Strain Fitness in Pseudomonas sp. S08-1 around OH686_01000

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00995 and OH686_01000 are separated by 118 nucleotidesOH686_01000 and OH686_01005 overlap by 4 nucleotides OH686_00995: OH686_00995 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 202,864 to 206,448 _00995 OH686_01000: OH686_01000 - Multidrug efflux system, outer membrane factor lipoprotein, at 206,567 to 207,955 _01000 OH686_01005: OH686_01005 - Multidrug efflux system, inner membrane proton/drug antiporter (RND type), at 207,952 to 211,134 _01005 Position (kb) 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 205.732 kb on + strand, within OH686_00995at 205.732 kb on + strand, within OH686_00995at 205.733 kb on - strand, within OH686_00995at 205.733 kb on - strand, within OH686_00995at 205.936 kb on + strand, within OH686_00995at 205.936 kb on + strand, within OH686_00995at 205.937 kb on - strand, within OH686_00995at 205.942 kb on + strand, within OH686_00995at 205.942 kb on + strand, within OH686_00995at 205.942 kb on + strand, within OH686_00995at 205.943 kb on - strand, within OH686_00995at 205.943 kb on - strand, within OH686_00995at 206.017 kb on - strand, within OH686_00995at 206.039 kb on - strand, within OH686_00995at 206.091 kb on - strandat 206.107 kb on + strandat 206.107 kb on + strandat 206.107 kb on + strandat 206.107 kb on + strandat 206.107 kb on + strandat 206.107 kb on + strandat 206.108 kb on - strandat 206.108 kb on - strandat 206.108 kb on - strandat 206.108 kb on - strandat 206.108 kb on - strandat 206.108 kb on - strandat 206.108 kb on - strandat 206.108 kb on - strandat 206.108 kb on - strandat 206.108 kb on - strandat 206.202 kb on + strandat 206.203 kb on - strandat 206.242 kb on + strandat 206.242 kb on + strandat 206.243 kb on - strandat 206.243 kb on - strandat 206.243 kb on - strandat 206.323 kb on + strandat 206.323 kb on + strandat 206.323 kb on + strandat 206.324 kb on - strandat 206.324 kb on - strandat 206.451 kb on + strandat 206.452 kb on - strandat 206.452 kb on - strandat 206.604 kb on + strandat 206.604 kb on + strandat 206.604 kb on + strandat 206.604 kb on + strandat 206.604 kb on + strandat 206.604 kb on + strandat 206.604 kb on + strandat 206.604 kb on + strandat 206.604 kb on + strandat 206.605 kb on - strandat 206.605 kb on - strandat 206.605 kb on - strandat 206.605 kb on - strandat 206.605 kb on - strandat 206.626 kb on - strandat 206.860 kb on - strand, within OH686_01000at 206.860 kb on - strand, within OH686_01000at 206.921 kb on + strand, within OH686_01000at 206.921 kb on + strand, within OH686_01000at 206.921 kb on + strand, within OH686_01000at 206.921 kb on + strand, within OH686_01000at 206.921 kb on + strand, within OH686_01000at 206.922 kb on - strand, within OH686_01000at 207.107 kb on + strand, within OH686_01000at 207.107 kb on + strand, within OH686_01000at 207.107 kb on + strand, within OH686_01000at 207.107 kb on + strand, within OH686_01000at 207.108 kb on - strand, within OH686_01000at 207.108 kb on - strand, within OH686_01000at 207.108 kb on - strand, within OH686_01000at 207.108 kb on - strand, within OH686_01000at 