Strain Fitness in Pseudomonas sp. S08-1 around OH686_02105

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02100 and OH686_02105 are separated by 113 nucleotidesOH686_02105 and OH686_02110 are separated by 79 nucleotides OH686_02100: OH686_02100 - aconitate hydratase 1, at 445,793 to 448,534 _02100 OH686_02105: OH686_02105 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 448,648 to 450,090 _02105 OH686_02110: OH686_02110 - Alginate lyase AlgL , at 450,170 to 451,279 _02110 Position (kb) 448 449 450 451Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 447.677 kb on + strand, within OH686_02100at 447.677 kb on + strand, within OH686_02100at 447.677 kb on + strand, within OH686_02100at 447.677 kb on + strand, within OH686_02100at 447.677 kb on + strand, within OH686_02100at 447.677 kb on + strand, within OH686_02100at 447.677 kb on + strand, within OH686_02100at 447.678 kb on - strand, within OH686_02100at 447.678 kb on - strand, within OH686_02100at 447.678 kb on - strand, within OH686_02100at 447.678 kb on - strand, within OH686_02100at 447.678 kb on - strand, within OH686_02100at 447.740 kb on + strand, within OH686_02100at 447.740 kb on + strand, within OH686_02100at 447.740 kb on + strand, within OH686_02100at 447.740 kb on + strand, within OH686_02100at 447.741 kb on - strand, within OH686_02100at 447.741 kb on - strand, within OH686_02100at 447.741 kb on - strand, within OH686_02100at 447.741 kb on - strand, within OH686_02100at 447.764 kb on + strand, within OH686_02100at 447.764 kb on + strand, within OH686_02100at 447.764 kb on + strand, within OH686_02100at 447.764 kb on + strand, within OH686_02100at 447.764 kb on + strand, within OH686_02100at 447.764 kb on + strand, within OH686_02100at 447.764 kb on + strand, within OH686_02100at 447.764 kb on + strand, within OH686_02100at 447.765 kb on - strand, within OH686_02100at 447.765 kb on - strand, within OH686_02100at 447.765 kb on - strand, within OH686_02100at 447.765 kb on - strand, within OH686_02100at 447.765 kb on - strand, within OH686_02100at 447.765 kb on - strand, within OH686_02100at 447.816 kb on + strand, within OH686_02100at 447.816 kb on + strand, within OH686_02100at 447.816 kb on + strand, within OH686_02100at 447.816 kb on + strand, within OH686_02100at 447.816 kb on + strand, within OH686_02100at 447.816 kb on + strand, within OH686_02100at 447.816 kb on + strand, within OH686_02100at 447.817 kb on - strand, within OH686_02100at 447.817 kb on - strand, within OH686_02100at 447.817 kb on - strand, within OH686_02100at 447.817 kb on - strand, within OH686_02100at 447.817 kb on - strand, within OH686_02100at 447.817 kb on - strand, within OH686_02100at 447.923 kb on + strand, within OH686_02100at 447.965 kb on + strand, within OH686_02100at 447.965 kb on + strand, within OH686_02100at 448.100 kb on + strand, within OH686_02100at 448.101 kb on - strand, within OH686_02100at 448.143 kb on + strand, within OH686_02100at 448.143 kb on + strand, within OH686_02100at 448.144 kb on - strand, within OH686_02100at 448.144 