Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4680

Experiment: m.b. perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4679 and Echvi_4680 are separated by 234 nucleotidesEchvi_4680 and Echvi_4681 are separated by 99 nucleotides Echvi_4679: Echvi_4679 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 5,600,976 to 5,601,989 _4679 Echvi_4680: Echvi_4680 - Transcriptional regulators, at 5,602,224 to 5,602,655 _4680 Echvi_4681: Echvi_4681 - Thioredoxin reductase, at 5,602,755 to 5,603,759 _4681 Position (kb) 5602 5603Strain fitness (log2 ratio) -2 -1 0 1at 5601.289 kb on + strand, within Echvi_4679at 5601.290 kb on - strand, within Echvi_4679at 5601.292 kb on + strand, within Echvi_4679at 5601.315 kb on - strand, within Echvi_4679at 5601.580 kb on + strand, within Echvi_4679at 5601.580 kb on + strand, within Echvi_4679at 5601.707 kb on + strand, within Echvi_4679at 5601.777 kb on - strand, within Echvi_4679at 5601.863 kb on + strand, within Echvi_4679at 5601.899 kb on + strandat 5601.914 kb on + strandat 5601.933 kb on - strandat 5601.995 kb on + strandat 5601.995 kb on + strandat 5601.995 kb on + strandat 5601.995 kb on + strandat 5601.996 kb on - strandat 5601.996 kb on - strandat 5601.996 kb on - strandat 5602.030 kb on + strandat 5602.031 kb on - strandat 5602.031 kb on - strandat 5602.034 kb on - strandat 5602.120 kb on - strandat 5602.282 kb on + strand, within Echvi_4680at 5602.290 kb on + strand, within Echvi_4680at 5602.290 kb on + strand, within Echvi_4680at 5602.312 kb on + strand, within Echvi_4680at 5602.312 kb on + strand, within Echvi_4680at 5602.421 kb on + strand, within Echvi_4680at 5602.444 kb on + strand, within Echvi_4680at 5602.444 kb on + strand, within Echvi_4680at 5602.444 kb on + strand, within Echvi_4680at 5602.444 kb on + strand, within Echvi_4680at 5602.444 kb on + strand, within Echvi_4680at 5602.444 kb on + strand, within Echvi_4680at 5602.444 kb on + strand, within Echvi_4680at 5602.444 kb on + strand, within Echvi_4680at 5602.461 kb on + strand, within Echvi_4680at 5602.654 kb on - strandat 5602.694 kb on + strandat 5602.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 25 mM
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5,601,289 + Echvi_4679 0.31 +0.5
5,601,290 - Echvi_4679 0.31 +0.6
5,601,292 + Echvi_4679 0.31 -2.2
5,601,315 - Echvi_4679 0.33 -0.6
5,601,580 + Echvi_4679 0.60 -0.6
5,601,580 + Echvi_4679 0.60 +0.1
5,601,707 + Echvi_4679 0.72 +0.1
5,601,777 - Echvi_4679 0.79 +0.9
5,601,863 + Echvi_4679 0.87 +0.3
5,601,899 + -0.5
5,601,914 + +1.2
5,601,933 - +0.9
5,601,995 + -0.1
5,601,995 + -0.1
5,601,995 + -0.0
5,601,995 + +0.5
5,601,996 - -2.3
5,601,996 - -0.6
5,601,996 - -0.5
5,602,030 + -0.6
5,602,031 - -0.4
5,602,031 - +0.1
5,602,034 - -0.4
5,602,120 - +0.2
5,602,282 + Echvi_4680 0.13 -0.2
5,602,290 + Echvi_4680 0.15 -0.3
5,602,290 + Echvi_4680 0.15 -0.8
5,602,312 + Echvi_4680 0.20 -1.6
5,602,312 + Echvi_4680 0.20 +1.0
5,602,421 + Echvi_4680 0.46 -1.0
5,602,444 + Echvi_4680 0.51 -1.1
5,602,444 + Echvi_4680 0.51 -1.1
5,602,444 + Echvi_4680 0.51 -1.4
5,602,444 + Echvi_4680 0.51 +0.6
5,602,444 + Echvi_4680 0.51 -1.3
5,602,444 + Echvi_4680 0.51 -0.6
5,602,444 + Echvi_4680 0.51 +0.2
5,602,444 + Echvi_4680 0.51 -0.2
5,602,461 + Echvi_4680 0.55 +0.2
5,602,654 - +0.5
5,602,694 + -0.6
5,602,745 + +0.3

Or see this region's nucleotide sequence