Strain Fitness in Pseudomonas sp. S08-1 around OH686_02440

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02435 and OH686_02440 are separated by 196 nucleotidesOH686_02440 and OH686_02445 are separated by 71 nucleotidesOH686_02445 and OH686_02450 are separated by 21 nucleotides OH686_02435: OH686_02435 - glucose-6-phosphate dehydrogenase, at 517,121 to 518,590 _02435 OH686_02440: OH686_02440 - Phosphogluconate repressor HexR, RpiR family, at 518,787 to 519,656 _02440 OH686_02445: OH686_02445 - Aldose 1-epimerase, at 519,728 to 520,624 _02445 OH686_02450: OH686_02450 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 520,646 to 521,887 _02450 Position (kb) 518 519 520Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 517.923 kb on + strand, within OH686_02435at 517.924 kb on - strand, within OH686_02435at 518.064 kb on + strand, within OH686_02435at 518.064 kb on + strand, within OH686_02435at 518.065 kb on - strand, within OH686_02435at 518.065 kb on - strand, within OH686_02435at 518.065 kb on - strand, within OH686_02435at 518.065 kb on - strand, within OH686_02435at 518.079 kb on + strand, within OH686_02435at 518.079 kb on + strand, within OH686_02435at 518.079 kb on + strand, within OH686_02435at 518.079 kb on + strand, within OH686_02435at 518.080 kb on - strand, within OH686_02435at 518.080 kb on - strand, within OH686_02435at 518.080 kb on - strand, within OH686_02435at 518.080 kb on - strand, within OH686_02435at 518.080 kb on - strand, within OH686_02435at 518.223 kb on + strand, within OH686_02435at 518.224 kb on - strand, within OH686_02435at 518.247 kb on + strand, within OH686_02435at 518.248 kb on - strand, within OH686_02435at 518.388 kb on + strand, within OH686_02435at 518.388 kb on + strand, within OH686_02435at 518.388 kb on + strand, within OH686_02435at 518.388 kb on + strand, within OH686_02435at 518.388 kb on + strand, within OH686_02435at 518.388 kb on + strand, within OH686_02435at 518.388 kb on + strand, within OH686_02435at 518.388 kb on + strand, within OH686_02435at 518.389 kb on - strand, within OH686_02435at 518.389 kb on - strand, within OH686_02435at 518.389 kb on - strand, within OH686_02435at 518.389 kb on - strand, within OH686_02435at 518.389 kb on - strand, within OH686_02435at 518.389 kb on - strand, within OH686_02435at 518.389 kb on - strand, within OH686_02435at 518.389 kb on - strand, within OH686_02435at 518.389 kb on - strand, within OH686_02435at 518.389 kb on - strand, within OH686_02435at 518.389 kb on - strand, within OH686_02435at 518.502 kb on + strandat 518.502 kb on + strandat 518.503 kb on - strandat 518.593 kb on + strandat 518.594 kb on - strandat 518.594 kb on - strandat 518.597 kb on + strandat 518.621 kb on - strandat 518.626 kb on + strandat 518.626 kb on + strandat 518.626 kb on + strandat 518.626 kb on + strandat 518.626 kb on + strandat 518.626 kb on + strandat 518.626 kb on + strandat 518.627 kb on - strandat 518.627 kb on - strandat 518.627 kb on - strandat 518.660 kb on + strandat 518.718 kb on - strandat 518.746 kb on + strandat 518.747 kb on - strandat 518.747 kb on - strandat 