kb on - strand, within OH686_02100at 448.144 kb on - strand, within OH686_02100at 448.163 kb on + strand, within OH686_02100at 448.164 kb on - strand, within OH686_02100at 448.164 kb on - strand, within OH686_02100at 448.377 kb on + strandat 448.378 kb on - strandat 448.378 kb on - strandat 448.378 kb on - strandat 448.478 kb on + strandat 448.478 kb on + strandat 448.478 kb on + strandat 448.479 kb on - strandat 448.479 kb on - strandat 448.479 kb on - strandat 448.479 kb on - strandat 448.479 kb on - strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.505 kb on + strandat 448.506 kb on - strandat 448.506 kb on - strandat 448.506 kb on - strandat 448.506 kb on - strandat 448.586 kb on + strandat 448.587 kb on - strandat 448.587 kb on - strandat 448.587 kb on - strandat 448.592 kb on - strandat 448.592 kb on - strandat 448.592 kb on - strandat 448.649 kb on + strandat 448.649 kb on + strandat 448.649 kb on + strandat 448.650 kb on - strandat 448.650 kb on - strandat 448.650 kb on - strandat 448.685 kb on + strandat 448.685 kb on + strandat 448.724 kb on + strandat 448.724 kb on + strandat 448.724 kb on + strandat 448.725 kb on - strandat 448.725 kb on - strandat 448.805 kb on + strand, within OH686_02105at 448.805 kb on + strand, within OH686_02105at 448.805 kb on + strand, within OH686_02105at 448.805 kb on + strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.806 kb on - strand, within OH686_02105at 448.982 kb on + strand, within OH686_02105at 448.982 kb on + strand, within OH686_02105at 448.982 kb on + strand, within OH686_02105at 448.983 kb on - strand, within OH686_02105at 448.983 kb on - strand, within OH686_02105at 448.983 kb on - strand, within OH686_02105at 448.983 kb on - strand, within OH686_02105at 448.983 kb on - strand, within OH686_02105at 449.002 kb on + strand, within OH686_02105at 449.002 kb on + strand, within OH686_02105at 449.002 kb on + strand, within OH686_02105at 449.002 kb on + strand, within OH686_02105at 449.002 kb on + strand, within OH686_02105at 449.002 kb on + strand, within OH686_02105at 449.002 kb on + strand, within OH686_02105at 449.003 kb on - strand, within OH686_02105at 449.003 kb on - strand, within OH686_02105at 449.003 kb on - strand, within OH686_02105at 449.003 kb on - strand, within OH686_02105at 449.003 kb on - strand, within OH686_02105at 449.003 kb on - strand, within OH686_02105at 449.333 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.510 kb on + strand, within OH686_02105at 449.511 kb on - strand, within OH686_02105at 449.511 kb on - strand, within OH686_02105at 449.513 kb on + strand, within OH686_02105at 449.633 kb on + strand, within OH686_02105at 449.633 kb on + strand, within OH686_02105at 449.634 kb on - strand, within OH686_02105at 450.026 kb on + strandat 450.026 kb on + strandat 450.026 kb on + strandat 450.026 kb on + strandat 450.026 kb on + strandat 450.026 kb on + strandat 450.027 kb on - strandat 450.027 kb on - strandat 450.027 kb on - strandat 450.027 kb on - strandat 450.106 kb on + strandat 450.106 kb on + strandat 