Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4479 and EX28DRAFT_4480 overlap by 4 nucleotides EX28DRAFT_4480 and EX28DRAFT_4481 overlap by 1 nucleotides EX28DRAFT_4481 and EX28DRAFT_4482 are separated by 107 nucleotides
EX28DRAFT_4479: EX28DRAFT_4479 - Uncharacterized protein conserved in bacteria, at 44,249 to 44,956
_4479
EX28DRAFT_4480: EX28DRAFT_4480 - tyrosine recombinase XerC, at 44,953 to 45,855
_4480
EX28DRAFT_4481: EX28DRAFT_4481 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 45,855 to 46,571
_4481
EX28DRAFT_4482: EX28DRAFT_4482 - ATP-dependent DNA helicase UvrD (EC 3.6.1.-), at 46,679 to 48,841
_4482
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 45.791 kb on + strand at 45.865 kb on - strand at 46.059 kb on + strand, within EX28DRAFT_4481 at 46.300 kb on - strand, within EX28DRAFT_4481 at 46.359 kb on + strand, within EX28DRAFT_4481 at 46.359 kb on + strand, within EX28DRAFT_4481 at 46.359 kb on + strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.382 kb on + strand, within EX28DRAFT_4481 at 46.567 kb on + strand at 46.567 kb on + strand at 46.568 kb on - strand at 46.569 kb on + strand at 46.569 kb on + strand at 46.569 kb on + strand at 46.570 kb on - strand at 46.570 kb on - strand at 46.583 kb on - strand at 46.588 kb on - strand at 46.661 kb on + strand at 46.662 kb on - strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.665 kb on - strand at 46.665 kb on - strand at 46.665 kb on - strand at 46.708 kb on + strand at 47.112 kb on - strand, within EX28DRAFT_4482
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 45,791 + -1.0 45,865 - -0.4 46,059 + EX28DRAFT_4481 0.28 -0.3 46,300 - EX28DRAFT_4481 0.62 +0.4 46,359 + EX28DRAFT_4481 0.70 +0.4 46,359 + EX28DRAFT_4481 0.70 +0.4 46,359 + EX28DRAFT_4481 0.70 +0.3 46,360 - EX28DRAFT_4481 0.70 +0.1 46,360 - EX28DRAFT_4481 0.70 +0.8 46,360 - EX28DRAFT_4481 0.70 +0.5 46,360 - EX28DRAFT_4481 0.70 -0.7 46,382 + EX28DRAFT_4481 0.74 +1.7 46,567 + +0.6 46,567 + +0.2 46,568 - +0.3 46,569 + -0.4 46,569 + +0.1 46,569 + +2.8 46,570 - -0.7 46,570 - +0.5 46,583 - +1.8 46,588 - +0.5 46,661 + +0.5 46,662 - +0.2 46,664 + +0.9 46,664 + +0.5 46,664 + +0.1 46,664 + +1.0 46,664 + +0.2 46,664 + +0.8 46,665 - -2.9 46,665 - +0.1 46,665 - +0.2 46,708 + +0.5 47,112 - EX28DRAFT_4482 0.20 +0.2
Or see this region's nucleotide sequence