207.483 kb on + strand, within OH686_01000at 207.483 kb on + strand, within OH686_01000at 207.483 kb on + strand, within OH686_01000at 207.484 kb on - strand, within OH686_01000at 207.484 kb on - strand, within OH686_01000at 207.588 kb on + strand, within OH686_01000at 207.770 kb on + strand, within OH686_01000at 207.892 kb on - strandat 208.028 kb on + strandat 208.028 kb on + strandat 208.028 kb on + strandat 208.028 kb on + strandat 208.029 kb on - strandat 208.029 kb on - strandat 208.354 kb on + strand, within OH686_01005at 208.354 kb on + strand, within OH686_01005at 208.355 kb on - strand, within OH686_01005at 208.355 kb on - strand, within OH686_01005at 208.511 kb on + strand, within OH686_01005at 208.511 kb on + strand, within OH686_01005at 208.511 kb on + strand, within OH686_01005at 208.511 kb on + strand, within OH686_01005at 208.512 kb on - strand, within OH686_01005at 208.512 kb on - strand, within OH686_01005at 208.532 kb on + strand, within OH686_01005at 208.532 kb on + strand, within OH686_01005at 208.532 kb on + strand, within OH686_01005at 208.533 kb on - strand, within OH686_01005at 208.533 kb on - strand, within OH686_01005at 208.533 kb on - strand, within OH686_01005at 208.649 kb on + strand, within OH686_01005at 208.649 kb on + strand, within OH686_01005at 208.649 kb on + strand, within OH686_01005at 208.650 kb on - strand, within OH686_01005at 208.650 kb on - strand, within OH686_01005at 208.650 kb on - strand, within OH686_01005at 208.650 kb on - strand, within OH686_01005at 208.702 kb on + strand, within OH686_01005at 208.732 kb on + strand, within OH686_01005at 208.799 kb on + strand, within OH686_01005at 208.799 kb on + strand, within OH686_01005at 208.800 kb on - strand, within OH686_01005at 208.804 kb on - strand, within OH686_01005at 208.804 kb on - strand, within OH686_01005at 208.804 kb on - strand, within OH686_01005at 208.804 kb on - strand, within OH686_01005at 208.832 kb on + strand, within OH686_01005at 208.832 kb on + strand, within OH686_01005at 208.832 kb on + strand, within OH686_01005at 208.833 kb on - strand, within OH686_01005at 208.833 kb on - strand, within OH686_01005at 208.833 kb on - strand, within OH686_01005at 208.833 kb on - strand, within OH686_01005at 208.833 kb on - strand, within OH686_01005at 208.833 kb on - strand, within OH686_01005at 208.833 kb on - strand, within OH686_01005at 208.847 kb on + strand, within OH686_01005at 208.847 kb on + strand, within OH686_01005at 208.847 kb on + strand, within OH686_01005at 208.847 kb on + strand, within OH686_01005at 208.848 kb on - strand, within OH686_01005at 208.848 kb on - strand, within OH686_01005

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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205,732 + OH686_00995 0.80 +0.2
205,732 + OH686_00995 0.80 +1.1
205,733 - OH686_00995 0.80 -1.3
205,733 - OH686_00995 0.80 +0.4
205,936 + OH686_00995 0.86 -1.1
205,936 + OH686_00995 0.86 -1.3
205,937 - OH686_00995 0.86 -0.3
205,942 + OH686_00995 0.86 +0.1
205,942 + OH686_00995 0.86 -0.0
205,942 + OH686_00995 0.86 -0.3
205,943 - OH686_00995 0.86 +0.2
205,943 - OH686_00995 0.86 -2.1
206,017 - OH686_00995 0.88 -0.6
