Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4194

Experiment: m.b. perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4192 and Echvi_4193 are separated by 71 nucleotidesEchvi_4193 and Echvi_4194 are separated by 22 nucleotidesEchvi_4194 and Echvi_4195 are separated by 154 nucleotides Echvi_4192: Echvi_4192 - Transposase and inactivated derivatives, at 5,006,452 to 5,007,972 _4192 Echvi_4193: Echvi_4193 - Transposase and inactivated derivatives, at 5,008,044 to 5,008,337 _4193 Echvi_4194: Echvi_4194 - IS66 Orf2 like protein., at 5,008,360 to 5,008,650 _4194 Echvi_4195: Echvi_4195 - Transposase and inactivated derivatives, at 5,008,805 to 5,010,367 _4195 Position (kb) 5008 5009Strain fitness (log2 ratio) -2 -1 0 1 2at 5007.371 kb on + strand, within Echvi_4192at 5007.371 kb on + strand, within Echvi_4192at 5007.371 kb on + strand, within Echvi_4192at 5007.372 kb on - strand, within Echvi_4192at 5007.372 kb on - strand, within Echvi_4192at 5007.372 kb on - strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.375 kb on + strand, within Echvi_4192at 5007.376 kb on - strand, within Echvi_4192at 5007.376 kb on - strand, within Echvi_4192at 5007.376 kb on - strand, within Echvi_4192at 5007.376 kb on - strand, within Echvi_4192at 5007.376 kb on - strand, within Echvi_4192at 5007.376 kb on - strand, within Echvi_4192at 5007.376 kb on - strand, within Echvi_4192at 5007.380 kb on - strand, within Echvi_4192at 5007.404 kb on + strand, within Echvi_4192at 5007.404 kb on + strand, within Echvi_4192at 5007.405 kb on - strand, within Echvi_4192at 5007.405 kb on - strand, within Echvi_4192at 5007.410 kb on + strand, within Echvi_4192at 5007.410 kb on + strand, within Echvi_4192at 5007.410 kb on + strand, within Echvi_4192at 5007.410 kb on + strand, within Echvi_4192at 5007.410 kb on + strand, within Echvi_4192at 5007.411 kb on - strand, within Echvi_4192at 5007.411 kb on - strand, within Echvi_4192at 5007.411 kb on - strand, within Echvi_4192at 5007.496 kb on - strand, within Echvi_4192at 5007.518 kb on + strand, within Echvi_4192at 5007.518 kb on + strand, within Echvi_4192at 5007.518 kb on + strand, within Echvi_4192at 5007.518 kb on + strand, within Echvi_4192at 5007.519 kb on - strand, within Echvi_4192at 5007.519 kb on - strand, within Echvi_4192at 5007.534 kb on - strand, within Echvi_4192at 5007.534 kb on - strand, within Echvi_4192at 5007.545 kb on + strand, within Echvi_4192at 5007.546 kb on - strand, within Echvi_4192at 5007.546 kb on - strand, within Echvi_4192at 5007.581 kb on - strand, within Echvi_4192at 5007.670 kb on - strand, within Echvi_4192at 5007.670 kb on - strand, within Echvi_4192at 5007.975 kb on - strandat 5007.975 kb on - strandat 5007.975 kb on - strandat 5008.009 kb on + strandat 5008.078 kb on + strand, within Echvi_4193at 5008.192 kb on + strand, within