Strain Fitness in Pseudomonas sp. S08-1 around OH686_02450

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02440 and OH686_02445 are separated by 71 nucleotidesOH686_02445 and OH686_02450 are separated by 21 nucleotidesOH686_02450 and OH686_02455 are separated by 87 nucleotides OH686_02440: OH686_02440 - Phosphogluconate repressor HexR, RpiR family, at 518,787 to 519,656 _02440 OH686_02445: OH686_02445 - Aldose 1-epimerase, at 519,728 to 520,624 _02445 OH686_02450: OH686_02450 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 520,646 to 521,887 _02450 OH686_02455: OH686_02455 - Glucose ABC transporter, ATP-binding subunit , at 521,975 to 523,129 _02455 Position (kb) 520 521 522Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 519.659 kb on + strandat 519.659 kb on + strandat 519.660 kb on - strandat 519.660 kb on - strandat 519.696 kb on + strandat 520.085 kb on + strand, within OH686_02445at 520.085 kb on + strand, within OH686_02445at 520.086 kb on - strand, within OH686_02445at 520.086 kb on - strand, within OH686_02445at 520.086 kb on - strand, within OH686_02445at 520.086 kb on - strand, within OH686_02445at 520.086 kb on - strand, within OH686_02445at 520.104 kb on + strand, within OH686_02445at 520.104 kb on + strand, within OH686_02445at 520.104 kb on + strand, within OH686_02445at 520.104 kb on + strand, within OH686_02445at 520.105 kb on - strand, within OH686_02445at 520.105 kb on - strand, within OH686_02445at 520.105 kb on - strand, within OH686_02445at 520.105 kb on - strand, within OH686_02445at 520.659 kb on + strandat 520.659 kb on + strandat 520.782 kb on + strand, within OH686_02450at 520.782 kb on + strand, within OH686_02450at 520.783 kb on - strand, within OH686_02450at 520.783 kb on - strand, within OH686_02450at 520.783 kb on - strand, within OH686_02450at 520.783 kb on - strand, within OH686_02450at 520.783 kb on - strand, within OH686_02450at 520.783 kb on - strand, within OH686_02450at 520.783 kb on - strand, within OH686_02450at 520.783 kb on - strand, within OH686_02450at 520.788 kb on + strand, within OH686_02450at 520.788 kb on + strand, within OH686_02450at 520.788 kb on + strand, within OH686_02450at 520.788 kb on + strand, within OH686_02450at 520.788 kb on + strand, within OH686_02450at 520.788 kb on + strand, within OH686_02450at 520.789 kb on - strand, within OH686_02450at 520.789 kb on - strand, within OH686_02450at 520.789 kb on - strand, within OH686_02450at 520.789 kb on - strand, within OH686_02450at 520.789 kb on - strand, within OH686_02450at 520.789 kb on - strand, within OH686_02450at 520.791 kb on + strand, within OH686_02450at 520.791 kb on + strand, within OH686_02450at 520.791 kb on + strand, within OH686_02450at 520.791 kb on + strand, within OH686_02450at 520.791 kb on + strand, within OH686_02450at 520.792 kb on - strand, within OH686_02450at 520.792 kb on - strand, within OH686_02450at 520.792 kb on - strand, within OH686_02450at 520.792 kb on - strand, within OH686_02450at 520.792 kb on - strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.944 kb on + strand, within OH686_02450at 520.945 kb on - strand, within OH686_02450at 520.945 kb on - strand, within OH686_02450at 520.945 kb on - strand, within OH686_02450at 520.945 kb on - strand, within OH686_02450at 520.945 kb on - strand, within OH686_02450at 521.011 kb on - strand, within OH686_02450at 521.011 kb on - strand, within OH686_02450at 521.115 kb on + strand, within OH686_02450at 521.115 kb on + strand, within OH686_02450at 521.115 kb on + strand, within OH686_02450at 521.116 kb on - strand, within OH686_02450at 521.116 kb on - strand, within OH686_02450at 521.145 kb on + strand, within OH686_02450at 521.146 kb on - strand, within OH686_02450at 521.146 kb on - strand, within OH686_02450at 521.248 kb on + strand, within OH686_02450at 521.250 kb on + strand, within OH686_02450at 521.250 kb on + strand, within OH686_02450at 521.250 kb on + strand, within OH686_02450at 521.250 kb on + strand, within OH686_02450at 521.250 kb on + strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.326 kb on - strand, within OH686_02450at 521.326 kb on - strand, within OH686_02450at 521.326 kb on - strand, within OH686_02450at 521.326 kb on - strand, within OH686_02450at 521.340 kb on + strand, within OH686_02450at 521.340 kb on + strand, within OH686_02450at 521.340 kb on + strand, within OH686_02450at 521.341 kb on - strand, within OH686_02450at 521.341 kb on - strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.430 kb on + strand, within OH686_02450at 521.433 kb on + strand, within OH686_02450at 521.433 kb on + strand, within OH686_02450at 521.433 kb on + strand, within OH686_02450at 521.433 kb on + strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.466 kb on + strand, within OH686_02450at 521.466 kb on + strand, within OH686_02450at 521.466 kb on + strand, within OH686_02450at 521.467 kb on - strand, within OH686_02450at 521.467 kb on - strand, within OH686_02450at 521.467 kb on - strand, within OH686_02450at 521.529 kb on + strand, within OH686_02450at 521.529 kb on + strand, within OH686_02450at 521.530 kb on - strand, within OH686_02450at 521.530 kb on - strand, within OH686_02450at 521.557 kb on - strand, within OH686_02450at 521.595 kb on + strand, within OH686_02450at 521.595 kb on + strand, within OH686_02450at 521.595 kb on + strand, within OH686_02450at 521.595 kb on + strand, within OH686_02450at 521.595 kb on + strand, within OH686_02450at 521.596 kb on - strand, within OH686_02450at 521.596 kb on - strand, within OH686_02450at 521.596 kb on - strand, within OH686_02450at 521.596 kb on - strand, within OH686_02450at 521.596 kb on - strand, within OH686_02450at 521.676 kb on + strand, within OH686_02450at 521.677 