Experiment: m.b. perchlorate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0045 and Echvi_0046 are separated by 150 nucleotides Echvi_0046 and Echvi_0047 are separated by 3 nucleotides Echvi_0047 and Echvi_0048 are separated by 122 nucleotides
Echvi_0045: Echvi_0045 - Protein of unknown function (DUF3108)., at 42,778 to 43,566
_0045
Echvi_0046: Echvi_0046 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 43,717 to 44,406
_0046
Echvi_0047: Echvi_0047 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 44,410 to 45,468
_0047
Echvi_0048: Echvi_0048 - Pseudouridylate synthases, 23S RNA-specific, at 45,591 to 46,298
_0048
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 43.430 kb on + strand, within Echvi_0045 at 43.431 kb on - strand, within Echvi_0045 at 43.449 kb on + strand, within Echvi_0045 at 43.450 kb on - strand, within Echvi_0045 at 43.452 kb on + strand, within Echvi_0045 at 43.453 kb on - strand, within Echvi_0045 at 43.453 kb on - strand, within Echvi_0045 at 43.525 kb on - strand at 43.565 kb on - strand at 43.751 kb on + strand at 43.786 kb on + strand, within Echvi_0046 at 43.807 kb on + strand, within Echvi_0046 at 44.004 kb on - strand, within Echvi_0046 at 44.019 kb on - strand, within Echvi_0046 at 44.019 kb on - strand, within Echvi_0046 at 44.034 kb on + strand, within Echvi_0046 at 44.158 kb on - strand, within Echvi_0046 at 44.316 kb on - strand, within Echvi_0046 at 44.404 kb on + strand at 44.409 kb on + strand at 44.409 kb on + strand at 44.409 kb on + strand at 44.410 kb on - strand at 44.454 kb on + strand at 44.454 kb on + strand at 44.455 kb on - strand at 44.456 kb on + strand at 44.456 kb on + strand at 44.601 kb on + strand, within Echvi_0047 at 44.602 kb on - strand, within Echvi_0047 at 44.602 kb on - strand, within Echvi_0047 at 44.606 kb on - strand, within Echvi_0047 at 44.714 kb on - strand, within Echvi_0047 at 44.831 kb on - strand, within Echvi_0047 at 44.873 kb on + strand, within Echvi_0047 at 44.949 kb on - strand, within Echvi_0047 at 44.983 kb on + strand, within Echvi_0047 at 44.984 kb on - strand, within Echvi_0047 at 44.984 kb on - strand, within Echvi_0047 at 45.057 kb on + strand at 45.058 kb on - strand, within Echvi_0047 at 45.076 kb on + strand, within Echvi_0047 at 45.077 kb on - strand, within Echvi_0047 at 45.094 kb on + strand, within Echvi_0047 at 45.095 kb on - strand, within Echvi_0047 at 45.118 kb on - strand, within Echvi_0047 at 45.163 kb on + strand, within Echvi_0047 at 45.164 kb on - strand, within Echvi_0047 at 45.164 kb on - strand, within Echvi_0047 at 45.204 kb on + strand, within Echvi_0047 at 45.362 kb on + strand, within Echvi_0047 at 45.362 kb on + strand, within Echvi_0047 at 45.363 kb on - strand at 45.363 kb on - strand at 45.512 kb on + strand at 45.601 kb on + strand at 45.617 kb on + strand at 45.639 kb on + strand at 45.641 kb on + strand at 45.641 kb on + strand at 45.663 kb on + strand, within Echvi_0048 at 45.663 kb on + strand, within Echvi_0048 at 45.723 kb on + strand, within Echvi_0048 at 45.723 kb on + strand, within Echvi_0048 at 45.883 kb on - strand, within Echvi_0048 at 46.127 kb on + strand, within Echvi_0048 at 46.197 kb on + strand, within Echvi_0048 at 46.328 kb on - strand at 46.333 kb on - strand at 46.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 25 mM remove 43,430 + Echvi_0045 0.83 +0.5 43,431 - Echvi_0045 0.83 -0.6 43,449 + Echvi_0045 0.85 -0.9 43,450 - Echvi_0045 0.85 +1.9 43,452 + Echvi_0045 0.85 +1.1 43,453 - Echvi_0045 0.86 -0.7 43,453 - Echvi_0045 0.86 -0.2 43,525 - +0.7 43,565 - +0.2 43,751 + -1.9 43,786 + Echvi_0046 0.10 -0.9 43,807 + Echvi_0046 0.13 -0.0 44,004 - Echvi_0046 0.42 +0.1 44,019 - Echvi_0046 0.44 -0.5 44,019 - Echvi_0046 0.44 -0.4 44,034 + Echvi_0046 0.46 +1.5 44,158 - Echvi_0046 0.64 -0.8 44,316 - Echvi_0046 0.87 +0.4 44,404 + +0.8 44,409 + -0.6 44,409 + -0.3 44,409 + -0.3 44,410 - +1.8 44,454 + -1.2 44,454 + -0.6 44,455 - +0.0 44,456 + +0.8 44,456 + +0.8 44,601 + Echvi_0047 0.18 +1.4 44,602 - Echvi_0047 0.18 +1.4 44,602 - Echvi_0047 0.18 -0.8 44,606 - Echvi_0047 0.19 +0.2 44,714 - Echvi_0047 0.29 +0.6 44,831 - Echvi_0047 0.40 -0.2 44,873 + Echvi_0047 0.44 -1.1 44,949 - Echvi_0047 0.51 -0.9 44,983 + Echvi_0047 0.54 -1.0 44,984 - Echvi_0047 0.54 -0.5 44,984 - Echvi_0047 0.54 -0.1 45,057 + +0.7 45,058 - Echvi_0047 0.61 -0.2 45,076 + Echvi_0047 0.63 -0.4 45,077 - Echvi_0047 0.63 -0.5 45,094 + Echvi_0047 0.65 -1.0 45,095 - Echvi_0047 0.65 +0.7 45,118 - Echvi_0047 0.67 -1.1 45,163 + Echvi_0047 0.71 -0.8 45,164 - Echvi_0047 0.71 +1.0 45,164 - Echvi_0047 0.71 -0.3 45,204 + Echvi_0047 0.75 -1.9 45,362 + Echvi_0047 0.90 -1.0 45,362 + Echvi_0047 0.90 -1.0 45,363 - +0.0 45,363 - +1.2 45,512 + +1.2 45,601 + -0.6 45,617 + -0.3 45,639 + -2.8 45,641 + -0.1 45,641 + -0.8 45,663 + Echvi_0048 0.10 -1.0 45,663 + Echvi_0048 0.10 -1.7 45,723 + Echvi_0048 0.19 -0.4 45,723 + Echvi_0048 0.19 -0.4 45,883 - Echvi_0048 0.41 +1.4 46,127 + Echvi_0048 0.76 +0.2 46,197 + Echvi_0048 0.86 -1.0 46,328 - +0.4 46,333 - +0.2 46,392 - -2.0
Or see this region's nucleotide sequence