450.106 kb on + strandat 450.106 kb on + strandat 450.106 kb on + strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.108 kb on + strandat 450.108 kb on + strandat 450.109 kb on - strandat 450.166 kb on - strandat 450.192 kb on - strandat 450.192 kb on - strandat 450.236 kb on + strandat 451.017 kb on + strand, within OH686_02110at 451.017 kb on + strand, within OH686_02110at 451.017 kb on + strand, within OH686_02110at 451.017 kb on + strand, within OH686_02110at 451.071 kb on + strand, within OH686_02110

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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447,677 + OH686_02100 0.69 +0.6
447,677 + OH686_02100 0.69 -0.3
447,677 + OH686_02100 0.69 -0.5
447,677 + OH686_02100 0.69 -0.1
447,677 + OH686_02100 0.69 +1.0
447,677 + OH686_02100 0.69 -0.1
447,677 + OH686_02100 0.69 +0.4
447,678 - OH686_02100 0.69 -0.2
447,678 - OH686_02100 0.69 -0.0
447,678 - OH686_02100 0.69 +0.4
447,678 - OH686_02100 0.69 +0.1
447,678 - OH686_02100 0.69 +1.7
447,740 + OH686_02100 0.71 +0.3
447,740 + OH686_02100 0.71 -0.1
447,740 + OH686_02100 0.71 -0.6
447,740 + OH686_02100 0.71 +0.1
447,741 - OH686_02100 0.71 +0.0
447,741 - OH686_02100 0.71 +0.3
447,741 - OH686_02100 0.71 +0.9
447,741 - OH686_02100 0.71 +0.4
447,764 + OH686_02100 0.72 -0.6
447,764 + OH686_02100 0.72 -0.3
447,764 + OH686_02100 0.72 +0.1
447,764 + OH686_02100 0.72 +0.1
447,764 + OH686_02100 0.72 +1.4
447,764 + OH686_02100 0.72 -1.4
447,764 + OH686_02100 0.72 +0.7
447,764 + OH686_02100 0.72 -0.5
447,765 - OH686_02100 0.72 +0.5
447,765 - OH686_02100 0.72 +0.4
447,765 - OH686_02100 0.72 +0.4
447,765 - OH686_02100 0.72 -0.7
447,765 - OH686_02100 0.72 -0.8
447,765 - OH686_02100 0.72 -0.8
447,816 + OH686_02100 0.74 -1.1
447,816 + OH686_02100 0.74 +0.4
447,816 + OH686_02100 0.74 +1.6
447,816 + OH686_02100 0.74 +0.4
447,816 + OH686_02100 0.74 +0.2
447,816 + OH686_02100 0.74 +0.5
447,816 + OH686_02100 0.74 +0.3
447,817 - OH686_02100 0.74 -0.8
447,817 - OH686_02100 0.74 +1.8
447,817 - OH686_02100 0.74 -0.1
447,817 - OH686_02100 0.74 +0.2
447,817 - OH686_02100 0.74 +0.0
447,817 - OH686_02100 0.74 +0.5
447,923 + OH686_02100 0.78 -0.5
447,965 + OH686_02100 0.79 -0.0
447,965 + OH686_02100 0.79 +0.9
448,100 + OH686_02100 0.84 -0.8
448,101 - OH686_02100 0.84 -0.9
448,143 + OH686_02100 0.86 -2.1
448,143 + OH686_02100 0.86 +0.0
448,144 - OH686_02100 0.86 -0.4
448,144 - OH686_02100 0.86 +0.2
448,144 - OH686_02100 0.86 +0.0
448,163 + OH686_02100 0.86 -0.0
448,164 - OH686_02100 0.86 +1.3
448,164 - OH686_02100 0.86 -1.2
448,377 + +0.1
448,378 - +1.2
448,378 - +0.2
448,378 - +0.3
448,478 + +0.4
448,478 + +2.0
448,478 + +0.4
448,479 - +0.8
448,479 - -3.1
448,479 - +0.1
448,479 - +0.0
448,479 - -0.1
448,505 + +0.1
448,505 + -0.8
448,505 + -0.0
448,505 + +0.0
448,505 + -0.2
448,505 + -0.0
448,505 + +0.8
448,505 + +0.8
448,505 + +1.0
448,505 + -1.1
448,505 + +0.1
448,505 + -0.3
448,505 + +0.2
448,505 + -0.4
448,505 + -1.1
448,506 - +0.2
448,506 - +0.1
448,506 - -0.5
448,506 - +1.0
448,586 + +0.7
448,587 - +0.8
448,587 - +0.1