kb on - strand, within OH686_02450at 521.703 kb on + strand, within OH686_02450at 521.704 kb on - strand, within OH686_02450at 521.782 kb on - strandat 521.872 kb on + strandat 521.872 kb on + strandat 521.873 kb on - strandat 521.873 kb on - strandat 521.873 kb on - strandat 521.873 kb on - strandat 521.873 kb on - strandat 521.888 kb on - strandat 521.906 kb on + strandat 521.906 kb on + strandat 521.906 kb on + strandat 521.907 kb on - strandat 521.907 kb on - strandat 521.907 kb on - strandat 521.914 kb on + strandat 521.914 kb on + strandat 521.914 kb on + strandat 521.914 kb on + strandat 521.915 kb on - strandat 521.915 kb on - strandat 521.915 kb on - strandat 521.915 kb on - strandat 521.915 kb on - strandat 521.915 kb on - strandat 521.976 kb on + strandat 522.002 kb on - strandat 522.357 kb on - strand, within OH686_02455at 522.459 kb on + strand, within OH686_02455at 522.460 kb on - strand, within OH686_02455at 522.460 kb on - strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.660 kb on + strand, within OH686_02455at 522.660 kb on + strand, within OH686_02455at 522.660 kb on + strand, within OH686_02455at 522.660 kb on + strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.873 kb on + strand, within OH686_02455

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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519,659 + +1.3
519,659 + -0.6
519,660 - +1.1
519,660 - +1.3
519,696 + +1.3
520,085 + OH686_02445 0.40 +0.3
520,085 + OH686_02445 0.40 -1.3
520,086 - OH686_02445 0.40 +1.1
520,086 - OH686_02445 0.40 +1.0
520,086 - OH686_02445 0.40 +1.2
520,086 - OH686_02445 0.40 +2.0
520,086 - OH686_02445 0.40 +1.1
520,104 + OH686_02445 0.42 -0.4
520,104 + OH686_02445 0.42 +1.1
520,104 + OH686_02445 0.42 -0.8
520,104 + OH686_02445 0.42 +1.4
520,105 - OH686_02445 0.42 +1.7
520,105 - OH686_02445 0.42 +2.2
520,105 - OH686_02445 0.42 +1.1
520,105 - OH686_02445 0.42 +1.9
520,659 + +0.5
520,659 + -0.2
520,782 + OH686_02450 0.11 -0.3
520,782 + OH686_02450 0.11 +0.9
520,783 - OH686_02450 0.11 +0.6
520,783 - OH686_02450 0.11 +2.9
520,783 - OH686_02450 0.11 +1.2
520,783 - OH686_02450 0.11 +0.5
520,783 - OH686_02450 0.11 +1.6
520,783 - OH686_02450 0.11 +0.9
520,783 - OH686_02450 0.11 +0.8
520,783 - OH686_02450 0.11 +2.1
520,788 + OH686_02450 0.11 +0.9
520,788 + OH686_02450 0.11 +0.9
520,788 + OH686_02450 0.11 +0.8
520,788 + OH686_02450 0.11 +0.6
520,788 + OH686_02450 0.11 +0.0
520,788 + OH686_02450 0.11 -0.1
520,789 - OH686_02450 0.12 +1.0
520,789 - OH686_02450 0.12 +1.2
520,789 - OH686_02450 0.12 +0.5
520,789 - OH686_02450 0.12 +0.0
520,789 - OH686_02450 0.12 +1.1
520,789 - OH686_02450 0.12 -0.2
520,791 + OH686_02450 0.12 +0.4
520,791 + OH686_02450 0.12 -0.3
520,791 + OH686_02450 0.12 +0.9
520,791 + OH686_02450 0.12 +0.0
520,791 + OH686_02450 0.12 +0.6
520,792 - OH686_02450 0.12 +1.7
520,792 - OH686_02450 0.12 +1.4
