Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4331

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4330 and EX28DRAFT_4331 are separated by 270 nucleotidesEX28DRAFT_4331 and EX28DRAFT_4332 are separated by 241 nucleotidesEX28DRAFT_4332 and EX28DRAFT_4333 are separated by 73 nucleotides EX28DRAFT_4330: EX28DRAFT_4330 - malate synthase A, at 137,917 to 139,518 _4330 EX28DRAFT_4331: EX28DRAFT_4331 - homoserine O-succinyltransferase (EC 2.3.1.46), at 139,789 to 140,718 _4331 EX28DRAFT_4332: EX28DRAFT_4332 - 5S, at 140,960 to 141,075 _4332 EX28DRAFT_4333: EX28DRAFT_4333 - 23S, at 141,149 to 141,320 _4333 Position (kb) 139 140 141Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 138.884 kb on + strand, within EX28DRAFT_4330at 138.923 kb on + strand, within EX28DRAFT_4330at 139.018 kb on + strand, within EX28DRAFT_4330at 139.019 kb on - strand, within EX28DRAFT_4330at 139.080 kb on + strand, within EX28DRAFT_4330at 139.083 kb on - strand, within EX28DRAFT_4330at 139.383 kb on + strandat 139.384 kb on - strandat 139.384 kb on - strandat 139.386 kb on + strandat 139.470 kb on - strandat 139.520 kb on - strandat 139.580 kb on + strandat 139.581 kb on - strandat 139.600 kb on + strandat 139.790 kb on + strandat 139.844 kb on + strandat 139.847 kb on + strandat 139.848 kb on - strandat 139.861 kb on - strandat 139.932 kb on - strand, within EX28DRAFT_4331at 139.938 kb on - strand, within EX28DRAFT_4331at 139.938 kb on - strand, within EX28DRAFT_4331at 139.938 kb on - strand, within EX28DRAFT_4331at 139.943 kb on - strand, within EX28DRAFT_4331at 139.953 kb on + strand, within EX28DRAFT_4331at 139.953 kb on + strand, within EX28DRAFT_4331at 140.060 kb on + strand, within EX28DRAFT_4331at 140.060 kb on + strand, within EX28DRAFT_4331at 140.061 kb on - strand, within EX28DRAFT_4331at 140.061 kb on - strand, within EX28DRAFT_4331at 140.105 kb on + strand, within EX28DRAFT_4331at 140.216 kb on + strand, within EX28DRAFT_4331at 140.314 kb on - strand, within EX28DRAFT_4331at 140.453 kb on + strand, within EX28DRAFT_4331at 140.454 kb on - strand, within EX28DRAFT_4331at 140.521 kb on - strand, within EX28DRAFT_4331at 140.601 kb on + strand, within EX28DRAFT_4331at 140.602 kb on - strand, within EX28DRAFT_4331at 140.719 kb on - strandat 140.724 kb on + strandat 140.724 kb on + strandat 140.724 kb on + strandat 140.724 kb on + strandat 140.724 kb on + strandat 140.724 kb on + strandat 140.724 kb on + strandat 140.725 kb on - strandat 140.725 kb on - strandat 140.739 kb on + strandat 140.739 kb on + strandat 140.740 kb on - strandat 140.740 kb on - strandat 140.740 kb on - strandat 140.743 kb on + strandat 140.743 kb on + strandat 140.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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138,884 + EX28DRAFT_4330 0.60 +0.3
138,923 + EX28DRAFT_4330 0.63 -0.8
139,018 + EX28DRAFT_4330 0.69 -0.3
139,019 - EX28DRAFT_4330 0.69 -0.0
139,080 + EX28DRAFT_4330 0.73 -0.4
139,083 - EX28DRAFT_4330 0.73 +0.4
139,383 + +0.6
139,384 - -0.3
139,384 - +1.0
139,386 + -0.0
139,470 - -0.9
139,520 - +0.2
139,580 + -0.3
139,581 - +0.3
139,600 + -0.1
139,790 + +0.8
139,844 + -0.2
139,847 + -2.1
139,848 - -2.1
139,861 - -0.4
139,932 - EX28DRAFT_4331 0.15 -0.8
139,938 - EX28DRAFT_4331 0.16 -0.6
139,938 - EX28DRAFT_4331 0.16 -0.8
139,938 - EX28DRAFT_4331 0.16 -2.7
139,943 - EX28DRAFT_4331 0.17 -2.2
139,953 + EX28DRAFT_4331 0.18 -0.8
139,953 + EX28DRAFT_4331 0.18 -2.3
140,060 + EX28DRAFT_4331 0.29 -4.4
140,060 + EX28DRAFT_4331 0.29 -1.6
140,061 - EX28DRAFT_4331 0.29 -1.0
140,061 - EX28DRAFT_4331 0.29 -6.7
140,105 + EX28DRAFT_4331 0.34 -2.6
140,216 + EX28DRAFT_4331 0.46 -3.9
140,314 - EX28DRAFT_4331 0.56 -0.2
140,453 + EX28DRAFT_4331 0.71 -3.0
140,454 - EX28DRAFT_4331 0.72 -1.7
140,521 - EX28DRAFT_4331 0.79 -1.0
140,601 + EX28DRAFT_4331 0.87 -4.7
140,602 - EX28DRAFT_4331 0.87 -3.0
140,719 - -3.3
140,724 + -3.3
140,724 + -5.2
140,724 + -3.2
140,724 + -2.0
140,724 + -3.3
140,724 + -2.4
140,724 + -5.4
140,725 - -3.4
140,725 - -1.4
140,739 + -4.5
140,739 + -3.8
140,740 - -0.7
140,740 - +0.6
140,740 - +0.6
140,743 + -0.9
140,743 + -2.8
140,953 - -0.3

Or see this region's nucleotide sequence