448,587 - -0.4
448,592 - -0.2
448,592 - +1.0
448,592 - +0.3
448,649 + +0.8
448,649 + +1.3
448,649 + +0.1
448,650 - +0.3
448,650 - +0.8
448,650 - -0.1
448,685 + +0.9
448,685 + -0.9
448,724 + +1.3
448,724 + +0.9
448,724 + +0.9
448,725 - +0.7
448,725 - +1.7
448,805 + OH686_02105 0.11 -0.2
448,805 + OH686_02105 0.11 +0.3
448,805 + OH686_02105 0.11 +1.0
448,805 + OH686_02105 0.11 +1.0
448,806 - OH686_02105 0.11 +0.7
448,806 - OH686_02105 0.11 -0.2
448,806 - OH686_02105 0.11 +1.9
448,806 - OH686_02105 0.11 -1.0
448,806 - OH686_02105 0.11 +0.4
448,806 - OH686_02105 0.11 -0.8
448,806 - OH686_02105 0.11 +0.2
448,806 - OH686_02105 0.11 +0.6
448,806 - OH686_02105 0.11 +0.5
448,806 - OH686_02105 0.11 +0.5
448,806 - OH686_02105 0.11 +0.4
448,806 - OH686_02105 0.11 +0.7
448,982 + OH686_02105 0.23 -0.0
448,982 + OH686_02105 0.23 +0.5
448,982 + OH686_02105 0.23 +0.2
448,983 - OH686_02105 0.23 +0.2
448,983 - OH686_02105 0.23 +0.1
448,983 - OH686_02105 0.23 -0.4
448,983 - OH686_02105 0.23 +0.1
448,983 - OH686_02105 0.23 +0.2
449,002 + OH686_02105 0.25 -0.2
449,002 + OH686_02105 0.25 +0.4
449,002 + OH686_02105 0.25 +0.3
449,002 + OH686_02105 0.25 +1.3
449,002 + OH686_02105 0.25 -0.6
449,002 + OH686_02105 0.25 -0.0
449,002 + OH686_02105 0.25 -0.1
449,003 - OH686_02105 0.25 +0.5
449,003 - OH686_02105 0.25 +1.0
449,003 - OH686_02105 0.25 +1.6
449,003 - OH686_02105 0.25 +1.0
449,003 - OH686_02105 0.25 +1.2
449,003 - OH686_02105 0.25 +1.6
449,333 + OH686_02105 0.47 +0.2
449,435 + OH686_02105 0.55 -0.2
449,435 + OH686_02105 0.55 +0.5
449,435 + OH686_02105 0.55 +0.1
449,435 + OH686_02105 0.55 +0.4
449,435 + OH686_02105 0.55 +1.0
449,435 + OH686_02105 0.55 +1.0
449,435 + OH686_02105 0.55 -1.3
449,435 + OH686_02105 0.55 -1.0
449,435 + OH686_02105 0.55 -0.0
449,435 + OH686_02105 0.55 +0.8
449,435 + OH686_02105 0.55 +0.8
449,435 + OH686_02105 0.55 +0.1
449,436 - OH686_02105 0.55 +1.4
449,436 - OH686_02105 0.55 +0.2
449,436 - OH686_02105 0.55 -1.3
449,436 - OH686_02105 0.55 +0.0
449,436 - OH686_02105 0.55 +1.3
449,436 - OH686_02105 0.55 -0.4
449,436 - OH686_02105 0.55 +0.2
449,436 - OH686_02105 0.55 +0.4
449,510 + OH686_02105 0.60 +0.5
449,511 - OH686_02105 0.60 +0.8
449,511 - OH686_02105 0.60 +0.5
449,513 + OH686_02105 0.60 -1.4
449,633 + OH686_02105 0.68 +0.6
449,633 + OH686_02105 0.68 -0.6
449,634 - OH686_02105 0.68 +0.0
450,026 + +0.5
450,026 + +1.7
450,026 + +0.4
450,026 + +0.8
450,026 + +0.0
450,026 + +1.0
450,027 - -0.5
450,027 - +0.3
450,027 - -1.0
450,027 - -0.0
450,106 + +0.2
450,106 + -0.6
450,106 + -0.6
450,106 + +0.0
450,106 + +0.0
450,107 - -1.8
450,107 - -0.2
450,107 - -1.3
450,107 - -1.3
450,107 - -1.6
450,107 - -0.7
450,107 - -1.2
450,107 - -1.0
450,107 - -1.0
450,107 - -0.7
450,107 - -1.7
450,107 - -0.6
450,108 + +0.0
450,108 + +0.1
450,109 - +0.9
450,166 - +0.4
450,192 - -2.0
450,192 - -0.8
450,236 + -1.1
451,017 + OH686_02110 0.76 -0.3
451,017 + OH686_02110 0.76 -1.3
451,017 + OH686_02110 0.76 -0.9
451,017 + OH686_02110 0.76 -0.8
451,071 + OH686_02110 0.81 +1.0

Or see this region's nucleotide sequence