520,792 - OH686_02450 0.12 +2.2
520,792 - OH686_02450 0.12 +0.4
520,792 - OH686_02450 0.12 +0.0
520,944 + OH686_02450 0.24 +0.9
520,944 + OH686_02450 0.24 -0.3
520,944 + OH686_02450 0.24 +2.0
520,944 + OH686_02450 0.24 +0.6
520,944 + OH686_02450 0.24 +1.2
520,944 + OH686_02450 0.24 -0.3
520,944 + OH686_02450 0.24 -0.7
520,944 + OH686_02450 0.24 -0.1
520,944 + OH686_02450 0.24 +0.0
520,944 + OH686_02450 0.24 +0.5
520,944 + OH686_02450 0.24 +0.1
520,944 + OH686_02450 0.24 -0.0
520,945 - OH686_02450 0.24 +1.3
520,945 - OH686_02450 0.24 +0.8
520,945 - OH686_02450 0.24 +1.2
520,945 - OH686_02450 0.24 +0.7
520,945 - OH686_02450 0.24 +0.7
521,011 - OH686_02450 0.29 +0.4
521,011 - OH686_02450 0.29 -0.5
521,115 + OH686_02450 0.38 -0.9
521,115 + OH686_02450 0.38 -0.4
521,115 + OH686_02450 0.38 -0.7
521,116 - OH686_02450 0.38 +0.6
521,116 - OH686_02450 0.38 +1.4
521,145 + OH686_02450 0.40 +0.1
521,146 - OH686_02450 0.40 +1.0
521,146 - OH686_02450 0.40 +0.4
521,248 + OH686_02450 0.48 +0.1
521,250 + OH686_02450 0.49 -0.1
521,250 + OH686_02450 0.49 -0.0
521,250 + OH686_02450 0.49 +0.2
521,250 + OH686_02450 0.49 -0.2
521,250 + OH686_02450 0.49 +0.2
521,251 - OH686_02450 0.49 -0.2
521,251 - OH686_02450 0.49 +1.9
521,251 - OH686_02450 0.49 +1.5
521,251 - OH686_02450 0.49 +0.2
521,251 - OH686_02450 0.49 +1.3
521,251 - OH686_02450 0.49 +1.9
521,251 - OH686_02450 0.49 +0.9
521,251 - OH686_02450 0.49 +0.6
521,251 - OH686_02450 0.49 +0.2
521,251 - OH686_02450 0.49 -0.2
521,325 + OH686_02450 0.55 -1.1
521,325 + OH686_02450 0.55 -0.9
521,325 + OH686_02450 0.55 +0.4
521,325 + OH686_02450 0.55 -1.1
521,325 + OH686_02450 0.55 +0.6
521,325 + OH686_02450 0.55 -0.1
521,326 - OH686_02450 0.55 +1.7
521,326 - OH686_02450 0.55 +0.3
521,326 - OH686_02450 0.55 +1.7
521,326 - OH686_02450 0.55 -0.2
521,340 + OH686_02450 0.56 -0.0
521,340 + OH686_02450 0.56 -0.5
521,340 + OH686_02450 0.56 -1.5
521,341 - OH686_02450 0.56 +0.7
521,341 - OH686_02450 0.56 +0.1
521,364 + OH686_02450 0.58 -0.1
521,364 + OH686_02450 0.58 -0.5
521,364 + OH686_02450 0.58 +0.5
521,364 + OH686_02450 0.58 -0.9
521,364 + OH686_02450 0.58 -0.2
521,364 + OH686_02450 0.58 -0.2
521,364 + OH686_02450 0.58 +0.3
521,364 + OH686_02450 0.58 -1.2
521,364 + OH686_02450 0.58 +0.6
521,364 + OH686_02450 0.58 +0.6
521,365 - OH686_02450 0.58 +0.3
521,365 - OH686_02450 0.58 +1.3
521,365 - OH686_02450 0.58 +0.6
521,365 - OH686_02450 0.58 +0.8
521,365 - OH686_02450 0.58 +1.5
521,365 - OH686_02450 0.58 +0.8
521,365 - OH686_02450 0.58 +1.4
521,365 - OH686_02450 0.58 +0.3
521,365 - OH686_02450 0.58 +1.8
521,365 - OH686_02450 0.58 +1.6
521,365 - OH686_02450 0.58 +0.9
521,365 - OH686_02450 0.58 -0.0
521,370 + OH686_02450 0.58 +0.4
521,370 + OH686_02450 0.58 -0.2
521,370 + OH686_02450 0.58 +1.1
521,370 + OH686_02450 0.58 -0.0
521,370 + OH686_02450 0.58 +0.3
521,370 + OH686_02450 0.58 +1.2
521,370 + OH686_02450 0.58 +0.4
