Strain Fitness in Pseudomonas sp. S08-1 around OH686_03035

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03030 and OH686_03035 are separated by 1 nucleotidesOH686_03035 and OH686_03040 are separated by 127 nucleotidesOH686_03040 and OH686_03045 are separated by 16 nucleotides OH686_03030: OH686_03030 - Inner membrane protein, KefB/KefC family, at 633,833 to 635,791 _03030 OH686_03035: OH686_03035 - Transcriptional regulator, AcrR family, at 635,793 to 636,350 _03035 OH686_03040: OH686_03040 - Glutathione S-transferase, unnamed subgroup , at 636,478 to 637,074 _03040 OH686_03045: OH686_03045 - Zn-dependent hydrolase, at 637,091 to 638,029 _03045 Position (kb) 635 636 637Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 634.944 kb on + strand, within OH686_03030at 634.944 kb on + strand, within OH686_03030at 634.944 kb on + strand, within OH686_03030at 634.944 kb on + strand, within OH686_03030at 634.944 kb on + strand, within OH686_03030at 634.944 kb on + strand, within OH686_03030at 634.944 kb on + strand, within OH686_03030at 634.944 kb on + strand, within OH686_03030at 634.945 kb on - strand, within OH686_03030at 634.945 kb on - strand, within OH686_03030at 634.945 kb on - strand, within OH686_03030at 634.945 kb on - strand, within OH686_03030at 634.945 kb on - strand, within OH686_03030at 635.094 kb on + strand, within OH686_03030at 635.095 kb on - strand, within OH686_03030at 635.095 kb on - strand, within OH686_03030at 635.095 kb on - strand, within OH686_03030at 635.095 kb on - strand, within OH686_03030at 635.095 kb on - strand, within OH686_03030at 635.181 kb on - strand, within OH686_03030at 635.325 kb on + strand, within OH686_03030at 635.325 kb on + strand, within OH686_03030at 635.481 kb on + strand, within OH686_03030at 635.481 kb on + strand, within OH686_03030at 635.482 kb on - strand, within OH686_03030at 635.516 kb on + strand, within OH686_03030at 635.517 kb on - strand, within OH686_03030at 635.517 kb on - strand, within OH686_03030at 635.517 kb on - strand, within OH686_03030at 635.517 kb on - strand, within OH686_03030at 635.934 kb on + strand, within OH686_03035at 635.934 kb on + strand, within OH686_03035at 635.935 kb on - strand, within OH686_03035at 635.935 kb on - strand, within OH686_03035at 636.226 kb on + strand, within OH686_03035at 636.226 kb on + strand, within OH686_03035at 636.226 kb on + strand, within OH686_03035at 636.226 kb on + strand, within OH686_03035at 636.226 kb on + strand, within OH686_03035at 636.227 kb on - strand, within OH686_03035at 636.227 kb on - strand, within OH686_03035at 636.227 kb on - strand, within OH686_03035at 636.227 kb on - strand, within OH686_03035at 636.227 kb on - strand, within OH686_03035at 636.227 kb on - strand, within OH686_03035at 636.286 kb on + strand, within OH686_03035at 636.375 kb on - strandat 636.375 kb on - strandat 636.375 kb on - strandat 636.455 kb on + strandat 636.455 kb on + strandat 636.455 kb on + strandat 636.455 kb on + strandat 636.455 kb on + strandat 636.455 kb on + strandat 636.455 kb on + strandat 636.455 kb on + strandat 636.455 kb on + strandat 636.455 kb on + strandat 636.455 kb on + strandat 636.456 kb on - strandat 636.456 kb on - strandat 636.456 kb on - strandat 636.456 kb on - strandat 636.514 kb on + strandat 636.514 kb on + strandat 636.514 kb on + strandat 636.514 kb on + strandat 636.514 kb