Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2623

Experiment: m.b. perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2622 and Echvi_2623 overlap by 4 nucleotidesEchvi_2623 and Echvi_2624 are separated by 233 nucleotidesEchvi_2624 and Echvi_2625 are separated by 11 nucleotides Echvi_2622: Echvi_2622 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 3,109,862 to 3,110,557 _2622 Echvi_2623: Echvi_2623 - Signal transduction histidine kinase, at 3,110,554 to 3,112,011 _2623 Echvi_2624: Echvi_2624 - hypothetical protein, at 3,112,245 to 3,112,748 _2624 Echvi_2625: Echvi_2625 - hypothetical protein, at 3,112,760 to 3,113,227 _2625 Position (kb) 3110 3111 3112 3113Strain fitness (log2 ratio) -2 -1 0 1 2at 3109.569 kb on + strandat 3109.606 kb on + strandat 3109.606 kb on + strandat 3109.610 kb on + strandat 3109.611 kb on - strandat 3109.611 kb on - strandat 3109.611 kb on - strandat 3109.611 kb on - strandat 3109.611 kb on - strandat 3109.617 kb on - strandat 3109.617 kb on - strandat 3109.617 kb on - strandat 3109.662 kb on + strandat 3109.690 kb on + strandat 3109.691 kb on - strandat 3109.691 kb on - strandat 3109.691 kb on - strandat 3109.691 kb on - strandat 3109.692 kb on + strandat 3109.753 kb on - strandat 3109.753 kb on - strandat 3109.756 kb on - strandat 3109.759 kb on - strandat 3109.763 kb on + strandat 3109.763 kb on + strandat 3109.764 kb on - strandat 3109.764 kb on - strandat 3109.769 kb on - strandat 3109.839 kb on + strandat 3109.839 kb on + strandat 3109.839 kb on + strandat 3109.841 kb on + strandat 3109.843 kb on + strandat 3109.872 kb on + strandat 3109.997 kb on + strand, within Echvi_2622at 3109.997 kb on + strand, within Echvi_2622at 3110.017 kb on + strand, within Echvi_2622at 3110.053 kb on + strand, within Echvi_2622at 3110.054 kb on - strand, within Echvi_2622at 3110.074 kb on + strand, within Echvi_2622at 3110.074 kb on + strand, within Echvi_2622at 3110.074 kb on + strand, within Echvi_2622at 3110.074 kb on + strand, within Echvi_2622at 3110.074 kb on + strand, within Echvi_2622at 3110.074 kb on + strand, within Echvi_2622at 3110.075 kb on - strand, within Echvi_2622at 3110.075 kb on - strand, within Echvi_2622at 3110.075 kb on - strand, within Echvi_2622at 3110.075 kb on - strand, within Echvi_2622at 3110.075 kb on - strand, within Echvi_2622at 3110.075 kb on - strand, within Echvi_2622at 3110.075 kb on - strandat 3110.083 kb on - strand, within Echvi_2622at 3110.173 kb on + strand, within Echvi_2622at 3110.225 kb on + strand, within Echvi_2622at 3110.225 kb on + strand, within Echvi_2622at 3110.225 kb on + strand, within Echvi_2622at 3110.226 kb on - strand, within Echvi_2622at 3110.226 kb on - strand, within Echvi_2622at 3110.226 kb on - strand, within Echvi_2622at 3110.226 kb on - strand, within Echvi_2622at 3110.258 kb on - strand, within Echvi_2622at 3110.258 kb on - strand, within Echvi_2622at 3110.258 kb on - strand, within Echvi_2622at 3110.258 kb on - strand, within Echvi_2622at 3110.262 