Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4493

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4491 and EX28DRAFT_4492 are separated by 82 nucleotidesEX28DRAFT_4492 and EX28DRAFT_4493 overlap by 113 nucleotidesEX28DRAFT_4493 and EX28DRAFT_4494 are separated by 115 nucleotides EX28DRAFT_4491: EX28DRAFT_4491 - HAD-superfamily hydrolase, subfamily IIB, at 57,035 to 57,835 _4491 EX28DRAFT_4492: EX28DRAFT_4492 - Carboxylate/Amino Acid/Amine Transporter, at 57,918 to 58,817 _4492 EX28DRAFT_4493: EX28DRAFT_4493 - Transcriptional regulator, at 58,705 to 59,658 _4493 EX28DRAFT_4494: EX28DRAFT_4494 - methionine synthase (B12-independent) (EC 2.1.1.14), at 59,774 to 62,035 _4494 Position (kb) 58 59 60Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 57.784 kb on + strandat 57.809 kb on + strandat 57.809 kb on + strandat 57.809 kb on + strandat 57.817 kb on + strandat 57.834 kb on - strandat 57.834 kb on - strandat 57.882 kb on + strandat 57.925 kb on + strandat 57.941 kb on + strandat 58.095 kb on + strand, within EX28DRAFT_4492at 58.096 kb on + strand, within EX28DRAFT_4492at 58.096 kb on - strand, within EX28DRAFT_4492at 58.097 kb on + strand, within EX28DRAFT_4492at 58.097 kb on + strand, within EX28DRAFT_4492at 58.098 kb on - strand, within EX28DRAFT_4492at 58.098 kb on - strand, within EX28DRAFT_4492at 58.098 kb on - strand, within EX28DRAFT_4492at 58.131 kb on + strand, within EX28DRAFT_4492at 58.131 kb on + strand, within EX28DRAFT_4492at 58.131 kb on + strand, within EX28DRAFT_4492at 58.131 kb on + strand, within EX28DRAFT_4492at 58.132 kb on - strand, within EX28DRAFT_4492at 58.206 kb on + strand, within EX28DRAFT_4492at 58.305 kb on + strand, within EX28DRAFT_4492at 58.389 kb on + strand, within EX28DRAFT_4492at 58.428 kb on - strand, within EX28DRAFT_4492at 58.446 kb on + strand, within EX28DRAFT_4492at 58.446 kb on + strand, within EX28DRAFT_4492at 58.446 kb on + strand, within EX28DRAFT_4492at 58.447 kb on - strand, within EX28DRAFT_4492at 58.447 kb on - strand, within EX28DRAFT_4492at 58.703 kb on + strand, within EX28DRAFT_4492at 58.704 kb on - strand, within EX28DRAFT_4492at 58.865 kb on + strand, within EX28DRAFT_4493at 58.866 kb on - strand, within EX28DRAFT_4493at 58.866 kb on - strand, within EX28DRAFT_4493at 59.177 kb on + strand, within EX28DRAFT_4493at 59.358 kb on + strand, within EX28DRAFT_4493at 59.387 kb on - strand, within EX28DRAFT_4493at 59.387 kb on - strand, within EX28DRAFT_4493at 59.387 kb on - strand, within EX28DRAFT_4493at 59.506 kb on - strand, within EX28DRAFT_4493at 59.685 kb on + strandat 59.701 kb on + strandat 59.701 kb on + strandat 59.702 kb on - strandat 59.702 kb on - strandat 59.702 kb on - strandat 59.702 kb on - strandat 59.703 kb on + strandat 59.703 kb on + strandat 59.704 kb on - strandat 59.704 kb on - strandat 59.708 kb on + strandat 59.722 kb on - strandat 59.722 kb on - strandat 59.770 kb on + strandat 59.770 kb on + strandat 59.770 kb on + strandat 59.771 kb on - strandat 59.850 kb on - strandat 60.045 kb on + strand, within EX28DRAFT_4494at 60.045 kb on + strand, within EX28DRAFT_4494at 60.046 kb on - strand, within EX28DRAFT_4494at 60.049 kb on + strand, within EX28DRAFT_4494at 60.050 kb on - strand, within EX28DRAFT_4494at 60.140 kb on + strand, within EX28DRAFT_4494at 60.140 kb on + strand, within EX28DRAFT_4494at 60.141 kb on - strand, within EX28DRAFT_4494at 60.145 kb on + strand, within EX28DRAFT_4494at 60.146 kb on + strand, within EX28DRAFT_4494at 60.146 kb on + strand, within EX28DRAFT_4494at 60.146 kb on + strand, within EX28DRAFT_4494at 60.147 kb on - strand, within EX28DRAFT_4494at 60.147 kb on - strand, within EX28DRAFT_4494at 60.147 kb on - strand, within EX28DRAFT_4494at 60.147 kb on - strand, within EX28DRAFT_4494at 60.147 kb on - strand, within EX28DRAFT_4494at 60.148 kb on + strand, within EX28DRAFT_4494at 60.148 kb on + strand, within EX28DRAFT_4494at 60.148 kb on + strand, within EX28DRAFT_4494at 60.148 kb on + strand, within EX28DRAFT_4494at 60.149 kb on - strand, within EX28DRAFT_4494at 60.149 kb on - strand, within EX28DRAFT_4494at 60.149 kb on - strand, within EX28DRAFT_4494at 60.273 kb on - strand, within EX28DRAFT_4494at 60.438 kb on + strand, within EX28DRAFT_4494at 60.439 kb on - strand, within EX28DRAFT_4494at 60.500 kb on + strand, within EX28DRAFT_4494at 60.501 kb on - strand, within EX28DRAFT_4494at 60.501 kb on - strand, within EX28DRAFT_4494at 60.574 kb on - strand, within EX28DRAFT_4494at 60.580 kb on + strand, within EX28DRAFT_4494

