Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4442

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4440 and EX28DRAFT_4441 overlap by 4 nucleotidesEX28DRAFT_4441 and EX28DRAFT_4442 are separated by 18 nucleotidesEX28DRAFT_4442 and EX28DRAFT_4443 are separated by 59 nucleotides EX28DRAFT_4440: EX28DRAFT_4440 - acetolactate synthase, large subunit (EC 2.2.1.6), at 3,911 to 5,557 _4440 EX28DRAFT_4441: EX28DRAFT_4441 - acetolactate synthase, small subunit (EC 2.2.1.6), at 5,554 to 5,817 _4441 EX28DRAFT_4442: EX28DRAFT_4442 - branched-chain amino acid aminotransferase, group I, at 5,836 to 6,765 _4442 EX28DRAFT_4443: EX28DRAFT_4443 - dihydroxy-acid dehydratase, at 6,825 to 8,675 _4443 Position (kb) 5 6 7Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4.967 kb on + strand, within EX28DRAFT_4440at 4.968 kb on - strand, within EX28DRAFT_4440at 5.002 kb on + strand, within EX28DRAFT_4440at 5.003 kb on - strand, within EX28DRAFT_4440at 5.003 kb on - strand, within EX28DRAFT_4440at 5.035 kb on - strand, within EX28DRAFT_4440at 5.072 kb on + strand, within EX28DRAFT_4440at 5.073 kb on - strand, within EX28DRAFT_4440at 5.183 kb on - strand, within EX28DRAFT_4440at 5.550 kb on + strandat 5.550 kb on + strandat 5.652 kb on + strand, within EX28DRAFT_4441at 5.653 kb on - strand, within EX28DRAFT_4441at 5.700 kb on - strand, within EX28DRAFT_4441at 5.730 kb on - strand, within EX28DRAFT_4441at 5.736 kb on + strand, within EX28DRAFT_4441at 5.757 kb on - strand, within EX28DRAFT_4441at 5.857 kb on + strandat 5.858 kb on - strandat 5.929 kb on + strand, within EX28DRAFT_4442at 5.929 kb on + strand, within EX28DRAFT_4442at 5.930 kb on - strand, within EX28DRAFT_4442at 5.935 kb on - strand, within EX28DRAFT_4442at 5.942 kb on + strand, within EX28DRAFT_4442at 5.943 kb on - strand, within EX28DRAFT_4442at 5.943 kb on - strand, within EX28DRAFT_4442at 5.962 kb on + strand, within EX28DRAFT_4442at 5.963 kb on - strand, within EX28DRAFT_4442at 6.182 kb on - strand, within EX28DRAFT_4442at 6.184 kb on - strand, within EX28DRAFT_4442at 6.329 kb on - strand, within EX28DRAFT_4442at 6.407 kb on - strand, within EX28DRAFT_4442at 6.407 kb on - strand, within EX28DRAFT_4442at 6.407 kb on - strand, within EX28DRAFT_4442at 6.453 kb on + strand, within EX28DRAFT_4442at 6.546 kb on - strand, within EX28DRAFT_4442at 6.546 kb on - strand, within EX28DRAFT_4442at 6.577 kb on + strand, within EX28DRAFT_4442at 6.688 kb on - strandat 6.732 kb on + strandat 6.733 kb on - strandat 6.737 kb on - strandat 6.756 kb on + strandat 6.764 kb on - strandat 6.769 kb on + strandat 6.770 kb on - strandat 6.797 kb on + strandat 6.798 kb on - strandat 6.801 kb on + strandat 6.802 kb on - strandat 6.802 kb on - strandat 6.819 kb on + strandat 6.830 kb on + strandat 6.830 kb on + strandat 6.831 kb on - strandat 6.831 kb on - strandat 6.831 kb on - strandat 6.831 kb on - strandat 6.834 kb on + strandat 6.835 kb on - strandat 6.835 kb on - strandat 6.864 kb on - strandat 7.140 kb on + strand, within EX28DRAFT_4443at 7.140 kb on + strand, within EX28DRAFT_4443at 7.140 kb on + strand, within EX28DRAFT_4443at 7.140 kb on + strand, within EX28DRAFT_4443at 7.140 kb on + strand, within EX28DRAFT_4443at 7.141 kb on - strand, within EX28DRAFT_4443at 7.141 kb on - strand, within EX28DRAFT_4443at 7.142 kb on + strand, within EX28DRAFT_4443at 7.142 kb on + strand, within EX28DRAFT_4443at 7.142 kb on + strand, within EX28DRAFT_4443at 7.142 kb on + strand, within EX28DRAFT_4443at 7.143 kb on - strand, within EX28DRAFT_4443at 7.143 kb on - strand, within EX28DRAFT_4443at 7.143 kb on - strand, within EX28DRAFT_4443at 7.143 kb on - strand, within EX28DRAFT_4443at 7.143 kb on - strand, within EX28DRAFT_4443at 7.235 kb on + strand, within EX28DRAFT_4443at 7.236 kb on - strand, within EX28DRAFT_4443at 7.236 kb on - strand, within EX28DRAFT_4443at 7.563 kb on + strand, within EX28DRAFT_4443at 7.563 kb on + strand, within EX28DRAFT_4443at 7.564 kb on - strand, within EX28DRAFT_4443at 7.564 kb on - strand, within EX28DRAFT_4443at 7.760 kb on + strand, within EX28DRAFT_4443at 7.761 kb on - strand, within EX28DRAFT_4443at 7.761 kb on - strand, within EX28DRAFT_4443

