Strain Fitness in Pseudomonas sp. S08-1 around OH686_02820

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02805 and OH686_02810 are separated by 5 nucleotidesOH686_02810 and OH686_02815 are separated by 70 nucleotidesOH686_02815 and OH686_02820 are separated by 3 nucleotidesOH686_02820 and OH686_02825 overlap by 11 nucleotidesOH686_02825 and OH686_02830 are separated by 3 nucleotides OH686_02805: OH686_02805 - Serine phosphatase RsbU, regulator of sigma subunit / Serine-protein kinase RsbW , at 588,552 to 590,246 _02805 OH686_02810: OH686_02810 - Anti-sigma B factor antagonist RsbV, at 590,252 to 590,557 _02810 OH686_02815: OH686_02815 - flagellar export protein FliJ, at 590,628 to 591,077 _02815 OH686_02820: OH686_02820 - flagellar protein export ATPase FliI, at 591,081 to 592,439 _02820 OH686_02825: OH686_02825 - Flagellar assembly protein FliH, at 592,429 to 593,211 _02825 OH686_02830: OH686_02830 - flagellar motor switch protein FliG, at 593,215 to 594,231 _02830 Position (kb) 591 592 593Strain fitness (log2 ratio) -2 -1 0 1 2at 590.400 kb on + strand, within OH686_02810at 590.400 kb on + strand, within OH686_02810at 590.400 kb on + strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.427 kb on + strand, within OH686_02810at 590.427 kb on + strand, within OH686_02810at 590.427 kb on + strand, within OH686_02810at 590.427 kb on + strand, within OH686_02810at 590.428 kb on - strand, within OH686_02810at 590.457 kb on + strand, within OH686_02810at 590.457 kb on + strand, within OH686_02810at 590.457 kb on + strand, within OH686_02810at 590.457 kb on + strand, within OH686_02810at 590.458 kb on - strand, within OH686_02810at 590.458 kb on - strand, within OH686_02810at 590.540 kb on + strandat 590.540 kb on + strandat 590.541 kb on - strandat 590.559 kb on + strandat 590.560 kb on - strandat 590.560 kb on - strandat 590.560 kb on - strandat 590.560 kb on - strandat 590.560 kb on - strandat 590.560 kb on - strandat 590.579 kb on + strandat 590.579 kb on + strandat 590.580 kb on - strandat 590.580 kb on - strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.719 kb on + strand, within OH686_02815at 590.720 kb on - strand, within OH686_02815at 590.736 kb on - strand, within OH686_02815at 590.736 kb on - strand, within OH686_02815at 590.756 kb on + strand, within OH686_02815at 590.756 kb on + strand, within OH686_02815at 590.756 kb on + strand, within OH686_02815at 590.757 kb on - strand, within OH686_02815at 590.757 kb on - strand, within OH686_02815at 590.757 kb on - strand, within OH686_02815at 590.758 kb on + strand, within OH686_02815at 590.758 kb on + strand, within OH686_02815at 590.758 kb on + strand, within OH686_02815at 590.759 kb on - strand, within OH686_02815at 590.759 kb on - strand, within OH686_02815at 590.759 kb on - strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.870 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 591.079 kb on + strandat 591.079 kb on + strandat 591.079 kb on + strandat 591.079 kb on + strandat 591.079 kb on + strandat 591.080 kb on - strandat 591.080 kb on - strandat 591.080 kb on - strandat 591.080 kb on - strandat 591.170 kb on - strandat 591.170 kb on - strandat 591.170 kb on - strandat 591.232 kb on + strand, within OH686_02820at 591.232 kb on + strand, within OH686_02820at 591.232 kb on + strand, within OH686_02820at 591.232 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.685 kb on + strand, within OH686_02820at 591.685 kb on + strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.899 kb on + strand, within OH686_02820at 591.899 kb on + strand, within OH686_02820at 