518.747 kb on - strandat 518.751 kb on + strandat 518.751 kb on + strandat 518.902 kb on - strand, within OH686_02440at 519.036 kb on + strand, within OH686_02440at 519.036 kb on + strand, within OH686_02440at 519.036 kb on + strand, within OH686_02440at 519.037 kb on - strand, within OH686_02440at 519.037 kb on - strand, within OH686_02440at 519.037 kb on - strand, within OH686_02440at 519.078 kb on + strand, within OH686_02440at 519.078 kb on + strand, within OH686_02440at 519.079 kb on - strand, within OH686_02440at 519.079 kb on - strand, within OH686_02440at 519.345 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.498 kb on + strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.499 kb on - strand, within OH686_02440at 519.544 kb on + strand, within OH686_02440at 519.544 kb on + strand, within OH686_02440at 519.544 kb on + strand, within OH686_02440at 519.544 kb on + strand, within OH686_02440at 519.544 kb on + strand, within OH686_02440at 519.545 kb on - strand, within OH686_02440at 519.545 kb on - strand, within OH686_02440at 519.545 kb on - strand, within OH686_02440at 519.545 kb on - strand, within OH686_02440at 519.545 kb on - strand, within OH686_02440at 519.659 kb on + strandat 519.659 kb on + strandat 519.660 kb on - strandat 519.660 kb on - strandat 519.696 kb on + strandat 520.085 kb on + strand, within OH686_02445at 520.085 kb on + strand, within OH686_02445at 520.086 kb on - strand, within OH686_02445at 520.086 kb on - strand, within OH686_02445at 520.086 kb on - strand, within OH686_02445at 520.086 kb on - strand, within OH686_02445at 520.086 kb on - strand, within OH686_02445at 520.104 kb on + strand, within OH686_02445at 520.104 kb on + strand, within OH686_02445at 520.104 kb on + strand, within OH686_02445at 520.104 kb on + strand, within OH686_02445at 520.105 kb on - strand, within OH686_02445at 520.105 kb on - strand, within OH686_02445at 520.105 kb on - strand, within OH686_02445at 520.105 kb on - strand, within OH686_02445

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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517,923 + OH686_02435 0.55 -2.3
517,924 - OH686_02435 0.55 -3.0
518,064 + OH686_02435 0.64 -2.9
518,064 + OH686_02435 0.64 -3.8
518,065 - OH686_02435 0.64 -2.2
518,065 - OH686_02435 0.64 -3.1
518,065 - OH686_02435 0.64 -1.8
518,065 - OH686_02435 0.64 -3.0
518,079 + OH686_02435 0.65 -1.7
518,079 + OH686_02435 0.65 -2.5
518,079 + OH686_02435 0.65 -1.9
518,079 + OH686_02435 0.65 -3.2
518,080 - OH686_02435 0.65 -2.2
518,080 - OH686_02435 0.65 -1.0
518,080 - OH686_02435 0.65 -2.6
518,080 - OH686_02435 0.65 -0.3
518,080 - OH686_02435 0.65 -2.8
518,223 + OH686_02435 0.75 -4.5
518,224 - OH686_02435 0.75 -4.1
518,247 + OH686_02435 0.77 -1.5
518,248 - OH686_02435 0.77 -4.6
518,388 + OH686_02435 0.86 -4.1
518,388 + OH686_02435 0.86 -2.1
518,388 + OH686_02435 0.86 -4.4
518,388 + OH686_02435 0.86 -4.0
518,388 + OH686_02435 0.86 -3.6
518,388 + OH686_02435 0.86 -4.4
518,388 + OH686_02435 0.86 +0.0
518,388 + OH686_02435 0.86 -3.6
518,389 - OH686_02435 0.86 -4.3
518,389 - OH686_02435 0.86 -1.9
518,389 - OH686_02435 0.86 -4.1