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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4,967 + EX28DRAFT_4440 0.64 -0.6
4,968 - EX28DRAFT_4440 0.64 -2.7
5,002 + EX28DRAFT_4440 0.66 -1.2
5,003 - EX28DRAFT_4440 0.66 -4.0
5,003 - EX28DRAFT_4440 0.66 -1.6
5,035 - EX28DRAFT_4440 0.68 -2.7
5,072 + EX28DRAFT_4440 0.70 -1.4
5,073 - EX28DRAFT_4440 0.71 -3.1
5,183 - EX28DRAFT_4440 0.77 -2.0
5,550 + -1.2
5,550 + +0.6
5,652 + EX28DRAFT_4441 0.37 +1.1
5,653 - EX28DRAFT_4441 0.38 -1.1
5,700 - EX28DRAFT_4441 0.55 +0.8
5,730 - EX28DRAFT_4441 0.67 +0.0
5,736 + EX28DRAFT_4441 0.69 -0.5
5,757 - EX28DRAFT_4441 0.77 -1.6
5,857 + -3.9
5,858 - +0.9
5,929 + EX28DRAFT_4442 0.10 -0.8
5,929 + EX28DRAFT_4442 0.10 +0.2
5,930 - EX28DRAFT_4442 0.10 -1.4
5,935 - EX28DRAFT_4442 0.11 -1.4
5,942 + EX28DRAFT_4442 0.11 -1.5
5,943 - EX28DRAFT_4442 0.12 -2.5
5,943 - EX28DRAFT_4442 0.12 -3.7
5,962 + EX28DRAFT_4442 0.14 -1.8
5,963 - EX28DRAFT_4442 0.14 -3.8
6,182 - EX28DRAFT_4442 0.37 -2.6
6,184 - EX28DRAFT_4442 0.37 -2.0
6,329 - EX28DRAFT_4442 0.53 -2.0
6,407 - EX28DRAFT_4442 0.61 -4.1
6,407 - EX28DRAFT_4442 0.61 -2.3
6,407 - EX28DRAFT_4442 0.61 -0.3
6,453 + EX28DRAFT_4442 0.66 -0.8
6,546 - EX28DRAFT_4442 0.76 -2.4
6,546 - EX28DRAFT_4442 0.76 -2.7
6,577 + EX28DRAFT_4442 0.80 +0.5
6,688 - -2.4
6,732 + -0.6
6,733 - -0.4
6,737 - -4.1
6,756 + -0.0
6,764 - -2.1
6,769 + +0.3
6,770 - -4.0
6,797 + -0.2
6,798 - -4.3
6,801 + -0.6
6,802 - -1.7
6,802 - -2.9
6,819 + -2.8
6,830 + -0.5
6,830 + -3.1
6,831 - -0.5
6,831 - +2.3
6,831 - -3.7
6,831 - -1.1
6,834 + -3.0
6,835 - -3.5
6,835 - -4.7
6,864 - -1.8
7,140 + EX28DRAFT_4443 0.17 -1.7
7,140 + EX28DRAFT_4443 0.17 -0.7
7,140 + EX28DRAFT_4443 0.17 -1.8
7,140 + EX28DRAFT_4443 0.17 -0.2
7,140 + EX28DRAFT_4443 0.17 -3.8
7,141 - EX28DRAFT_4443 0.17 -1.6
7,141 - EX28DRAFT_4443 0.17 -1.7
7,142 + EX28DRAFT_4443 0.17 +0.2
7,142 + EX28DRAFT_4443 0.17 -2.8
7,142 + EX28DRAFT_4443 0.17 -2.2
7,142 + EX28DRAFT_4443 0.17 +0.2
7,143 - EX28DRAFT_4443 0.17 -2.7
7,143 - EX28DRAFT_4443 0.17 +0.3
7,143 - EX28DRAFT_4443 0.17 -2.5
7,143 - EX28DRAFT_4443 0.17 -1.9
7,143 - EX28DRAFT_4443 0.17 -2.3
7,235 + EX28DRAFT_4443 0.22 -1.6
7,236 - EX28DRAFT_4443 0.22 +0.0
7,236 - EX28DRAFT_4443 0.22 -0.2
7,563 + EX28DRAFT_4443 0.40 +0.3
7,563 + EX28DRAFT_4443 0.40 -0.5
7,564 - EX28DRAFT_4443 0.40 -4.0
7,564 - EX28DRAFT_4443 0.40 -3.4
7,760 + EX28DRAFT_4443 0.51 -3.0
7,761 - EX28DRAFT_4443 0.51 -2.4
7,761 - EX28DRAFT_4443 0.51 -1.1

Or see this region's nucleotide sequence