Echvi_4193at 5008.192 kb on + strand, within Echvi_4193at 5008.193 kb on - strand, within Echvi_4193at 5008.193 kb on - strand, within Echvi_4193at 5008.193 kb on - strand, within Echvi_4193at 5008.193 kb on - strand, within Echvi_4193at 5008.340 kb on - strandat 5008.340 kb on - strandat 5008.340 kb on - strandat 5008.340 kb on - strandat 5008.357 kb on + strandat 5008.357 kb on + strandat 5008.358 kb on - strandat 5008.504 kb on + strand, within Echvi_4194at 5008.505 kb on - strand, within Echvi_4194at 5008.508 kb on - strand, within Echvi_4194at 5008.508 kb on - strand, within Echvi_4194at 5008.509 kb on + strand, within Echvi_4194at 5008.510 kb on - strand, within Echvi_4194at 5008.510 kb on - strand, within Echvi_4194at 5008.740 kb on + strandat 5008.812 kb on - strandat 5009.203 kb on - strand, within Echvi_4195at 5009.203 kb on - strand, within Echvi_4195at 5009.203 kb on - strand, within Echvi_4195at 5009.231 kb on + strand, within Echvi_4195at 5009.231 kb on + strand, within Echvi_4195at 5009.231 kb on + strand, within Echvi_4195at 5009.232 kb on - strand, within Echvi_4195at 5009.232 kb on - strand, within Echvi_4195at 5009.232 kb on - strand, within Echvi_4195at 5009.261 kb on + strand, within Echvi_4195at 5009.261 kb on + strand, within Echvi_4195at 5009.261 kb on + strand, within Echvi_4195at 5009.262 kb on - strand, within Echvi_4195at 5009.265 kb on + strand, within Echvi_4195at 5009.265 kb on + strand, within Echvi_4195at 5009.265 kb on + strand, within Echvi_4195at 5009.265 kb on + strand, within Echvi_4195at 5009.266 kb on - strand, within Echvi_4195at 5009.270 kb on + strand, within Echvi_4195at 5009.271 kb on - strand, within Echvi_4195at 5009.316 kb on + strand, within Echvi_4195at 5009.316 kb on + strand, within Echvi_4195at 5009.393 kb on + strand, within Echvi_4195at 5009.393 kb on + strand, within Echvi_4195at 5009.394 kb on - strand, within Echvi_4195at 5009.513 kb on + strand, within Echvi_4195at 5009.575 kb on - strand, within Echvi_4195at 5009.618 kb on + strand, within Echvi_4195

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 25 mM
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5,007,371 + Echvi_4192 0.60 -0.4
5,007,371 + Echvi_4192 0.60 +0.4
5,007,371 + Echvi_4192 0.60 -0.8
5,007,372 - Echvi_4192 0.60 -0.8
5,007,372 - Echvi_4192 0.60 +0.2
5,007,372 - Echvi_4192 0.60 -0.4
5,007,375 + Echvi_4192 0.61 +0.4
5,007,375 + Echvi_4192 0.61 +0.8
5,007,375 + Echvi_4192 0.61 +0.2
5,007,375 + Echvi_4192 0.61 -0.7
5,007,375 + Echvi_4192 0.61 +0.1
5,007,375 + Echvi_4192 0.61 +0.4
5,007,375 + Echvi_4192 0.61 -0.1
5,007,375 + Echvi_4192 0.61 -1.0
5,007,375 + Echvi_4192 0.61 +0.2
5,007,375 + Echvi_4192 0.61 -0.4
5,007,375 + Echvi_4192 0.61 +0.0
5,007,375 + Echvi_4192 0.61 +1.8
5,007,375 + Echvi_4192 0.61 -1.3
5,007,375 + Echvi_4192 0.61 -1.1