kb on - strand, within Echvi_2622at 3110.459 kb on + strand, within Echvi_2622at 3110.459 kb on + strand, within Echvi_2622at 3110.460 kb on - strand, within Echvi_2622at 3110.464 kb on - strand, within Echvi_2622at 3110.464 kb on - strandat 3110.493 kb on - strandat 3110.541 kb on + strandat 3110.578 kb on + strandat 3110.578 kb on + strandat 3110.606 kb on - strandat 3110.608 kb on - strandat 3110.608 kb on - strandat 3110.628 kb on + strandat 3110.629 kb on - strandat 3110.633 kb on - strandat 3110.694 kb on + strandat 3110.694 kb on + strandat 3110.695 kb on - strandat 3110.736 kb on + strand, within Echvi_2623at 3110.737 kb on - strand, within Echvi_2623at 3110.751 kb on - strand, within Echvi_2623at 3110.761 kb on + strand, within Echvi_2623at 3110.791 kb on - strand, within Echvi_2623at 3110.797 kb on + strand, within Echvi_2623at 3110.799 kb on + strand, within Echvi_2623at 3110.832 kb on - strand, within Echvi_2623at 3110.892 kb on + strand, within Echvi_2623at 3110.896 kb on + strand, within Echvi_2623at 3110.896 kb on + strand, within Echvi_2623at 3110.896 kb on + strand, within Echvi_2623at 3110.896 kb on + strand, within Echvi_2623at 3110.896 kb on + strand, within Echvi_2623at 3110.896 kb on + strand, within Echvi_2623at 3110.897 kb on - strand, within Echvi_2623at 3110.897 kb on - strand, within Echvi_2623at 3110.956 kb on + strand, within Echvi_2623at 3110.957 kb on - strand, within Echvi_2623at 3110.988 kb on + strand, within Echvi_2623at 3111.089 kb on - strand, within Echvi_2623at 3111.122 kb on + strand, within Echvi_2623at 3111.183 kb on + strand, within Echvi_2623at 3111.183 kb on + strand, within Echvi_2623at 3111.184 kb on - strand, within Echvi_2623at 3111.184 kb on - strand, within Echvi_2623at 3111.184 kb on - strand, within Echvi_2623at 3111.197 kb on + strand, within Echvi_2623at 3111.261 kb on + strand, within Echvi_2623at 3111.355 kb on + strand, within Echvi_2623at 3111.355 kb on + strand, within Echvi_2623at 3111.356 kb on - strand, within Echvi_2623at 3111.356 kb on - strand, within Echvi_2623at 3111.356 kb on - strand, within Echvi_2623at 3111.541 kb on - strand, within Echvi_2623at 3111.541 kb on - strand, within Echvi_2623at 3111.628 kb on - strand, within Echvi_2623at 3111.628 kb on - strand, within Echvi_2623at 3111.761 kb on - strand, within Echvi_2623at 3111.761 kb on - strand, within Echvi_2623at 3111.874 kb on - strandat 3111.963 kb on - strandat 3111.970 kb on + strandat 3111.984 kb on + strandat 3112.003 kb on - strandat 3112.003 kb on - strandat 3112.023 kb on + strandat 3112.028 kb on + strandat 3112.029 kb on - strandat 3112.029 kb on - strandat 3112.029 kb on - strandat 3112.029 kb on - strandat 3112.032 kb on - strandat 3112.054 kb on - strandat 3112.074 kb on + strandat 3112.078 kb on + strandat 3112.079 kb on - strandat 3112.079 kb on - strandat 3112.080 kb on + strandat 3112.081 kb on - strandat 3112.081 kb on - strandat 3112.119 kb on + strandat 3112.120 kb on - strandat 3112.120 kb on - strandat 3112.121 kb on + strandat 3112.121 kb on + strandat 3112.122 kb on - strandat 3112.122 kb on - strandat 3112.122 kb on - strandat 3112.123 kb on + strandat 3112.124 kb on - strandat 3112.163 kb on + strandat 3112.164 kb on - strandat 3112.174 kb on + strandat 3112.175 kb on - strandat 3112.243 kb on - strandat 3112.262 kb on - strandat 3112.262 kb on - strandat 3112.262 kb on - strandat 3112.262 kb on - strandat 3112.265 kb on - strandat 3112.363 kb on - strand, within Echvi_2624at 3112.415 kb on + strand, within Echvi_2624at 3112.459 kb on + strand, within Echvi_2624at 3112.459 kb on + strand, within Echvi_2624at 3112.471 kb on - strand, within Echvi_2624at 3112.517 kb on + strand, within Echvi_2624at 3112.540 kb on - strand, within Echvi_2624at 3112.559 kb on - strand, within Echvi_2624at 3112.559 kb on - strand, within Echvi_2624at 3112.751 kb on - strandat 3112.778 kb on + strandat 3112.778 kb on + strandat 3112.779 kb on - strandat 3112.779 kb on - strandat 3112.918 kb on - strand, within Echvi_2625at 3112.948 kb on + strand, within Echvi_2625at 3112.949 kb on - strand, within Echvi_2625at 3112.949 kb on - strand, within Echvi_2625at 3112.949 kb on - strand, within Echvi_2625at 3112.949 kb on - strand, within Echvi_2625

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 25 mM
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3,109,569 + -1.0
3,109,606 + +0.3
3,109,606 + +1.1
3,109,610 + -0.9
3,109,611 - +0.0
3,109,611 - +0.0
3,109,611 - +1.2
3,109,611 - +2.5
3,109,611 - +1.5
3,109,617 - +1.2
3,109,617 - +0.5
3,109,617 - -0.4
3,109,662 + -0.0
3,109,690 + -0.4
3,109,691 - +0.4
3,109,691 - -0.6
3,109,691 - +0.4
3,109,691 - -0.4
3,109,692 + +0.4
3,109,753 - -0.2
3,109,753 - +1.1
3,109,756 - +1.1
3,109,759 - -0.1
3,109,763 + +0.5
3,109,763 + +0.1
3,109,764 - -0.3
3,109,764 - -1.1
3,109,769 - -0.2
3,109,839 + -0.2
3,109,839 + +0.5
3,109,839 + +0.1
3,109,841 + -1.2
3,109,843 + -1.2
3,109,872 + +0.2
3,109,997 + Echvi_2622 0.19 -0.5
3,109,997 + Echvi_2622 0.19 -0.7
3,110,017 + Echvi_2622 0.22 -0.3
3,110,053 + Echvi_2622 0.27 -1.7
3,110,054 - Echvi_2622 0.28 -0.1
3,110,074 + Echvi_2622 0.30 -0.7
3,110,074 + Echvi_2622 0.30 -0.9
3,110,074 + Echvi_2622 0.30 -0.3
3,110,074 + Echvi_2622 0.30 -0.1
3,110,074 + Echvi_2622 0.30 -0.3
3,110,074 + Echvi_2622 0.30 -1.2
3,110,075 - Echvi_2622 0.31 -0.5
3,110,075 - Echvi_2622 0.31 +0.2
3,110,075 - Echvi_2622 0.31 -0.2
3,110,075 - Echvi_2622 0.31 +0.2
3,110,075 - Echvi_2622 0.31 -0.9
3,110,075 - Echvi_2622 0.31 -0.4
3,110,075 - +1.5
3,110,083 - Echvi_2622 0.32 +0.8
3,110,173 + Echvi_2622 0.45 +0.9
3,110,225 + Echvi_2622 0.52 -0.0
3,110,225 + Echvi_2622 0.52 +0.9
3,110,225 + Echvi_2622 0.52 -0.8
3,110,226 - Echvi_2622 0.52 -0.6
3,110,226 - Echvi_2622 0.52 +2.0
3,110,226 - Echvi_2622 0.52 -0.8
3,110,226 - Echvi_2622 0.52 +0.1
3,110,258 - Echvi_2622 0.57 -0.8
3,110,258 - Echvi_2622 0.57 -1.4
3,110,258 - Echvi_2622 0.57 -1.1
3,110,258 - Echvi_2622 0.57 -2.1
3,110,262 - Echvi_2622 0.57 +0.0