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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57,784 + +0.7
57,809 + +0.6
57,809 + +1.0
57,809 + +0.1
57,817 + -0.6
57,834 - -0.0
57,834 - -0.8
57,882 + -0.5
57,925 + +1.4
57,941 + +0.4
58,095 + EX28DRAFT_4492 0.20 -0.1
58,096 + EX28DRAFT_4492 0.20 +0.7
58,096 - EX28DRAFT_4492 0.20 -0.8
58,097 + EX28DRAFT_4492 0.20 +0.2
58,097 + EX28DRAFT_4492 0.20 +0.2
58,098 - EX28DRAFT_4492 0.20 -0.5
58,098 - EX28DRAFT_4492 0.20 -0.8
58,098 - EX28DRAFT_4492 0.20 +0.6
58,131 + EX28DRAFT_4492 0.24 +0.3
58,131 + EX28DRAFT_4492 0.24 +0.6
58,131 + EX28DRAFT_4492 0.24 +2.3
58,131 + EX28DRAFT_4492 0.24 +0.5
58,132 - EX28DRAFT_4492 0.24 +0.4
58,206 + EX28DRAFT_4492 0.32 -0.6
58,305 + EX28DRAFT_4492 0.43 +0.6
58,389 + EX28DRAFT_4492 0.52 -0.2
58,428 - EX28DRAFT_4492 0.57 +0.1
58,446 + EX28DRAFT_4492 0.59 -0.0
58,446 + EX28DRAFT_4492 0.59 +0.1
58,446 + EX28DRAFT_4492 0.59 +0.8
58,447 - EX28DRAFT_4492 0.59 +1.4
58,447 - EX28DRAFT_4492 0.59 -0.5
58,703 + EX28DRAFT_4492 0.87 +0.2
58,704 - EX28DRAFT_4492 0.87 -0.9
58,865 + EX28DRAFT_4493 0.17 -3.0
58,866 - EX28DRAFT_4493 0.17 -3.7
58,866 - EX28DRAFT_4493 0.17 +0.3
59,177 + EX28DRAFT_4493 0.49 -3.1
59,358 + EX28DRAFT_4493 0.68 -1.6
59,387 - EX28DRAFT_4493 0.71 -2.8
59,387 - EX28DRAFT_4493 0.71 -2.0
59,387 - EX28DRAFT_4493 0.71 -2.6
59,506 - EX28DRAFT_4493 0.84 -0.5
59,685 + -4.0
59,701 + -4.2
59,701 + -3.4
59,702 - -0.8
59,702 - -0.7
59,702 - -0.7
59,702 - -0.0
59,703 + -3.7
59,703 + +0.9
59,704 - -1.0
59,704 - +1.8
59,708 + -2.1
59,722 - -0.8
59,722 - -1.0
59,770 + -1.3
59,770 + -1.1
59,770 + -1.2
59,771 - +0.2
59,850 - -0.1
60,045 + EX28DRAFT_4494 0.12 -0.0
60,045 + EX28DRAFT_4494 0.12 -1.7
60,046 - EX28DRAFT_4494 0.12 -0.8
60,049 + EX28DRAFT_4494 0.12 -1.5
60,050 - EX28DRAFT_4494 0.12 -1.8
60,140 + EX28DRAFT_4494 0.16 -0.7
60,140 + EX28DRAFT_4494 0.16 -0.5
60,141 - EX28DRAFT_4494 0.16 -0.8
60,145 + EX28DRAFT_4494 0.16 -0.7
60,146 + EX28DRAFT_4494 0.16 -1.6
60,146 + EX28DRAFT_4494 0.16 -1.0
60,146 + EX28DRAFT_4494 0.16 -1.0
60,147 - EX28DRAFT_4494 0.16 -1.5
60,147 - EX28DRAFT_4494 0.16 -0.4
60,147 - EX28DRAFT_4494 0.16 -0.5
60,147 - EX28DRAFT_4494 0.16 -0.6
60,147 - EX28DRAFT_4494 0.16 -0.6
60,148 + EX28DRAFT_4494 0.17 -0.6
60,148 + EX28DRAFT_4494 0.17 +0.2
60,148 + EX28DRAFT_4494 0.17 -0.9
60,148 + EX28DRAFT_4494 0.17 +1.1
60,149 - EX28DRAFT_4494 0.17 +0.2
60,149 - EX28DRAFT_4494 0.17 -0.4
60,149 - EX28DRAFT_4494 0.17 -0.8
60,273 - EX28DRAFT_4494 0.22 -0.3
60,438 + EX28DRAFT_4494 0.29 -1.1
60,439 - EX28DRAFT_4494 0.29 -0.5
60,500 + EX28DRAFT_4494 0.32 -0.8
60,501 - EX28DRAFT_4494 0.32 -0.1
60,501 - EX28DRAFT_4494 0.32 -1.3
60,574 - EX28DRAFT_4494 0.35 -0.3
60,580 + EX28DRAFT_4494 0.36 -0.9

Or see this region's nucleotide sequence