591.900 kb on - strand, within OH686_02820at 591.900 kb on - strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.261 kb on + strand, within OH686_02820at 592.261 kb on + strand, within OH686_02820at 592.261 kb on + strand, within OH686_02820at 592.261 kb on + strand, within OH686_02820at 592.261 kb on + strand, within OH686_02820at 592.262 kb on - strand, within OH686_02820at 592.262 kb on - strand, within OH686_02820at 592.262 kb on - strand, within OH686_02820at 592.262 kb on - strand, within OH686_02820at 592.262 kb on - strand, within OH686_02820at 592.680 kb on + strand, within OH686_02825at 592.680 kb on + strand, within OH686_02825at 592.680 kb on + strand, within OH686_02825at 592.681 kb on - strand, within OH686_02825at 592.982 kb on + strand, within OH686_02825at 592.982 kb on + strand, within OH686_02825at 592.983 kb on - strand, within OH686_02825at 592.983 kb on - strand, within OH686_02825at 592.983 kb on - strand, within OH686_02825at 593.216 kb on + strandat 593.216 kb on + strandat 593.216 kb on + strandat 593.216 kb on + strandat 593.217 kb on - strandat 593.217 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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590,400 + OH686_02810 0.48 -0.8
590,400 + OH686_02810 0.48 +0.3
590,400 + OH686_02810 0.48 +0.5
590,401 - OH686_02810 0.49 -0.3
590,401 - OH686_02810 0.49 -0.2
590,401 - OH686_02810 0.49 -0.5
590,401 - OH686_02810 0.49 -0.1
590,401 - OH686_02810 0.49 -0.1
590,401 - OH686_02810 0.49 -2.6
590,427 + OH686_02810 0.57 -0.5
590,427 + OH686_02810 0.57 -0.4
590,427 + OH686_02810 0.57 -0.9
590,427 + OH686_02810 0.57 -1.0
590,428 - OH686_02810 0.58 +0.2
590,457 + OH686_02810 0.67 +0.4
590,457 + OH686_02810 0.67 -1.5
590,457 + OH686_02810 0.67 +0.5
590,457 + OH686_02810 0.67 +0.5
590,458 - OH686_02810 0.67 +1.2
590,458 - OH686_02810 0.67 -0.3
590,540 + -0.6
590,540 + +0.2
590,541 - +0.9
590,559 + -0.4
590,560 - -0.6
590,560 - +0.1
590,560 - +0.7
590,560 - -0.1
590,560 - +1.0
590,560 - +0.1
590,579 + -0.0
590,579 + +0.4
590,580 - -0.2
590,580 - +1.2
590,596 + -0.2
590,596 + -0.4
590,596 + -0.4
590,596 + +0.6
590,596 + -0.3
590,596 + -1.0
590,596 + +0.1
590,596 + +0.2
590,597 - +0.4
590,597 - -0.5
590,597 - +0.0
590,597 - +0.5
590,597 - +0.2
590,597 - -2.1
590,597 - -0.0
590,597 - -1.1
590,597 - -0.8
590,719 + OH686_02815 0.20 -0.8
590,720 - OH686_02815 0.20 +1.0
590,736 - OH686_02815 0.24 -0.4
590,736 - OH686_02815 0.24 +0.7
590,756 + OH686_02815 0.28 +1.7
590,756 + OH686_02815 0.28 +0.0
590,756 + OH686_02815 0.28 +0.5
590,757 - OH686_02815 0.29 -0.1
590,757 - OH686_02815 0.29 +0.2
590,757 - OH686_02815 0.29 -0.6
590,758 + OH686_02815 0.29 +0.4
590,758 + OH686_02815 0.29 +0.1
590,758 + OH686_02815 0.29 +0.6
590,759 - OH686_02815 0.29 +0.9
590,759 - OH686_02815 0.29 -0.3
590,759 - OH686_02815 0.29 -0.1
590,866 + OH686_02815 0.53 +0.7
590,866 + OH686_02815 0.53 +0.5
590,866 + OH686_02815 0.53 -1.2
590,866 + OH686_02815 0.53 +0.2
590,866 + OH686_02815 0.53 +0.1
590,866 + OH686_02815 0.53 +0.4
590,867 - OH686_02815 0.53 -1.4
590,867 - OH686_02815 0.53 -0.0
590,867 - OH686_02815 0.53 -1.1
590,867 - OH686_02815 0.53 +0.4
590,867 - OH686_02815 0.53 -0.4
590,867 - OH686_02815 0.53 +1.6
590,870 + OH686_02815 0.54 -0.9
590,990 + OH686_02815 0.80 +0.5
590,990 + OH686_02815 0.80 -0.3
590,990 + OH686_02815 0.80 -0.9
590,990 + OH686_02815 0.80 +0.8
590,990 + OH686_02815 0.80 -0.7
590,990 + OH686_02815 0.80 +1.0
590,990 + OH686_02815 0.80 -0.2
590,990 + OH686_02815 0.80 +0.1
590,990 + OH686_02815 0.80 +0.3
590,990 + OH686_02815 0.80 +0.2
590,990 + OH686_02815 0.80 -1.9