on + strandat 636.515 kb on - strandat 636.515 kb on - strandat 636.515 kb on - strandat 636.515 kb on - strandat 636.515 kb on - strandat 636.515 kb on - strandat 636.515 kb on - strandat 636.664 kb on + strand, within OH686_03040at 636.664 kb on + strand, within OH686_03040at 636.664 kb on + strand, within OH686_03040at 636.664 kb on + strand, within OH686_03040at 636.664 kb on + strand, within OH686_03040at 636.664 kb on + strand, within OH686_03040at 636.664 kb on + strand, within OH686_03040at 636.664 kb on + strand, within OH686_03040at 636.664 kb on + strand, within OH686_03040at 636.664 kb on + strand, within OH686_03040at 636.664 kb on + strand, within OH686_03040at 636.665 kb on - strand, within OH686_03040at 636.665 kb on - strand, within OH686_03040at 636.665 kb on - strand, within OH686_03040at 636.665 kb on - strand, within OH686_03040at 636.665 kb on - strand, within OH686_03040at 636.665 kb on - strand, within OH686_03040at 636.665 kb on - strand, within OH686_03040at 636.688 kb on + strand, within OH686_03040at 636.689 kb on - strand, within OH686_03040at 636.955 kb on + strand, within OH686_03040at 636.956 kb on - strand, within OH686_03040at 636.961 kb on + strand, within OH686_03040at 636.961 kb on + strand, within OH686_03040at 636.961 kb on + strand, within OH686_03040at 636.961 kb on + strand, within OH686_03040at 636.961 kb on + strand, within OH686_03040at 636.961 kb on + strand, within OH686_03040at 636.961 kb on + strand, within OH686_03040at 636.961 kb on + strand, within OH686_03040at 636.961 kb on + strand, within OH686_03040at 636.961 kb on + strand, within OH686_03040at 636.961 kb on + strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 636.962 kb on - strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.003 kb on + strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.004 kb on - strand, within OH686_03040at 637.073 kb on - strandat 637.090 kb on + strandat 637.091 kb on - strandat 637.091 kb on - strandat 637.091 kb on - strandat 637.091 kb on - strandat 637.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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634,944 + OH686_03030 0.57 -0.6
634,944 + OH686_03030 0.57 -0.9
634,944 + OH686_03030 0.57 +0.5
634,944 + OH686_03030 0.57 -0.0
634,944 + OH686_03030 0.57 +1.2
634,944 + OH686_03030 0.57 -0.9
634,944 + OH686_03030 0.57 -0.4
634,944 + OH686_03030 0.57 +0.4
634,945 - OH686_03030 0.57 -0.4
634,945 - OH686_03030 0.57 +0.8
634,945 - OH686_03030 0.57 +0.6
634,945 - OH686_03030 0.57 -0.0
634,945 - OH686_03030 0.57 -0.8
635,094 + OH686_03030 0.64 -0.4
635,095 - OH686_03030 0.64 -2.3
635,095 - OH686_03030 0.64 +2.0
635,095 - OH686_03030 0.64 -0.1
635,095 - OH686_03030 0.64 -0.2
635,095 - OH686_03030 0.64 -0.2
635,181 - OH686_03030 0.69 +0.2
635,325 + OH686_03030 0.76 -1.1
635,325 + OH686_03030 0.76 +0.4
635,481 + OH686_03030 0.84 -0.3
635,481 + OH686_03030 0.84 +0.4
635,482 - OH686_03030 0.84 -0.8
635,516 + OH686_03030 0.86 +0.3
635,517 - OH686_03030 0.86 +0.6
635,517 - OH686_03030 0.86 -0.5
635,517 - OH686_03030 0.86 +0.3
635,517 - OH686_03030 0.86 -0.2
635,934 + OH686_03035 0.25 +0.5
635,934 + OH686_03035 0.25 +0.7
635,935 - OH686_03035 0.25 +0.2
635,935 - OH686_03035 0.25 +1.5
636,226 + OH686_03035 0.78 +1.6
636,226 + OH686_03035 0.78 +0.6
636,226 + OH686_03035 0.78 +0.2
636,226 + OH686_03035 0.78 +1.3
