Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4330 and EX28DRAFT_4331 are separated by 270 nucleotides EX28DRAFT_4331 and EX28DRAFT_4332 are separated by 241 nucleotides EX28DRAFT_4332 and EX28DRAFT_4333 are separated by 73 nucleotides
EX28DRAFT_4330: EX28DRAFT_4330 - malate synthase A, at 137,917 to 139,518
_4330
EX28DRAFT_4331: EX28DRAFT_4331 - homoserine O-succinyltransferase (EC 2.3.1.46), at 139,789 to 140,718
_4331
EX28DRAFT_4332: EX28DRAFT_4332 - 5S, at 140,960 to 141,075
_4332
EX28DRAFT_4333: EX28DRAFT_4333 - 23S, at 141,149 to 141,320
_4333
Position (kb)
139
140
141 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 138.884 kb on + strand, within EX28DRAFT_4330 at 138.923 kb on + strand, within EX28DRAFT_4330 at 139.018 kb on + strand, within EX28DRAFT_4330 at 139.019 kb on - strand, within EX28DRAFT_4330 at 139.080 kb on + strand, within EX28DRAFT_4330 at 139.083 kb on - strand, within EX28DRAFT_4330 at 139.383 kb on + strand at 139.384 kb on - strand at 139.384 kb on - strand at 139.386 kb on + strand at 139.470 kb on - strand at 139.520 kb on - strand at 139.580 kb on + strand at 139.581 kb on - strand at 139.600 kb on + strand at 139.790 kb on + strand at 139.844 kb on + strand at 139.847 kb on + strand at 139.848 kb on - strand at 139.861 kb on - strand at 139.932 kb on - strand, within EX28DRAFT_4331 at 139.938 kb on - strand, within EX28DRAFT_4331 at 139.938 kb on - strand, within EX28DRAFT_4331 at 139.938 kb on - strand, within EX28DRAFT_4331 at 139.943 kb on - strand, within EX28DRAFT_4331 at 139.953 kb on + strand, within EX28DRAFT_4331 at 139.953 kb on + strand, within EX28DRAFT_4331 at 140.060 kb on + strand, within EX28DRAFT_4331 at 140.060 kb on + strand, within EX28DRAFT_4331 at 140.061 kb on - strand, within EX28DRAFT_4331 at 140.061 kb on - strand, within EX28DRAFT_4331 at 140.105 kb on + strand, within EX28DRAFT_4331 at 140.216 kb on + strand, within EX28DRAFT_4331 at 140.314 kb on - strand, within EX28DRAFT_4331 at 140.453 kb on + strand, within EX28DRAFT_4331 at 140.454 kb on - strand, within EX28DRAFT_4331 at 140.521 kb on - strand, within EX28DRAFT_4331 at 140.601 kb on + strand, within EX28DRAFT_4331 at 140.602 kb on - strand, within EX28DRAFT_4331 at 140.719 kb on - strand at 140.724 kb on + strand at 140.724 kb on + strand at 140.724 kb on + strand at 140.724 kb on + strand at 140.724 kb on + strand at 140.724 kb on + strand at 140.724 kb on + strand at 140.725 kb on - strand at 140.725 kb on - strand at 140.739 kb on + strand at 140.739 kb on + strand at 140.740 kb on - strand at 140.740 kb on - strand at 140.740 kb on - strand at 140.743 kb on + strand at 140.743 kb on + strand at 140.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 138,884 + EX28DRAFT_4330 0.60 +0.3 138,923 + EX28DRAFT_4330 0.63 -0.8 139,018 + EX28DRAFT_4330 0.69 -0.3 139,019 - EX28DRAFT_4330 0.69 -0.0 139,080 + EX28DRAFT_4330 0.73 -0.4 139,083 - EX28DRAFT_4330 0.73 +0.4 139,383 + +0.6 139,384 - -0.3 139,384 - +1.0 139,386 + -0.0 139,470 - -0.9 139,520 - +0.2 139,580 + -0.3 139,581 - +0.3 139,600 + -0.1 139,790 + +0.8 139,844 + -0.2 139,847 + -2.1 139,848 - -2.1 139,861 - -0.4 139,932 - EX28DRAFT_4331 0.15 -0.8 139,938 - EX28DRAFT_4331 0.16 -0.6 139,938 - EX28DRAFT_4331 0.16 -0.8 139,938 - EX28DRAFT_4331 0.16 -2.7 139,943 - EX28DRAFT_4331 0.17 -2.2 139,953 + EX28DRAFT_4331 0.18 -0.8 139,953 + EX28DRAFT_4331 0.18 -2.3 140,060 + EX28DRAFT_4331 0.29 -4.4 140,060 + EX28DRAFT_4331 0.29 -1.6 140,061 - EX28DRAFT_4331 0.29 -1.0 140,061 - EX28DRAFT_4331 0.29 -6.7 140,105 + EX28DRAFT_4331 0.34 -2.6 140,216 + EX28DRAFT_4331 0.46 -3.9 140,314 - EX28DRAFT_4331 0.56 -0.2 140,453 + EX28DRAFT_4331 0.71 -3.0 140,454 - EX28DRAFT_4331 0.72 -1.7 140,521 - EX28DRAFT_4331 0.79 -1.0 140,601 + EX28DRAFT_4331 0.87 -4.7 140,602 - EX28DRAFT_4331 0.87 -3.0 140,719 - -3.3 140,724 + -3.3 140,724 + -5.2 140,724 + -3.2 140,724 + -2.0 140,724 + -3.3 140,724 + -2.4 140,724 + -5.4 140,725 - -3.4 140,725 - -1.4 140,739 + -4.5 140,739 + -3.8 140,740 - -0.7 140,740 - +0.6 140,740 - +0.6 140,743 + -0.9 140,743 + -2.8 140,953 - -0.3
Or see this region's nucleotide sequence