518,389 - OH686_02435 0.86 -3.3
518,389 - OH686_02435 0.86 -0.8
518,389 - OH686_02435 0.86 -1.8
518,389 - OH686_02435 0.86 -4.6
518,389 - OH686_02435 0.86 -2.4
518,389 - OH686_02435 0.86 -1.8
518,389 - OH686_02435 0.86 -1.1
518,389 - OH686_02435 0.86 -3.8
518,502 + -3.3
518,502 + -1.9
518,503 - -3.2
518,593 + -1.3
518,594 - -1.2
518,594 - -2.5
518,597 + -3.3
518,621 - +1.0
518,626 + -2.9
518,626 + -2.6
518,626 + +0.0
518,626 + -2.2
518,626 + -3.1
518,626 + -4.2
518,626 + -4.1
518,627 - -1.2
518,627 - -1.1
518,627 - -0.8
518,660 + -3.2
518,718 - +1.0
518,746 + -0.1
518,747 - +1.5
518,747 - +0.9
518,747 - +0.9
518,751 + -0.4
518,751 + +0.2
518,902 - OH686_02440 0.13 +3.4
519,036 + OH686_02440 0.29 +2.8
519,036 + OH686_02440 0.29 +2.7
519,036 + OH686_02440 0.29 +2.8
519,037 - OH686_02440 0.29 +2.8
519,037 - OH686_02440 0.29 +2.6
519,037 - OH686_02440 0.29 +3.2
519,078 + OH686_02440 0.33 +2.9
519,078 + OH686_02440 0.33 +2.9
519,079 - OH686_02440 0.34 +3.0
519,079 - OH686_02440 0.34 +3.0
519,345 + OH686_02440 0.64 +2.5
519,498 + OH686_02440 0.82 +3.3
519,498 + OH686_02440 0.82 +3.8
519,498 + OH686_02440 0.82 +3.5
519,498 + OH686_02440 0.82 +2.9
519,498 + OH686_02440 0.82 +3.0
519,498 + OH686_02440 0.82 +2.9
519,498 + OH686_02440 0.82 +2.7
519,498 + OH686_02440 0.82 +3.1
519,498 + OH686_02440 0.82 +4.7
519,498 + OH686_02440 0.82 +3.2
519,498 + OH686_02440 0.82 +3.2
519,498 + OH686_02440 0.82 +2.4
519,498 + OH686_02440 0.82 +3.0
519,498 + OH686_02440 0.82 +3.0
519,498 + OH686_02440 0.82 +2.9
519,498 + OH686_02440 0.82 +3.1
519,498 + OH686_02440 0.82 +3.1
519,498 + OH686_02440 0.82 +2.7
519,499 - OH686_02440 0.82 +2.8
519,499 - OH686_02440 0.82 +1.7
519,499 - OH686_02440 0.82 +2.5
519,499 - OH686_02440 0.82 +3.7
519,499 - OH686_02440 0.82 +2.7
519,499 - OH686_02440 0.82 +2.5
519,499 - OH686_02440 0.82 +3.1
519,499 - OH686_02440 0.82 +3.3
519,499 - OH686_02440 0.82 +3.6
519,499 - OH686_02440 0.82 +3.1
519,499 - OH686_02440 0.82 +2.7
519,499 - OH686_02440 0.82 +4.0
519,499 - OH686_02440 0.82 +3.3
519,499 - OH686_02440 0.82 +3.2
519,499 - OH686_02440 0.82 +3.4
519,499 - OH686_02440 0.82 +2.6
519,499 - OH686_02440 0.82 +3.0
519,499 - OH686_02440 0.82 +2.8
519,544 + OH686_02440 0.87 +3.4
519,544 + OH686_02440 0.87 +2.8
519,544 + OH686_02440 0.87 +2.8
519,544 + OH686_02440 0.87 +3.1
519,544 + OH686_02440 0.87 +2.7
519,545 - OH686_02440 0.87 +3.8
519,545 - OH686_02440 0.87 +2.6
519,545 - OH686_02440 0.87 +2.5
519,545 - OH686_02440 0.87 +3.7
519,545 - OH686_02440 0.87 +2.9
519,659 + +1.3
519,659 + -0.6
519,660 - +1.1
519,660 - +1.3
519,696 + +1.3
520,085 + OH686_02445 0.40 +0.3
520,085 + OH686_02445 0.40 -1.3
520,086 - OH686_02445 0.40 +1.1
520,086 - OH686_02445 0.40 +1.0
520,086 - OH686_02445 0.40 +1.2
520,086 - OH686_02445 0.40 +2.0
520,086 - OH686_02445 0.40 +1.1
520,104 + OH686_02445 0.42 -0.4
520,104 + OH686_02445 0.42 +1.1
520,104 + OH686_02445 0.42 -0.8
520,104 + OH686_02445 0.42 +1.4
520,105 - OH686_02445 0.42 +1.7
520,105 - OH686_02445 0.42 +2.2
520,105 - OH686_02445 0.42 +1.1
520,105 - OH686_02445 0.42 +1.9

Or see this region's nucleotide sequence