590,990 + OH686_02815 0.80 +0.4
590,991 - OH686_02815 0.81 +0.8
590,991 - OH686_02815 0.81 -0.9
590,991 - OH686_02815 0.81 -0.8
590,991 - OH686_02815 0.81 +0.0
590,991 - OH686_02815 0.81 -0.0
590,991 - OH686_02815 0.81 -1.0
590,991 - OH686_02815 0.81 -0.4
590,991 - OH686_02815 0.81 +0.3
590,991 - OH686_02815 0.81 +0.9
590,991 - OH686_02815 0.81 -0.6
591,079 + -1.2
591,079 + -0.6
591,079 + +1.2
591,079 + +0.2
591,079 + +1.2
591,080 - -1.0
591,080 - +0.1
591,080 - -0.4
591,080 - -1.9
591,170 - +0.7
591,170 - +0.5
591,170 - -0.5
591,232 + OH686_02820 0.11 +0.7
591,232 + OH686_02820 0.11 +0.6
591,232 + OH686_02820 0.11 +0.4
591,232 + OH686_02820 0.11 -0.0
591,484 + OH686_02820 0.30 -0.2
591,484 + OH686_02820 0.30 +1.5
591,484 + OH686_02820 0.30 +0.4
591,484 + OH686_02820 0.30 +0.9
591,484 + OH686_02820 0.30 +1.2
591,484 + OH686_02820 0.30 +1.1
591,484 + OH686_02820 0.30 +0.7
591,484 + OH686_02820 0.30 +1.8
591,484 + OH686_02820 0.30 -0.2
591,485 - OH686_02820 0.30 +0.1
591,485 - OH686_02820 0.30 +0.8
591,485 - OH686_02820 0.30 +0.2
591,485 - OH686_02820 0.30 +0.0
591,485 - OH686_02820 0.30 -0.1
591,485 - OH686_02820 0.30 -0.0
591,485 - OH686_02820 0.30 +0.3
591,685 + OH686_02820 0.44 +0.0
591,685 + OH686_02820 0.44 +0.5
591,686 - OH686_02820 0.45 +0.7
591,686 - OH686_02820 0.45 +0.3
591,686 - OH686_02820 0.45 -0.4
591,686 - OH686_02820 0.45 -0.7
591,686 - OH686_02820 0.45 +0.3
591,686 - OH686_02820 0.45 +0.9
591,706 + OH686_02820 0.46 +1.3
591,706 + OH686_02820 0.46 +1.0
591,706 + OH686_02820 0.46 +0.1
591,706 + OH686_02820 0.46 -0.1
591,706 + OH686_02820 0.46 -0.1
591,706 + OH686_02820 0.46 -0.8
591,706 + OH686_02820 0.46 +0.8
591,706 + OH686_02820 0.46 +0.5
591,706 + OH686_02820 0.46 -0.8
591,706 + OH686_02820 0.46 +0.8
591,706 + OH686_02820 0.46 -0.4
591,706 + OH686_02820 0.46 +0.5
591,706 + OH686_02820 0.46 +0.5
591,706 + OH686_02820 0.46 +0.7
591,707 - OH686_02820 0.46 +0.8
591,707 - OH686_02820 0.46 -0.0
591,707 - OH686_02820 0.46 +0.5
591,707 - OH686_02820 0.46 +0.4
591,707 - OH686_02820 0.46 +1.3
591,707 - OH686_02820 0.46 +0.5
591,707 - OH686_02820 0.46 +0.1
591,707 - OH686_02820 0.46 +0.5
591,707 - OH686_02820 0.46 +0.3
591,707 - OH686_02820 0.46 +0.6
591,707 - OH686_02820 0.46 -0.1
591,707 - OH686_02820 0.46 +0.8
591,707 - OH686_02820 0.46 +1.8
591,707 - OH686_02820 0.46 +0.3
591,899 + OH686_02820 0.60 +0.5
591,899 + OH686_02820 0.60 +0.7
591,900 - OH686_02820 0.60 +0.4
591,900 - OH686_02820 0.60 -0.4
592,207 + OH686_02820 0.83 +0.3
592,207 + OH686_02820 0.83 +0.1
592,207 + OH686_02820 0.83 +0.1
592,207 + OH686_02820 0.83 +1.0
592,207 + OH686_02820 0.83 +0.6
592,207 + OH686_02820 0.83 +0.5
592,208 - OH686_02820 0.83 +1.5
592,208 - OH686_02820 0.83 +0.5
592,208 - OH686_02820 0.83 +0.7
592,208 - OH686_02820 0.83 +0.1
592,208 - OH686_02820 0.83 +0.5
592,208 - OH686_02820 0.83 +0.6
592,208 - OH686_02820 0.83 -0.2
592,261 + OH686_02820 0.87 +0.3
592,261 + OH686_02820 0.87 +0.3
592,261 + OH686_02820 0.87 +1.6
592,261 + OH686_02820 0.87 +0.0
592,261 + OH686_02820 0.87 +0.4
592,262 - OH686_02820 0.87 +0.6
592,262 - OH686_02820 0.87 +0.8
592,262 - OH686_02820 0.87 +1.1
592,262 - OH686_02820 0.87 +0.4
592,262 - OH686_02820 0.87 -0.5
592,680 + OH686_02825 0.32 +1.1
592,680 + OH686_02825 0.32 +0.0
592,680 + OH686_02825 0.32 +0.9
592,681 - OH686_02825 0.32 +0.6
592,982 + OH686_02825 0.71 +0.1
592,982 + OH686_02825 0.71 +1.1
592,983 - OH686_02825 0.71 +0.9
592,983 - OH686_02825 0.71 +1.0
592,983 - OH686_02825 0.71 +0.7
593,216 + -1.6
593,216 + +0.6
593,216 + +1.1
593,216 + +1.1
593,217 - +0.3
593,217 - -1.6

Or see this region's nucleotide sequence