5,007,375 + Echvi_4192 0.61 -1.1
5,007,376 - Echvi_4192 0.61 +0.7
5,007,376 - Echvi_4192 0.61 -0.0
5,007,376 - Echvi_4192 0.61 -0.3
5,007,376 - Echvi_4192 0.61 +1.0
5,007,376 - Echvi_4192 0.61 -0.2
5,007,376 - Echvi_4192 0.61 +0.5
5,007,376 - Echvi_4192 0.61 -1.9
5,007,380 - Echvi_4192 0.61 +0.7
5,007,404 + Echvi_4192 0.63 -1.0
5,007,404 + Echvi_4192 0.63 -0.1
5,007,405 - Echvi_4192 0.63 +0.8
5,007,405 - Echvi_4192 0.63 -1.1
5,007,410 + Echvi_4192 0.63 +0.5
5,007,410 + Echvi_4192 0.63 +0.0
5,007,410 + Echvi_4192 0.63 -1.0
5,007,410 + Echvi_4192 0.63 -0.1
5,007,410 + Echvi_4192 0.63 +0.2
5,007,411 - Echvi_4192 0.63 +0.2
5,007,411 - Echvi_4192 0.63 -0.2
5,007,411 - Echvi_4192 0.63 +0.3
5,007,496 - Echvi_4192 0.69 -1.7
5,007,518 + Echvi_4192 0.70 +0.3
5,007,518 + Echvi_4192 0.70 +0.5
5,007,518 + Echvi_4192 0.70 -0.2
5,007,518 + Echvi_4192 0.70 +0.6
5,007,519 - Echvi_4192 0.70 -0.4
5,007,519 - Echvi_4192 0.70 -0.9
5,007,534 - Echvi_4192 0.71 -0.6
5,007,534 - Echvi_4192 0.71 +0.2
5,007,545 + Echvi_4192 0.72 -0.5
5,007,546 - Echvi_4192 0.72 -1.1
5,007,546 - Echvi_4192 0.72 -1.3
5,007,581 - Echvi_4192 0.74 -0.4
5,007,670 - Echvi_4192 0.80 +0.6
5,007,670 - Echvi_4192 0.80 +0.8
5,007,975 - +0.7
5,007,975 - -0.1
5,007,975 - -1.4
5,008,009 + -0.9
5,008,078 + Echvi_4193 0.12 +0.5
5,008,192 + Echvi_4193 0.50 -0.7
5,008,192 + Echvi_4193 0.50 +0.4
5,008,193 - Echvi_4193 0.51 +0.2
5,008,193 - Echvi_4193 0.51 -0.1
5,008,193 - Echvi_4193 0.51 +0.3
5,008,193 - Echvi_4193 0.51 -0.4
5,008,340 - +0.5
5,008,340 - -0.6
5,008,340 - -0.4
5,008,340 - -2.7
5,008,357 + +0.8
5,008,357 + -0.9
5,008,358 - -0.1
5,008,504 + Echvi_4194 0.49 -0.8
5,008,505 - Echvi_4194 0.50 +0.4
5,008,508 - Echvi_4194 0.51 -0.5
5,008,508 - Echvi_4194 0.51 -0.7
5,008,509 + Echvi_4194 0.51 -0.6
5,008,510 - Echvi_4194 0.52 -0.7
5,008,510 - Echvi_4194 0.52 -1.5
5,008,740 + -0.6
5,008,812 - -0.6
5,009,203 - Echvi_4195 0.25 -0.8
5,009,203 - Echvi_4195 0.25 +0.5
5,009,203 - Echvi_4195 0.25 -0.2
5,009,231 + Echvi_4195 0.27 +0.4
5,009,231 + Echvi_4195 0.27 -0.2
5,009,231 + Echvi_4195 0.27 -0.0
5,009,232 - Echvi_4195 0.27 +1.4
5,009,232 - Echvi_4195 0.27 -1.2
5,009,232 - Echvi_4195 0.27 +0.5
5,009,261 + Echvi_4195 0.29 +0.2
5,009,261 + Echvi_4195 0.29 -0.3
5,009,261 + Echvi_4195 0.29 +0.0
5,009,262 - Echvi_4195 0.29 -1.4
5,009,265 + Echvi_4195 0.29 -1.1
5,009,265 + Echvi_4195 0.29 +0.9
5,009,265 + Echvi_4195 0.29 -0.4
5,009,265 + Echvi_4195 0.29 -2.0
5,009,266 - Echvi_4195 0.29 +0.6
5,009,270 + Echvi_4195 0.30 -0.3
5,009,271 - Echvi_4195 0.30 -0.6
5,009,316 + Echvi_4195 0.33 -0.7
5,009,316 + Echvi_4195 0.33 -1.1
5,009,393 + Echvi_4195 0.38 +0.7
5,009,393 + Echvi_4195 0.38 +0.2
5,009,394 - Echvi_4195 0.38 +0.5
5,009,513 + Echvi_4195 0.45 -0.6
5,009,575 - Echvi_4195 0.49 -0.1
5,009,618 + Echvi_4195 0.52 +0.5

Or see this region's nucleotide sequence