3,110,459 + Echvi_2622 0.86 -2.0
3,110,459 + Echvi_2622 0.86 -0.1
3,110,460 - Echvi_2622 0.86 -0.7
3,110,464 - Echvi_2622 0.86 -0.7
3,110,464 - +1.5
3,110,493 - -0.8
3,110,541 + -0.8
3,110,578 + -0.6
3,110,578 + -0.7
3,110,606 - -0.5
3,110,608 - -0.5
3,110,608 - +0.4
3,110,628 + +0.2
3,110,629 - +0.4
3,110,633 - +0.4
3,110,694 + -0.0
3,110,694 + +0.1
3,110,695 - +0.6
3,110,736 + Echvi_2623 0.12 -0.9
3,110,737 - Echvi_2623 0.13 -1.8
3,110,751 - Echvi_2623 0.14 -1.0
3,110,761 + Echvi_2623 0.14 -1.5
3,110,791 - Echvi_2623 0.16 +0.3
3,110,797 + Echvi_2623 0.17 -1.1
3,110,799 + Echvi_2623 0.17 -0.1
3,110,832 - Echvi_2623 0.19 -1.5
3,110,892 + Echvi_2623 0.23 -1.0
3,110,896 + Echvi_2623 0.23 -0.4
3,110,896 + Echvi_2623 0.23 +0.5
3,110,896 + Echvi_2623 0.23 -0.0
3,110,896 + Echvi_2623 0.23 -1.0
3,110,896 + Echvi_2623 0.23 -1.1
3,110,896 + Echvi_2623 0.23 +0.1
3,110,897 - Echvi_2623 0.24 -1.2
3,110,897 - Echvi_2623 0.24 -0.4
3,110,956 + Echvi_2623 0.28 +0.6
3,110,957 - Echvi_2623 0.28 -0.6
3,110,988 + Echvi_2623 0.30 +0.4
3,111,089 - Echvi_2623 0.37 +0.1
3,111,122 + Echvi_2623 0.39 -0.3
3,111,183 + Echvi_2623 0.43 -1.7
3,111,183 + Echvi_2623 0.43 -0.9
3,111,184 - Echvi_2623 0.43 +0.2
3,111,184 - Echvi_2623 0.43 -0.0
3,111,184 - Echvi_2623 0.43 -0.2
3,111,197 + Echvi_2623 0.44 +0.1
3,111,261 + Echvi_2623 0.48 -1.4
3,111,355 + Echvi_2623 0.55 +0.5
3,111,355 + Echvi_2623 0.55 +0.5
3,111,356 - Echvi_2623 0.55 -1.1
3,111,356 - Echvi_2623 0.55 +0.0
3,111,356 - Echvi_2623 0.55 -0.5
3,111,541 - Echvi_2623 0.68 +1.3
3,111,541 - Echvi_2623 0.68 -1.0
3,111,628 - Echvi_2623 0.74 -0.1
3,111,628 - Echvi_2623 0.74 -0.1
3,111,761 - Echvi_2623 0.83 -0.3
3,111,761 - Echvi_2623 0.83 -0.1
3,111,874 - +0.8
3,111,963 - -0.9
3,111,970 + -0.7
3,111,984 + -0.4
3,112,003 - -0.3
3,112,003 - -0.7
3,112,023 + -0.6
3,112,028 + +0.5
3,112,029 - -0.5
3,112,029 - +1.7
3,112,029 - -0.2
3,112,029 - -1.6
3,112,032 - -0.1
3,112,054 - +0.1
3,112,074 + -1.0
3,112,078 + -0.3
3,112,079 - -0.3
3,112,079 - +1.2
3,112,080 + +0.8
3,112,081 - -0.4
3,112,081 - +0.7
3,112,119 + -1.0
3,112,120 - +0.9
3,112,120 - +0.6
3,112,121 + -0.7
3,112,121 + +0.8
3,112,122 - +0.6
3,112,122 - +1.9
3,112,122 - +1.4
3,112,123 + -0.6
3,112,124 - +0.9
3,112,163 + +1.5
3,112,164 - +0.4
3,112,174 + +0.9
3,112,175 - -1.5
3,112,243 - -0.0
3,112,262 - +0.2
3,112,262 - +1.2
3,112,262 - +0.1
3,112,262 - -0.5
3,112,265 - -0.0
3,112,363 - Echvi_2624 0.23 -1.7
3,112,415 + Echvi_2624 0.34 +0.3
3,112,459 + Echvi_2624 0.42 +1.1
3,112,459 + Echvi_2624 0.42 +0.8
3,112,471 - Echvi_2624 0.45 +0.3
3,112,517 + Echvi_2624 0.54 +0.1
3,112,540 - Echvi_2624 0.59 -0.5
3,112,559 - Echvi_2624 0.62 -0.1
3,112,559 - Echvi_2624 0.62 +0.1
3,112,751 - -0.9
3,112,778 + -1.3
3,112,778 + +0.3
3,112,779 - -0.3
3,112,779 - +0.2
3,112,918 - Echvi_2625 0.34 -0.4
3,112,948 + Echvi_2625 0.40 -2.0
3,112,949 - Echvi_2625 0.40 -0.6
3,112,949 - Echvi_2625 0.40 +0.3
3,112,949 - Echvi_2625 0.40 -0.6
3,112,949 - Echvi_2625 0.40 +0.0

Or see this region's nucleotide sequence