Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4346 and EX28DRAFT_4347 are separated by 57 nucleotides EX28DRAFT_4347 and EX28DRAFT_4348 are separated by 188 nucleotides EX28DRAFT_4348 and EX28DRAFT_4349 are separated by 72 nucleotides EX28DRAFT_4349 and EX28DRAFT_4350 are separated by 111 nucleotides
EX28DRAFT_4346: EX28DRAFT_4346 - RNA, at 8,896 to 9,150
_4346
EX28DRAFT_4347: EX28DRAFT_4347 - Uncharacterized protein conserved in bacteria, at 9,208 to 9,723
_4347
EX28DRAFT_4348: EX28DRAFT_4348 - oxygen-independent coproporphyrinogen III oxidase, at 9,912 to 11,285
_4348
EX28DRAFT_4349: EX28DRAFT_4349 - hypothetical protein, at 11,358 to 11,468
_4349
EX28DRAFT_4350: EX28DRAFT_4350 - nitrogen regulation protein NR(I), at 11,580 to 12,992
_4350
Position (kb)
9
10
11
12 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 8.928 kb on - strand, within EX28DRAFT_4346 at 9.000 kb on + strand, within EX28DRAFT_4346 at 9.000 kb on + strand, within EX28DRAFT_4346 at 9.034 kb on - strand, within EX28DRAFT_4346 at 9.174 kb on + strand at 9.175 kb on - strand at 9.177 kb on - strand at 9.194 kb on - strand at 9.194 kb on - strand at 9.194 kb on - strand at 9.194 kb on - strand at 9.650 kb on - strand, within EX28DRAFT_4347 at 9.693 kb on + strand at 9.693 kb on + strand at 9.693 kb on + strand at 9.694 kb on - strand at 9.756 kb on + strand at 9.756 kb on + strand at 9.757 kb on - strand at 9.758 kb on + strand at 9.759 kb on - strand at 9.759 kb on - strand at 9.771 kb on + strand at 9.773 kb on + strand at 9.773 kb on + strand at 9.773 kb on + strand at 9.773 kb on + strand at 9.773 kb on + strand at 9.773 kb on + strand at 9.774 kb on - strand at 9.779 kb on - strand at 9.803 kb on + strand at 9.882 kb on - strand at 9.882 kb on - strand at 9.947 kb on - strand at 9.963 kb on + strand at 10.078 kb on - strand, within EX28DRAFT_4348 at 10.387 kb on + strand, within EX28DRAFT_4348 at 10.387 kb on + strand, within EX28DRAFT_4348 at 11.216 kb on + strand at 11.284 kb on - strand at 11.311 kb on + strand at 11.311 kb on + strand at 11.345 kb on + strand at 11.364 kb on - strand at 11.448 kb on - strand, within EX28DRAFT_4349 at 11.448 kb on - strand, within EX28DRAFT_4349 at 11.500 kb on + strand at 11.500 kb on + strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.501 kb on - strand at 11.520 kb on + strand at 11.575 kb on + strand at 12.042 kb on - strand, within EX28DRAFT_4350
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 8,928 - EX28DRAFT_4346 0.13 -0.3 9,000 + EX28DRAFT_4346 0.41 +0.2 9,000 + EX28DRAFT_4346 0.41 +0.4 9,034 - EX28DRAFT_4346 0.54 -0.2 9,174 + +0.3 9,175 - -0.3 9,177 - -0.1 9,194 - +0.6 9,194 - -0.3 9,194 - -0.2 9,194 - +0.4 9,650 - EX28DRAFT_4347 0.86 +0.9 9,693 + -0.2 9,693 + -0.3 9,693 + -0.4 9,694 - -1.8 9,756 + +0.0 9,756 + +0.2 9,757 - -0.6 9,758 + +1.7 9,759 - -0.0 9,759 - +0.4 9,771 + -1.6 9,773 + -0.0 9,773 + +0.4 9,773 + +1.0 9,773 + -0.6 9,773 + +0.2 9,773 + +0.5 9,774 - +0.4 9,779 - +0.7 9,803 + -0.6 9,882 - +0.2 9,882 - -0.7 9,947 - +0.4 9,963 + +0.6 10,078 - EX28DRAFT_4348 0.12 +0.6 10,387 + EX28DRAFT_4348 0.35 +1.0 10,387 + EX28DRAFT_4348 0.35 +0.6 11,216 + +1.1 11,284 - -0.5 11,311 + -0.4 11,311 + +0.3 11,345 + +1.4 11,364 - +0.6 11,448 - EX28DRAFT_4349 0.81 +0.3 11,448 - EX28DRAFT_4349 0.81 -0.7 11,500 + -0.1 11,500 + +0.3 11,501 - +0.4 11,501 - +0.1 11,501 - +1.0 11,501 - +0.4 11,520 + -0.1 11,575 + +0.3 12,042 - EX28DRAFT_4350 0.33 -2.9
Or see this region's nucleotide sequence