206,039 - OH686_00995 0.89 -1.1
206,091 - +0.3
206,107 + +0.8
206,107 + -0.8
206,107 + +1.0
206,107 + -0.8
206,107 + +0.2
206,107 + +0.1
206,108 - -0.8
206,108 - +1.1
206,108 - -0.0
206,108 - +1.6
206,108 - +0.0
206,108 - -1.3
206,108 - +0.3
206,108 - -0.7
206,108 - -0.8
206,108 - +0.0
206,202 + +0.3
206,203 - -0.1
206,242 + +0.3
206,242 + +0.5
206,243 - -0.6
206,243 - +0.3
206,243 - -0.7
206,323 + -0.1
206,323 + -0.7
206,323 + -1.7
206,324 - -0.4
206,324 - -1.1
206,451 + -0.1
206,452 - +0.8
206,452 - +0.6
206,604 + -0.3
206,604 + -0.2
206,604 + +0.0
206,604 + +1.8
206,604 + +1.0
206,604 + +0.1
206,604 + +0.0
206,604 + +0.6
206,604 + -1.0
206,605 - -0.5
206,605 - +0.8
206,605 - +0.5
206,605 - -0.6
206,605 - +1.0
206,626 - +0.5
206,860 - OH686_01000 0.21 +1.5
206,860 - OH686_01000 0.21 +0.8
206,921 + OH686_01000 0.25 +2.0
206,921 + OH686_01000 0.25 -0.1
206,921 + OH686_01000 0.25 +0.2
206,921 + OH686_01000 0.25 +0.4
206,921 + OH686_01000 0.25 -0.2
206,922 - OH686_01000 0.26 +1.6
207,107 + OH686_01000 0.39 -1.1
207,107 + OH686_01000 0.39 +0.0
207,107 + OH686_01000 0.39 +0.8
207,107 + OH686_01000 0.39 +0.8
207,108 - OH686_01000 0.39 +1.6
207,108 - OH686_01000 0.39 -0.5
207,108 - OH686_01000 0.39 +0.2
207,108 - OH686_01000 0.39 +1.7
207,483 + OH686_01000 0.66 -0.7
207,483 + OH686_01000 0.66 +0.8
207,483 + OH686_01000 0.66 -0.4
207,484 - OH686_01000 0.66 -0.2
207,484 - OH686_01000 0.66 -0.2
207,588 + OH686_01000 0.74 -0.5
207,770 + OH686_01000 0.87 +0.9
207,892 - +1.0
208,028 + -0.8
208,028 + +0.7
208,028 + +0.0
208,028 + +0.5
208,029 - +0.6
208,029 - +0.7
208,354 + OH686_01005 0.13 -1.0
208,354 + OH686_01005 0.13 -0.6
208,355 - OH686_01005 0.13 +0.4
208,355 - OH686_01005 0.13 +1.3
208,511 + OH686_01005 0.18 +0.3
208,511 + OH686_01005 0.18 +0.0
208,511 + OH686_01005 0.18 +0.6
208,511 + OH686_01005 0.18 -2.2
208,512 - OH686_01005 0.18 +0.0
208,512 - OH686_01005 0.18 +0.9
208,532 + OH686_01005 0.18 +0.5
208,532 + OH686_01005 0.18 +0.5
208,532 + OH686_01005 0.18 -0.6
208,533 - OH686_01005 0.18 +0.7
208,533 - OH686_01005 0.18 +0.3
208,533 - OH686_01005 0.18 -0.4
208,649 + OH686_01005 0.22 +0.2
208,649 + OH686_01005 0.22 +1.0
208,649 + OH686_01005 0.22 -0.4
208,650 - OH686_01005 0.22 +0.5
208,650 - OH686_01005 0.22 +0.7
208,650 - OH686_01005 0.22 -0.5
208,650 - OH686_01005 0.22 +0.5
208,702 + OH686_01005 0.24 +0.4
208,732 + OH686_01005 0.25 -0.4
208,799 + OH686_01005 0.27 +0.2
208,799 + OH686_01005 0.27 -1.1
208,800 - OH686_01005 0.27 -0.9
208,804 - OH686_01005 0.27 +0.1
208,804 - OH686_01005 0.27 +0.6
208,804 - OH686_01005 0.27 -0.3
208,804 - OH686_01005 0.27 -0.7
208,832 + OH686_01005 0.28 +0.7
208,832 + OH686_01005 0.28 -0.0
208,832 + OH686_01005 0.28 -0.7
208,833 - OH686_01005 0.28 -0.1
208,833 - OH686_01005 0.28 +0.5
208,833 - OH686_01005 0.28 +0.2
208,833 - OH686_01005 0.28 +0.8
208,833 - OH686_01005 0.28 +0.4
208,833 - OH686_01005 0.28 +0.2
208,833 - OH686_01005 0.28 -0.0
208,847 + OH686_01005 0.28 +1.0
208,847 + OH686_01005 0.28 -0.1
208,847 + OH686_01005 0.28 -0.7
208,847 + OH686_01005 0.28 -0.6
208,848 - OH686_01005 0.28 +0.1
208,848 - OH686_01005 0.28 -0.8

Or see this region's nucleotide sequence