972 - OH686_04305 0.19 +0.1
892,972 - OH686_04305 0.19 +0.6
892,972 - OH686_04305 0.19 -0.6
892,972 - OH686_04305 0.19 +0.1
892,972 - OH686_04305 0.19 +0.1
892,972 - OH686_04305 0.19 -0.2
893,020 + OH686_04305 0.23 -0.1
893,021 - OH686_04305 0.23 -0.9
893,021 - OH686_04305 0.23 +1.0
893,021 - OH686_04305 0.23 -0.4
893,308 + OH686_04305 0.46 -0.5
893,308 + OH686_04305 0.46 +1.0
893,308 + OH686_04305 0.46 -0.8
893,308 + OH686_04305 0.46 +0.6
893,308 + OH686_04305 0.46 +0.5
893,308 + OH686_04305 0.46 -0.1
893,309 - OH686_04305 0.46 +0.4
893,309 - OH686_04305 0.46 -0.2
893,551 - OH686_04305 0.66 -1.6
893,692 + OH686_04305 0.77 +0.1
893,692 + OH686_04305 0.77 -0.0
893,692 + OH686_04305 0.77 +0.1
893,692 + OH686_04305 0.77 -0.3
893,692 + OH686_04305 0.77 +0.1
893,692 + OH686_04305 0.77 -0.2
893,693 - OH686_04305 0.77 +0.6
893,693 - OH686_04305 0.77 +0.3
893,693 - OH686_04305 0.77 -1.6
893,693 - OH686_04305 0.77 +0.7
893,693 - OH686_04305 0.77 +0.5
893,693 - OH686_04305 0.77 +0.0
893,693 - OH686_04305 0.77 +1.6
893,695 + OH686_04305 0.77 +0.2
893,695 + OH686_04305 0.77 -0.7
893,695 + OH686_04305 0.77 +0.3
893,695 + OH686_04305 0.77 +0.7
893,695 + OH686_04305 0.77 -0.1
893,695 + OH686_04305 0.77 +0.6
893,695 + OH686_04305 0.77 +0.4
893,695 + OH686_04305 0.77 -0.2
893,696 - OH686_04305 0.77 +0.6
893,696 - OH686_04305 0.77 +0.2
893,696 - OH686_04305 0.77 +0.4
893,696 - OH686_04305 0.77 -1.2
893,696 - OH686_04305 0.77 -0.2
893,696 - OH686_04305 0.77 +0.5
893,696 - OH686_04305 0.77 +0.0
893,696 - OH686_04305 0.77 -0.5
893,696 - OH686_04305 0.77 +0.1
893,696 - OH686_04305 0.77 -0.8

Or see this region's nucleotide sequence