521,370 + OH686_02450 0.58 -0.5
521,370 + OH686_02450 0.58 -0.9
521,371 - OH686_02450 0.58 +1.2
521,371 - OH686_02450 0.58 +1.1
521,371 - OH686_02450 0.58 +0.1
521,371 - OH686_02450 0.58 +1.0
521,371 - OH686_02450 0.58 -0.3
521,371 - OH686_02450 0.58 +0.4
521,371 - OH686_02450 0.58 -0.2
521,430 + OH686_02450 0.63 +0.1
521,433 + OH686_02450 0.63 -0.3
521,433 + OH686_02450 0.63 +3.2
521,433 + OH686_02450 0.63 +0.2
521,433 + OH686_02450 0.63 +0.1
521,434 - OH686_02450 0.63 +1.3
521,434 - OH686_02450 0.63 +1.7
521,434 - OH686_02450 0.63 +1.4
521,434 - OH686_02450 0.63 +1.3
521,434 - OH686_02450 0.63 +1.0
521,434 - OH686_02450 0.63 +0.1
521,466 + OH686_02450 0.66 -0.2
521,466 + OH686_02450 0.66 -0.6
521,466 + OH686_02450 0.66 +0.6
521,467 - OH686_02450 0.66 +0.7
521,467 - OH686_02450 0.66 +0.3
521,467 - OH686_02450 0.66 +0.8
521,529 + OH686_02450 0.71 -0.9
521,529 + OH686_02450 0.71 -0.5
521,530 - OH686_02450 0.71 +0.6
521,530 - OH686_02450 0.71 +0.3
521,557 - OH686_02450 0.73 +0.5
521,595 + OH686_02450 0.76 +0.0
521,595 + OH686_02450 0.76 -0.1
521,595 + OH686_02450 0.76 -1.8
521,595 + OH686_02450 0.76 -0.6
521,595 + OH686_02450 0.76 -2.4
521,596 - OH686_02450 0.76 +1.7
521,596 - OH686_02450 0.76 +0.3
521,596 - OH686_02450 0.76 +0.3
521,596 - OH686_02450 0.76 -1.0
521,596 - OH686_02450 0.76 +0.6
521,676 + OH686_02450 0.83 +0.2
521,677 - OH686_02450 0.83 +0.5
521,703 + OH686_02450 0.85 -1.2
521,704 - OH686_02450 0.85 +0.3
521,782 - +0.7
521,872 + -0.8
521,872 + -1.8
521,873 - -0.8
521,873 - -0.7
521,873 - +0.8
521,873 - +1.1
521,873 - -0.2
521,888 - +0.2
521,906 + -0.5
521,906 + +0.0
521,906 + +0.0
521,907 - +1.3
521,907 - +0.8
521,907 - +0.6
521,914 + -0.3
521,914 + +0.2
521,914 + -1.2
521,914 + +0.8
521,915 - +1.5
521,915 - +1.7
521,915 - +1.6
521,915 - +2.5
521,915 - +1.9
521,915 - +1.3
521,976 + -0.0
522,002 - +1.0
522,357 - OH686_02455 0.33 -2.5
522,459 + OH686_02455 0.42 -3.6
522,460 - OH686_02455 0.42 -3.9
522,460 - OH686_02455 0.42 -1.8
522,558 + OH686_02455 0.50 -2.3
522,558 + OH686_02455 0.50 -3.2
522,558 + OH686_02455 0.50 +0.7
522,558 + OH686_02455 0.50 -2.8
522,558 + OH686_02455 0.50 -2.1
522,558 + OH686_02455 0.50 -2.3
522,558 + OH686_02455 0.50 -3.7
522,558 + OH686_02455 0.50 -5.6
522,558 + OH686_02455 0.50 -2.8
522,558 + OH686_02455 0.50 -3.5
522,559 - OH686_02455 0.51 -0.3
522,559 - OH686_02455 0.51 -4.1
522,559 - OH686_02455 0.51 -3.4
522,559 - OH686_02455 0.51 -1.8
522,559 - OH686_02455 0.51 -2.3
522,559 - OH686_02455 0.51 -2.4
522,660 + OH686_02455 0.59 -2.5
522,660 + OH686_02455 0.59 -3.2
522,660 + OH686_02455 0.59 -3.1
522,660 + OH686_02455 0.59 -2.9
522,661 - OH686_02455 0.59 -2.9
522,661 - OH686_02455 0.59 -3.5
522,661 - OH686_02455 0.59 -2.7
522,661 - OH686_02455 0.59 -3.7
522,661 - OH686_02455 0.59 -4.7
522,661 - OH686_02455 0.59 -3.3
522,873 + OH686_02455 0.78 -2.8

Or see this region's nucleotide sequence