636,226 + OH686_03035 0.78 +0.6
636,227 - OH686_03035 0.78 +0.3
636,227 - OH686_03035 0.78 +0.8
636,227 - OH686_03035 0.78 +0.3
636,227 - OH686_03035 0.78 +0.1
636,227 - OH686_03035 0.78 -0.6
636,227 - OH686_03035 0.78 +0.3
636,286 + OH686_03035 0.88 +0.1
636,375 - -0.3
636,375 - +0.1
636,375 - +0.5
636,455 + +0.5
636,455 + +1.4
636,455 + +0.4
636,455 + +0.6
636,455 + +1.1
636,455 + -0.4
636,455 + -1.0
636,455 + -0.2
636,455 + +0.6
636,455 + +0.6
636,455 + -1.5
636,456 - -0.9
636,456 - -0.7
636,456 - -0.0
636,456 - +0.5
636,514 + +0.1
636,514 + -0.6
636,514 + -1.4
636,514 + -0.8
636,514 + +0.1
636,515 - +0.2
636,515 - -0.2
636,515 - -0.3
636,515 - +0.1
636,515 - +2.2
636,515 - +0.6
636,515 - -0.2
636,664 + OH686_03040 0.31 -0.5
636,664 + OH686_03040 0.31 -0.3
636,664 + OH686_03040 0.31 +0.4
636,664 + OH686_03040 0.31 +0.5
636,664 + OH686_03040 0.31 +0.7
636,664 + OH686_03040 0.31 +0.7
636,664 + OH686_03040 0.31 -0.0
636,664 + OH686_03040 0.31 +0.0
636,664 + OH686_03040 0.31 -0.7
636,664 + OH686_03040 0.31 -0.3
636,664 + OH686_03040 0.31 +0.3
636,665 - OH686_03040 0.31 -0.5
636,665 - OH686_03040 0.31 -0.0
636,665 - OH686_03040 0.31 -1.3
636,665 - OH686_03040 0.31 -0.5
636,665 - OH686_03040 0.31 +0.1
636,665 - OH686_03040 0.31 +1.7
636,665 - OH686_03040 0.31 -0.2
636,688 + OH686_03040 0.35 +0.4
636,689 - OH686_03040 0.35 +0.2
636,955 + OH686_03040 0.80 +0.1
636,956 - OH686_03040 0.80 -0.8
636,961 + OH686_03040 0.81 -0.5
636,961 + OH686_03040 0.81 +1.4
636,961 + OH686_03040 0.81 -0.7
636,961 + OH686_03040 0.81 -0.0
636,961 + OH686_03040 0.81 -0.7
636,961 + OH686_03040 0.81 -0.2
636,961 + OH686_03040 0.81 +0.4
636,961 + OH686_03040 0.81 -0.4
636,961 + OH686_03040 0.81 +0.2
636,961 + OH686_03040 0.81 +0.4
636,961 + OH686_03040 0.81 +0.1
636,962 - OH686_03040 0.81 -0.6
636,962 - OH686_03040 0.81 +0.7
636,962 - OH686_03040 0.81 -0.2
636,962 - OH686_03040 0.81 -0.0
636,962 - OH686_03040 0.81 +1.3
636,962 - OH686_03040 0.81 +0.8
636,962 - OH686_03040 0.81 +1.4
636,962 - OH686_03040 0.81 +0.8
636,962 - OH686_03040 0.81 -0.2
636,962 - OH686_03040 0.81 -0.9
636,962 - OH686_03040 0.81 -1.5
636,962 - OH686_03040 0.81 +0.6
636,962 - OH686_03040 0.81 -0.0
636,962 - OH686_03040 0.81 -2.9
637,003 + OH686_03040 0.88 +0.0
637,003 + OH686_03040 0.88 +0.9
637,003 + OH686_03040 0.88 -0.3
637,003 + OH686_03040 0.88 +0.7
637,003 + OH686_03040 0.88 -0.1
637,003 + OH686_03040 0.88 -0.7
637,003 + OH686_03040 0.88 -0.4
637,003 + OH686_03040 0.88 -0.3
637,003 + OH686_03040 0.88 -0.4
637,003 + OH686_03040 0.88 -0.6
637,003 + OH686_03040 0.88 -0.1
637,003 + OH686_03040 0.88 -0.0
637,003 + OH686_03040 0.88 -0.5
637,003 + OH686_03040 0.88 +1.4
637,003 + OH686_03040 0.88 +0.6
637,003 + OH686_03040 0.88 -0.6
637,003 + OH686_03040 0.88 -0.1
637,003 + OH686_03040 0.88 -0.1
637,004 - OH686_03040 0.88 -0.5
637,004 - OH686_03040 0.88 +0.5
637,004 - OH686_03040 0.88 -0.0
637,004 - OH686_03040 0.88 -0.7
637,004 - OH686_03040 0.88 -0.4
637,004 - OH686_03040 0.88 +0.9
637,004 - OH686_03040 0.88 -0.9
637,004 - OH686_03040 0.88 +0.1
637,004 - OH686_03040 0.88 -0.2
637,004 - OH686_03040 0.88 +1.3
637,004 - OH686_03040 0.88 -0.3
637,004 - OH686_03040 0.88 -0.9
637,004 - OH686_03040 0.88 -1.1
637,004 - OH686_03040 0.88 -0.6
637,073 - +0.2
637,090 + +1.4
637,091 - +0.9
637,091 - -1.7
637,091 - +0.4
637,091 - +1.2
637,141 + -0.7

Or see this region's nucleotide sequence